[2] | 1 | <tool id="solid_qual_boxplot" name="Draw quality score boxplot" version="1.0.0"> |
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| 2 | <description>for SOLiD data</description> |
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| 3 | |
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| 4 | <command interpreter="bash">qualsolid_boxplot_graph.sh -t '$input.name' -i $input -o $output</command> |
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| 5 | |
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| 6 | <inputs> |
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| 7 | <param format="txt" name="input" type="data" label="Statistics report file (output of 'Quality Statistics for SOLiD data' tool)" /> |
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| 8 | </inputs> |
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| 9 | |
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| 10 | <outputs> |
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| 11 | <data format="png" name="output" metadata_source="input" /> |
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| 12 | </outputs> |
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| 13 | <help> |
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| 14 | |
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| 15 | **What it does** |
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| 16 | |
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| 17 | Creates a boxplot graph for the quality scores in the library. |
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| 18 | |
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| 19 | .. class:: infomark |
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| 20 | |
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| 21 | **TIP:** Use the **Quality Statistics for SOLiD data** tool to generate the report file needed for this tool. |
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| 22 | |
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| 23 | ----- |
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| 24 | |
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| 25 | **Output Example** |
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| 26 | |
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| 27 | * Black horizontal lines are medians |
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| 28 | * Rectangular red boxes show the Inter-quartile Range (IQR) (top value is Q3, bottom value is Q1) |
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| 29 | * Whiskers show outliers at max. 1.5*IQR |
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| 30 | |
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| 31 | |
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| 32 | .. image:: ../static/images/solid_qual.png |
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| 33 | |
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| 34 | ------ |
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| 35 | |
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| 36 | This tool is based on `FASTX-toolkit`__ by Assaf Gordon. |
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| 37 | |
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| 38 | .. __: http://hannonlab.cshl.edu/fastx_toolkit/ |
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| 39 | </help> |
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| 40 | </tool> |
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