functional annotation for a list of genes
linkToDavid.pl $input $numerical_column $type $out_file1
.. class:: infomark
The list is limited to 400 IDs.
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**Dataset formats**
The input dataset is in tabular_ format. The output dataset is html_ with
a link to the DAVID website as described below.
(`Dataset missing?`_)
.. _tabular: ./static/formatHelp.html#tab
.. _html: ./static/formatHelp.html#html
.. _Dataset missing?: ./static/formatHelp.html
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**What it does**
This tool creates a link to the Database for Annotation,
Visualization, and Integrated Discovery (DAVID) website at NIH,
sending a list of IDs from the selected column of a tabular
Galaxy dataset. To follow the created link, click on the
eye icon once the Galaxy tool has finished running.
DAVID provides a comprehensive set of functional annotation tools
to help investigators discover biological meaning behind large
lists of genes.
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**References**
Huang DW, Sherman BT, Lempicki RA. (2009) Systematic and integrative analysis
of large gene lists using DAVID bioinformatics resources.
Nat Protoc. 4(1):44-57.
Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. (2003)
DAVID: database for annotation, visualization, and integrated discovery.
Genome Biol. 4(5):P3. Epub 2003 Apr 3.