by specified attributes microsats_mutability.py $input1 $out_file1 ${pri_condition.primary_group} #if $pri_condition.primary_group == "6": ${pri_condition.binsize} ${pri_condition.subgroup} -1 #else: 0 ${pri_condition.sub_condition.subgroup} #if $pri_condition.sub_condition.subgroup == "6": ${pri_condition.sub_condition.s_binsize} #else: -1 #end if #end if $gens ${region.type} #if $region.type == "win": ${region.input2} $input2.dbkey $input2.metadata.chromCol,$input2.metadata.startCol,$input2.metadata.endCol,$input2.metadata.strandCol #else: "None" #end if Alignment block Intervals in your history Motif type (mono/di/tri etc.) Repeat Unit (AG, GCT etc.) Repeat Number None Motif type (mono/di/tri etc.) Repeat Unit (AG, GCT etc.) None Motif type (mono/di/tri etc.) Repeat Number None Repeat Unit (AG, GCT etc.) Repeat Number .. class:: infomark **What it does** This tool computes microsatellite mutability for the orthologous microsatellites fetched from 'Extract Orthologous Microsatellites from pair-wise alignments' tool. Mutability is computed according to the method described in the following paper: *Webster et al., Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments, Proc Natl Acad Sci 2002 June 25; 99(13): 8748-8753* ----- .. class:: warningmark **Note** The user selected group and subgroup by features, the computed mutability and the count of the number of repeats used to compute that mutability are added as columns to the output.