Index: galaxy-central/tool-data/shared/ucsc/builds.txt
===================================================================
--- galaxy-central/tool-data/shared/ucsc/builds.txt (revision 3)
+++ galaxy-central/tool-data/shared/ucsc/builds.txt (revision 3)
@@ -0,0 +1,152 @@
+#Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn
+?	unspecified (?)
+hg19Haps	hg19Haplotypes Feb. 2009 (GRCh37/hg19Haps) (hg19Haps)
+hg19	Human Feb. 2009 (GRCh37/hg19) (hg19)
+hg18	Human Mar. 2006 (NCBI36/hg18) (hg18)
+hg17	Human May 2004 (NCBI35/hg17) (hg17)
+hg16	Human July 2003 (NCBI34/hg16) (hg16)
+hg15	Human Apr. 2003 (NCBI33/hg15) (hg15)
+venter1	J. Craig Venter Sep. 2007 (HuRef/venter1) (venter1)
+panTro2	Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2)
+panTro1	Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1)
+gorGor2	Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2)
+gorGor1	Gorilla Oct. 2008 (Sanger 0.1/gorGor1) (gorGor1)
+ponAbe2	Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2)
+rheMac2	Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2)
+papHam1	Baboon Nov. 2008 (Baylor 1.0/papHam1) (papHam1)
+calJac3	Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3)
+calJac1	Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1)
+otoGar1	Bushbaby Dec. 2006 (Broad/otoGar1) (otoGar1)
+micMur1	Mouse lemur Jun. 2003 (Broad/micMur1) (micMur1)
+tupBel1	Tree shrew Dec. 2006 (Broad/tupBel1) (tupBel1)
+mmtv	MMTV Nov. 2009 (MMTV/mmtv) (mmtv)
+homPan20	chimp/human Jun. 2008 (UCSC Recon/homPan20) (homPan20)
+homIni20	orang/human Jun. 2008 (UCSC Recon/homIni20) (homIni20)
+sorAra1	Shrew June 2006 (Broad/sorAra1) (sorAra1)
+mm9	Mouse July 2007 (NCBI37/mm9) (mm9)
+mm8	Mouse Feb. 2006 (NCBI36/mm8) (mm8)
+mm7	Mouse Aug. 2005 (NCBI35/mm7) (mm7)
+rn4	Rat Nov. 2004 (Baylor 3.4/rn4) (rn4)
+rn3	Rat June 2003 (Baylor 3.1/rn3) (rn3)
+speTri1	Squirrel Feb. 2008 (Broad/speTri1) (speTri1)
+cavPor3	Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3)
+oryCun2	Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2)
+oryCun1	Rabbit May 2005 (Broad/oryCun1) (oryCun1)
+ochPri2	Pika Jul. 2008 (Broad/ochPri2) (ochPri2)
+eriEur1	Hedgehog June 2006 (Broad/eriEur1) (eriEur1)
+felCatV17e	Cat Dec. 2008 (NHGRI/GTB V17e/felCatV17e) (felCatV17e)
+felCat3	Cat Mar. 2006 (Broad/felCat3) (felCat3)
+ailMel1	Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1)
+nemVec1	Starlet sea anemone Jun. 2007 (JGI-PDF/nemVec1) (nemVec1)
+canFam2	Dog May 2005 (Broad/canFam2) (canFam2)
+canFam1	Dog July 2004 (Broad/canFam1) (canFam1)
+canFamPoodle1	Dog May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1)
+equCab2	Horse Sep. 2007 (Broad/equCab2) (equCab2)
+equCab1	Horse Jan. 2007 (Broad/equCab1) (equCab1)
+susScr2	Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2)
+pteVam1	Megabat Jul. 2008 (Broad/pteVam1) (pteVam1)
+myoLuc1	Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1)
+susScr1	Pig Apr. 2009 (SGSC 9.53/susScr1) (susScr1)
+turTru1	Dolphin Feb. 2008 (Broad/turTru1) (turTru1)
+tarSyr1	Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1)
+proCap1	Rock hyrax Jul. 2008 (Broad/proCap1) (proCap1)
+oviAri1	Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1)
+dipOrd1	Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1)
+choHof1	Sloth Jul. 2008 (Broad/choHof1) (choHof1)
+bosTau4	Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4)
+bosTau3	Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3)
+bosTau2	Cow Mar. 2005 (Baylor 2.0/bosTau2) (bosTau2)
+macEug1	Wallaby Nov. 2007 (Baylor 1.0/macEug1) (macEug1)
+dasNov2	Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2)
+dasNov1	Armadillo May 2005 (Broad/dasNov1) (dasNov1)
+echTel1	Tenrec July 2005 (Broad/echTel1) (echTel1)
+loxAfr3	Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3)
+loxAfr2	Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2)
+loxAfr1	Elephant May 2005 (Broad/loxAfr1) (loxAfr1)
+monDom5	Opossum Oct. 2006 (Broad/monDom5) (monDom5)
+monDom4	Opossum Jan. 2006 (Broad/monDom4) (monDom4)
+monDom1	Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1)
+ornAna1	Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1)
+galGal3	Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3)
+galGal2	Chicken Feb. 2004 (WUGSC 1.0/galGal2) (galGal2)
+taeGut1	Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) (taeGut1)
+anoCar1	Lizard Feb. 2007 (Broad/anoCar1) (anoCar1)
+xenTro2	X. tropicalis Aug. 2005 (JGI 4.1/xenTro2) (xenTro2)
+xenTro1	X. tropicalis Oct. 2004 (JGI 3.0/xenTro1) (xenTro1)
+danRer6	Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6)
+danRer5	Zebrafish July 2007 (Zv7/danRer5) (danRer5)
+danRer4	Zebrafish Mar. 2006 (Zv6/danRer4) (danRer4)
+danRer3	Zebrafish May 2005 (Zv5/danRer3) (danRer3)
+tetNig2	Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2)
+tetNig1	Tetraodon Feb. 2004 (Genoscope 7/tetNig1) (tetNig1)
+fr2	Fugu Oct. 2004 (JGI 4.0/fr2) (fr2)
+fr1	Fugu Aug. 2002 (JGI 3.0/fr1) (fr1)
+gasAcu1	Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1)
+oryLat2	Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2)
+oryLat1	Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1)
+petMar1	Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1)
+borEut13	Boreoeutherian Apr. 24. 2006 (UCSC Recon/borEut13) (borEut13)
+canHg12	Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12) (canHg12)
+rodEnt13	Rodent Apr. 24. 2006 (UCSC Recon/rodEnt13) (rodEnt13)
+priMat13	Primate Apr. 24. 2006 (UCSC Recon/priMat13) (priMat13)
+nonAfr13	Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13)
+lauRas13	Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13)
+homIni14	Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14)
+homIni13	Hominidae Apr. 24. 2006 (UCSC Recon/homIni13) (homIni13)
+gliRes13	Glires Apr. 24. 2006 (UCSC Recon/gliRes13) (gliRes13)
+eutHer13	Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13) (eutHer13)
+euaGli13	Euarchontoglires Apr. 24. 2006 (UCSC Recon/euaGli13) (euaGli13)
+catArr1	Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1)
+afrOth13	Afrotheria Apr. 24. 2006 (UCSC Recon/afrOth13) (afrOth13)
+braFlo1	Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1)
+ci2	C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2)
+ci1	C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1)
+cioSav2	C. savignyi July 2005 (Sidow Lab 2.0/cioSav2) (cioSav2)
+cioSav1	C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1)
+strPur2	S. purpuratus Sep. 2006 (Baylor 2.1/strPur2) (strPur2)
+strPur1	S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1)
+ce8	C. elegans Jun 2009 (WS204/ce8) (ce8)
+ce7	C. elegans Feb 2009 (WS200/ce7) (ce7)
+aplCal1	Sea hare Sept. 2008 (Broad 2.0/aplCal1) (aplCal1)
+ce6	C. elegans May 2008 (WS190/ce6) (ce6)
+ce5	C. elegans Aug. 2007 (WS180/ce5) (ce5)
+ce4	C. elegans Jan. 2007 (WS170/ce4) (ce4)
+ce3	C. elegans March 2005 (WS140/ce3) (ce3)
+ce2	C. elegans Mar. 2004 (WS120/ce2) (ce2)
+caePb2	C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2)
+caePb1	C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1)
+cb3	C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3)
+cb2	C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2)
+cb1	C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1)
+caeRem3	C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3)
+caeRem2	C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2)
+caeRem1	C. remanei March 2005 (WUGSC prelim/caeRem1) (caeRem1)
+caeJap2	C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2)
+caeJap1	C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1)
+priPac1	P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1)
+dm3	D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3)
+dm2	D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2)
+dm1	D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1)
+droSim1	D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1)
+droSec1	D. sechellia Oct. 2005 (Broad/droSec1) (droSec1)
+droYak2	D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2)
+droYak1	D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1)
+droEre1	D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1)
+droAna2	D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2)
+droAna1	D. ananassae July 2004 (TIGR/droAna1) (droAna1)
+dp3	D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3)
+dp2	D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2)
+droPer1	D. persimilis Oct. 2005 (Broad/droPer1) (droPer1)
+droVir2	D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2)
+droVir1	D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1)
+droMoj2	D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2)
+droMoj1	D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1)
+droGri1	D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1)
+anoGam1	A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1)
+apiMel2	A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2)
+apiMel1	A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1)
+triCas2	T. castaneum Sep. 2005 (Baylor 2.0/triCas2) (triCas2)
+falciparum	P. falciparum Plasmodium falciparum (?/falciparum) (falciparum)
+sacCer2	S. cerevisiae June 2008 (SGD/sacCer2) (sacCer2)
+sacCer1	S. cerevisiae Oct. 2003 (SGD/sacCer1) (sacCer1)
+sc1	SARS coronavirus Apr. 2003 (GenBank Apr. 14 '03/sc1) (sc1)