#!/usr/bin/env python """ Validate a dataset based on extension a metadata passed in on the command line. Outputs a binhex'd representation of the exceptions. usage: %prog input output -m, --metadata=N: base64 pickeled metadata -x, --ext=N: extension as understood by galaxy """ import pkg_resources; pkg_resources.require( "bx-python" ) from bx.cookbook import doc_optparse from galaxy import model from fileinput import FileInput from galaxy import util def main(): options, args = doc_optparse.parse( __doc__ ) try: extension = options.ext except: doc_optparse.exception() # create datatype data = model.Dataset( extension=extension, id=int( args[0] ) ) data.file_path = "/home/ian/trunk/database/files/" if options.metadata: data.metadata = util.string_to_object( options.metadata ) errors = data.datatype.validate( data ) print util.object_to_string(errors) if __name__ == "__main__": main()