genotypes from genomic region rgRegion.py $infile $r $tag $out_file1 .. class:: infomark **Syntax** - **Source** is the file you want to extract some columns from over a genomic region such as a gene or chromosome - **Tag** is the name to give the results file for this run - **Region** is the genomic region cut and paste from a UCSC browser location window - **Genome Build** is the version of the genome your markers are from - use hg18 for CAMP illumina data ----- **Summary** This tool is a very general purpose report builder. It can cut specific columns from amalgamated analyses - eg powers and pvalues, or regressions over a specified genomic region (given as a UCSC browser location - eg) It takes a tab delimited file containing rs chrom offset float1..floatn and cuts out a region and a subset of the columns into a tabular file. If you make sure that RS is included, the result that appears in your history will have a direct link to ucsc genome graphs for viewing in full genomic context ross lazarus (ross.lazarus@gmail.com) August 2007 released under the LGPL. see documentation for license terms.