[2] | 1 | #!/usr/bin/env python
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| 2 |
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| 3 | """
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| 4 | Script that Creates a zip file for use by GMAJ
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| 5 | """
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| 6 | import sys, zipfile
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| 7 |
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| 8 | def __main__():
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| 9 | #create a new zip file
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| 10 | out_file = zipfile.ZipFile( sys.argv[1], "w" )
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| 11 | #add info files
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| 12 | out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST
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| 13 | out_file.write( sys.argv[2], "input.maf" )
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| 14 |
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| 15 | #add annotation files
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| 16 | for line in open( sys.argv[4] ):
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| 17 | try:
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| 18 | out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] )
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| 19 | except:
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| 20 | continue
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| 21 | out_file.close()
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| 22 |
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| 23 | if __name__ == "__main__": __main__()
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