[2] | 1 | # for GTOOL linkage ped to marchini snptest format |
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| 2 | from galaxy import datatypes |
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| 3 | |
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| 4 | |
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| 5 | def exec_before_job(app, inp_data, out_data, param_dict, tool=None): |
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| 6 | """Sets the name of the data""" |
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| 7 | job_name = param_dict.get( 'o', 'Marchini' ) |
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| 8 | log = ['txt','%s_rgGTOOL_report.log' % job_name,'txt'] |
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| 9 | lookup={} |
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| 10 | lookup['logf'] = log |
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| 11 | for name in lookup.keys(): |
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| 12 | data = out_data[name] |
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| 13 | data_type,newname,ext = lookup[name] |
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| 14 | data = app.datatypes_registry.change_datatype(data, data_type) |
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| 15 | data.name = newname |
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| 16 | out_data[name] = data |
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| 17 | |
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| 18 | |
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| 19 | |
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