[2] | 1 | from galaxy import app
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| 2 | import os, string, time
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| 3 |
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| 4 | def timenow():
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| 5 | """return current time as a string
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| 6 | """
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| 7 | return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))
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| 8 |
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| 9 |
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| 10 |
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| 11 | def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
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| 12 | name,data = out_data.items()[0]
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| 13 | basename = param_dict['title']
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| 14 | basename = basename.encode()
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| 15 | killme = string.punctuation + string.whitespace
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| 16 | trantab = string.maketrans(killme,'_'*len(killme))
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| 17 | title = basename.translate(trantab)
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| 18 | info = '%s filtered by rgClean.py at %s' % (title,timenow())
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| 19 | data.change_datatype('pbed')
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| 20 | data.file_name = data.file_name
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| 21 | data.metadata.base_name = title
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| 22 | data.name = '%s.pbed' % title
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| 23 | data.info = info
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| 24 | data.readonly = True
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| 25 | app.model.context.flush()
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| 26 |
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| 27 |
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| 28 |
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