[2] | 1 | <tool id="scatterplot_rpy" name="Scatterplot">
|
---|
| 2 | <description>of two numeric columns</description>
|
---|
| 3 | <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
|
---|
| 4 | <inputs>
|
---|
| 5 | <param name="input" type="data" format="tabular" label="Dataset" help="Query missing? See TIP below"/>
|
---|
| 6 | <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
|
---|
| 7 | <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" />
|
---|
| 8 | <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/>
|
---|
| 9 | <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/>
|
---|
| 10 | <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/>
|
---|
| 11 | </inputs>
|
---|
| 12 | <outputs>
|
---|
| 13 | <data format="pdf" name="out_file1" />
|
---|
| 14 | </outputs>
|
---|
| 15 | <requirements>
|
---|
| 16 | <requirement type="python-module">rpy</requirement>
|
---|
| 17 | </requirements>
|
---|
| 18 | <!-- TODO: uncomment the following test when we have tools.update_state() working for
|
---|
| 19 | multiple dependents with the same dependency.
|
---|
| 20 | <tests>
|
---|
| 21 | <test>
|
---|
| 22 | <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
|
---|
| 23 | <param name="col1" value="2"/>
|
---|
| 24 | <param name="col2" value="3"/>
|
---|
| 25 | <param name="title" value="Scatterplot"/>
|
---|
| 26 | <param name="xlab" value="V1"/>
|
---|
| 27 | <param name="ylab" value="V2"/>
|
---|
| 28 | <output name="out_file1" file="scatterplot_out1.pdf" />
|
---|
| 29 | </test>
|
---|
| 30 | </tests>
|
---|
| 31 | -->
|
---|
| 32 | <help>
|
---|
| 33 |
|
---|
| 34 | .. class:: infomark
|
---|
| 35 |
|
---|
| 36 | **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
|
---|
| 37 |
|
---|
| 38 | -----
|
---|
| 39 |
|
---|
| 40 | **Syntax**
|
---|
| 41 |
|
---|
| 42 | This tool creates a simple scatter plot between two variables containing numeric values of a selected query.
|
---|
| 43 |
|
---|
| 44 | - All invalid, blank and comment lines in the query are skipped. The number of skipped lines is displayed in the resulting history item.
|
---|
| 45 |
|
---|
| 46 | - **Plot title** The scatterplot title
|
---|
| 47 | - **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot.
|
---|
| 48 |
|
---|
| 49 | -----
|
---|
| 50 |
|
---|
| 51 | **Example**
|
---|
| 52 |
|
---|
| 53 | - Input file::
|
---|
| 54 |
|
---|
| 55 | 1 68 4.1
|
---|
| 56 | 2 71 4.6
|
---|
| 57 | 3 62 3.8
|
---|
| 58 | 4 75 4.4
|
---|
| 59 | 5 58 3.2
|
---|
| 60 | 6 60 3.1
|
---|
| 61 | 7 67 3.8
|
---|
| 62 | 8 68 4.1
|
---|
| 63 | 9 71 4.3
|
---|
| 64 | 10 69 3.7
|
---|
| 65 |
|
---|
| 66 | - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset.
|
---|
| 67 |
|
---|
| 68 | .. image:: ../static/images/scatterplot.png
|
---|
| 69 |
|
---|
| 70 | </help>
|
---|
| 71 | </tool>
|
---|