genotypes from genomic region
rgRegion.py $infile $r $tag $out_file1
.. class:: infomark
**Syntax**
- **Source** is the file you want to extract some columns from over a genomic region such as a gene or chromosome
- **Tag** is the name to give the results file for this run
- **Region** is the genomic region cut and paste from a UCSC browser location window
- **Genome Build** is the version of the genome your markers are from - use hg18 for CAMP illumina data
-----
**Summary**
This tool is a very general purpose report builder. It can cut specific columns from
amalgamated analyses - eg powers and pvalues,
or regressions over a specified genomic region (given as a UCSC browser location - eg)
It takes a tab delimited file containing rs chrom offset float1..floatn and cuts out a region and
a subset of the columns into a tabular file. If you make sure that RS is included, the
result that appears in your history will have a direct link to ucsc genome graphs for viewing
in full genomic context
ross lazarus (ross.lazarus@gmail.com)
August 2007
released under the LGPL. see documentation for license terms.