##maf version=1 a score=64549.0 s hg17.chr1 147962192 9 + 245522847 TCATTTAAT s panTro1.chr1 129698808 9 + 229575298 TCATTTAAT s mm5.chr3 65458475 7 - 160575607 --ATTTGAT s rn3.chr2 68236843 7 - 258222147 --ATTTGAT s canFam1.chr17 62929731 9 + 66886099 TTATTTGAT a score=37247.0 s hg17.chr1 147962201 43 + 245522847 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG s panTro1.chr1 129698817 43 + 229575298 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG s mm5.chr3 65458482 43 - 160575607 GACAATCTTCTGACGCAAGGCTCGAGGCCCAGAGCCAGGTAGT s rn3.chr2 68236850 43 - 258222147 GACAATCTTCTGACGCAAGGCTCGGGGCCCAGCGCCAGGGAGT s canFam1.chr17 62929740 43 + 66886099 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAACCAGGGAGG s danRer1.chr10 19400803 43 + 25436222 GGCGCTCTGCTTGAGCACAGCTTTGGGTCGTGCGCTCTTCAAA a score=1000.0 s hg17.chr1 147962244 1 + 245522847 G s panTro1.chr1 129698860 1 + 229575298 G s mm5.chr3 65458525 1 - 160575607 G s rn3.chr2 68236893 1 - 258222147 G s canFam1.chr17 62929783 1 + 66886099 G a score=0.0 s hg17.chr1 147962244 3 + 245522847 GGC a score=3000.0 s hg17.chr1 147962245 2 + 245522847 GC s panTro1.chr1 129698861 2 + 229575298 GC s mm5.chr3 65458526 2 - 160575607 GC s rn3.chr2 68236894 2 - 258222147 GC s canFam1.chr17 62929784 2 + 66886099 GC s fr1.chrUn 290886762 2 + 349519338 GC a score=18092.0 s hg17.chr1 147962247 26 + 245522847 TCAGGAGGTGGCGGGCCGGGGCC-----CAG s panTro1.chr1 129698863 26 + 229575298 TCAGGAGGTGGCGGGCCAGGGCC-----CAG s mm5.chr3 65458528 26 - 160575607 TCGGGGGGTGGGGGCCCGGGGCC-----CAG s rn3.chr2 68236896 26 - 258222147 TCGGGGGGTGGGGGCCCGGGGCC-----CAG s canFam1.chr17 62929786 26 + 66886099 TCGGGAGGTGGTGGGCCAGGGCC-----CAG s fr1.chrUn 290886764 26 + 349519338 TGATGAGGAATCGAGTCCTGTGG-----CAG s danRer1.chr10 19400846 31 + 25436222 TTAGCAGGTGAATCGCTAGCGTCGGTGTTAG a score=219213.0 s hg17.chr1 147962273 178 + 245522847 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAGACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG s panTro1.chr1 129698889 178 + 229575298 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAAACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG s mm5.chr3 65458554 178 - 160575607 CGCCGAGGCGGTGGGTGGAAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGCACCGGGACCTTCGGG---GGTCGCCCCTGG s rn3.chr2 68236922 178 - 258222147 CGCTGAGGCAGTGGGTGGTAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGAACAGGGACCTTTGGT---GGTCGCCCTTGG s canFam1.chr17 62929812 178 + 66886099 GGCTGAGGCAGTGGGCGGCAGTCCGTGGGCAGTGATGTACTTCTTGTAGGCCTCACGGATGATCTTGAAGGCTCGAGCAGTGGCGTAGGGGATGTCTGTGACAGGGTCCCGGTACAGGGCTGGGCGATGGGTCACGGGGCAGACCTCCCGAACAGGGACCTTTGGG---GGCCGGCCTTGG s fr1.chrUn 290886790 179 + 349519338 CTCCAGG--AGTGTTTGGGAAGCCGTGTGCAGCCACGTATTTACGGTAAGCTTCTCGGATGATGCGGAAGGCTCGTGCGTTAGCATAAGGTATGTCTGTGACCGGATCTCTGTACAGTGCGATCTTATGCGTGACGGGACAAATCTCCTGGACGGGCAGCTGAGGGCTCGGCTGCCCCTTG s danRer1.chrUn 128306408 178 - 367113659 GGATGGGCCAGTGCAGGGCAGGCCATGAGCAGCCACATACTTCTTATAGGCCTCCCGAATTATCCTGAAGGCCTGTACATTAGCGTAAGGAATGTCAGTGATGGGGTCCCGGTAGAGCGCAGGCTTATGGGTAACAGGACAGACCTCCTGGACAGGTACTCGAGGA---GCAGGCGACTGG a score=84843.0 s hg17.chr1 147962451 56 + 245522847 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA s panTro1.chr1 129699067 56 + 229575298 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA s mm5.chr3 65458732 56 - 160575607 GGGAACCACTCTTCAAACGTTGCATCATCACTGAACGTGATGAAGGTGCGAGAGCA s rn3.chr2 68237100 56 - 258222147 GGGAACCATTCTTCAAACGTGGCATCATCACTGAATGTGATGAAGGTACGTGAGCA s canFam1.chr17 62929990 56 + 66886099 GGAAACCATTCCTCAAATGTTGCATCATCACTAAAAGTGATGAAAGTACGCGAGCA s galGal2.chrUn 96971568 56 + 165033910 GGGGAAGAACGTTCGAAGGTTTCGTCGTCGCTGAAGGCATTGAAGGTGCGCGAGCA s fr1.chrUn 290886972 56 + 349519338 GAAAAGGCCACCTTAAAAGCTTCGTCGTCGCTGAACGTGATGTAAGTACGGGAGCA s danRer1.chrUn 128306586 56 - 367113659 GGAAAGACACGCTGGAAGGACTCATCATCACTGAATGTGATGTAGGTGCGAGAGCA a score=25539.0 s hg17.chr1 147962507 63 + 245522847 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGACACCGAGGGAG-C s panTro1.chr1 129699123 63 + 229575298 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGAAGGGGAGGGAG-C s mm5.chr3 65458788 75 - 160575607 GTG-----AGCAGGAGGGGTGGCAGCGGCAGCTCCAGTC------CCGGTCCCAGCATG--TGGAGCCAGTGCAGAGGCTGTAGGAG-C s rn3.chr2 68237156 63 - 258222147 GTG-----AGGAGGAGGGACGG------------CAGGT------CCAGTGCCAGCATG--TGCAGTCAGTGCAGAGGACGTAGGAG-C s canFam1.chr17 62930046 63 + 66886099 GCG-----AGGTGGAGGGACAA------------CGGGT------CCAGTGCCGGCATG--GGGAGTCAGTGCAGAAGCTGTGGGAG-T s galGal2.chrUn 96971633 66 + 165033910 GCA-----GGCCGGGGCTGCGG------------CCGGG------GCGGCGTCTGCCTGCTGCGGGTCCTGGTCCAACCTGCAAGAGCC s danRer1.chrUn 128306646 74 - 367113659 GTGTTTACAGCAGCTGTGTTTG------------TGAATGGGACACCGGGTGCTGCGGA--AAGCGTTGATTCGGACTGGGAAAGAG-C a score=14242.0 s hg17.chr1 147962570 10 + 245522847 AGGATCAAGT s panTro1.chr1 129699186 10 + 229575298 AGGATCAAGT s mm5.chr3 65458863 10 - 160575607 AGGATCAAGG s rn3.chr2 68237219 10 - 258222147 AGGATCAAGT s canFam1.chr17 62930109 10 + 66886099 AGGATCCAGC s galGal2.chrUn 96971699 10 + 165033910 GGGGTCAGCT a score=550634.0 s hg17.chr1 147984545 85 + 245522847 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG s panTro1.chr1 129723125 85 + 229575298 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAG s mm5.chr3 65474800 76 - 160575607 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCCGGGTTTTCATCCCTTGATGCCGGGGCCCCTGCTGGTA------CCGCAG s rn3.chr2 68255714 76 - 258222147 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCGGGGTTTTCACCCCTTGATTCCGGGGTCCCTGCCGGTA------CCGCAG s canFam1.chr17 62947719 82 + 66886099 ATGGCGTCGGCCTCCTCTGGGCCGTCG---GCGGCTGGGGTTTCATCCTTTGATCCCGGGGTCCCTTCCTGTGCTTCGGCTTCAG a score=365854.0 s hg17.chr1 148078400 182 + 245522847 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC s panTro1.chr1 129830209 182 + 229575298 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC s mm5.chr3 65575311 182 - 160575607 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC s rn3.chr2 68356506 182 - 258222147 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC s canFam1.chr17 63050241 182 + 66886099 TCACATGATGCCATTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATGCTGCCATCTACCATCTGCTCCACCAGCAGCTGGAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCGCTCTTTGAGGTTGCGGATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC s galGal2.chrUn 96994100 182 + 165033910 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCGTACAGTTTGGTGGTGATGGAGCGCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCCGTCATGTTCAT-GTGGAAGCGCTCCTTCAGGTTGCGGATGGTGCTGGAGCCGTGGAAGCAGGGGAGCTGCGA-GC s fr1.chrUn 196934251 182 - 349519338 TCACATGATTCCATTTGTCAGGTACTGGAAGCCGTCGTAGAGTTTGGTCGTCAGCGACCTCATCGAGCCCTCGACCAGCTGATCGATCAGCAGCTGGAGCTGCTCCTCTGTCAGACTCAT-GTGGAAACGTTCCTTCAAACCCCGCATGGTGCTCGACCCGTGGAAACACGGCAGCTGGGA-CC s danRer1.chrNA 19436521 184 - 390413307 TCACATGATACCGTTGGTCAGATACTGGAAGCCGTCGTACAGTTTGGTAGTGATGGAGCGCATGGAGCCGTCCACCATCTGCTCCACCAGCACCTGCAGGTGCTCCTCCGATAAGTACATGGGGGAATAACTCCTTCAGGTTGCGGATAGTGCTGGAGCCATGGAAGCGAGGGAGCTGTGACAC a score=172494.0 s hg17.chr1 148185136 140 + 245522847 ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA s panTro1.chr1 129935611 140 + 229575298 ATGGAGGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGTGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA s mm5.chr3 65694347 140 - 160575607 ATGGAAGCGTTTTGGGAGTCACGGGCTGGCCACTGGGCCGGGGGTCCGGCTCCAGGGCAGTTTTACCGCATCCCGGCCACCCCCAGCGGCCTCATGGACCCGGCGTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCA s rn3.chr2 68486927 140 - 258222147 ATGGAAGCGTTTTGGGAGTCACGGACTGGCCACTGGGCCGGGGGTCCGGCTCCGGGGCAGTTTTACCGCGTCCCGTCCACCCCCAGCTGCCTCATGGATCCGATGTCTGCGCCCTGCGAGGGTCCCATCACTCGGACCCA s canFam1.chr17 63150913 140 + 66886099 ATGGAAGCCTTTCTGGAGTCGCGGTCCAGAGTTTGGGCCGGTGGTCCCGCCCCGGGGCAGTTTTACCACATCCCGCCTAGTTCCGTCGCCTCCGTGGAGCCGGCGTTTTCTCCTTACGGGGGTCCGGTTACGCGCACGCA a score=69091.0 s hg17.chr10 55251623 116 + 135413628 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAACTC--------CC------CTTGTTTTGTTCAGATGTGA----TTTCCATATTTGTTA------CTTCTGAAG-GGCACA---- s panTro1.chr8 56162651 116 + 138322177 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAATTC--------TC------CTTGTTTTGTGCAAATGTGA----TTTCCATATTTGTTA------CGTCCGAAG-GGCACA---- s mm5.chr10 56176594 116 - 130633972 TTACAAAGATGTTGATTGACTGTGAGGTTGCACGTCAATTCCCTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCATGTGTGA----TTTTCATGCCTGTTT------TCTCTGCAG-GGCAAA---- s rn3.chr20 14526840 116 + 55296979 TTACAAGGACGTTGACTGACTGTGAGTTTGCACGTCAATCCCTTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCACATGTGA----TTTTCATGTTTGTTT------TCTCTGCAG-GACAAA---- s canFam1.chr26 4431080 116 - 41009621 TTACAGTGAAGTAGATTGACTGTGAGATTGGTTCTCCGTTTCCTCGGCAAAACTGTGCAAATTC--------CC------CTGGGGTTGTTGAGACGTCA----CGTCCACATTTTCTC------TCTCTGGAG-GGCAAC---- s galGal2.chr6 27913521 123 - 33893787 TTACAGTGCTGTCGACTGAGATGGAAAGCGTTTCTCAAGCTCCTCCACAACACAGCTCAAGTTG--------CCGTTCTGCTGGTTGTGCTCAGCTGCAG----CCTCGGGAGTTGGCA------GCTCTGGCGTTGCAAC---- s danRer1.chr12 3415306 139 + 24175710 TCACAGAACAGTGGACTGAGATGGAAAGCGTTTCTCCAGCTCCTCCACTACTGAGTTCATGCTTGGATTGGGCT------CTGATGGTGGTCCTTCTTGAGCAGGCTCCGCCTCTGTTACACCAGCCTCTGGTTCGACAGACACT a score=137977.0 s hg17.chr10 55251739 126 + 135413628 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAG-CTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACGTGTCTGAGGATGCCTTTTGGTTCTCTCT s panTro1.chr8 56162767 127 + 138322177 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAGACTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACATGTCTGAGGATGCCTTTTGGTTCTCTCT s mm5.chr10 56176710 126 - 130633972 ACGTGTGTAGTTTTGAGGGATCTGCAGGTGGG---CAGTTTTTTTCTATGTGACTGTACATGTTAG-ACACTGATTTCTCGAGCTCTGCCAAGTTTTTCACATGTCTGAGGATCCCTTTTGGATGTCTGT s rn3.chr20 14526956 126 + 55296979 AGGGGTGGAGTTTTGAGAGCTCTGTGGGTGGA---CAGTTTTTCTCGATGTGACTGTACATGTTAG-ACACCGATTTCTCGAGCTCTGCCAGGTTTTTCACGTGCCTGAGGATCCCTTTGGGATGTCTGT s canFam1.chr26 4431196 126 - 41009621 TTGTCTCTAGTTTCCAGCTGTGTGTTGCTGGA---AAGTTTTTTTCTATTTGACTGTACATGTTAG-CAACTGACTTTTCAAGGTCCGCTAAGTTTTTTATATGCTTGAGGATGCCCTTTGGTTGTTTCT s galGal2.chr6 27913644 128 - 33893787 TGGTTTG-AGCTTAGAGATGTGCTTGGGCAGAACGTGGTTTTTGTCTATTTGGCTGTACATATTGG-CCACGGACTTTTCAATCGCTGCTAAATTCTGAATGTTTTTAAGAATACCTTTCAGCTCCCTAC s fr1.chrUn 9089644 117 + 349519338 TAGGATGAAGCTTGGGCACCTT---------G---TAGTTTTTGTCTACTTGGCTGTACATGTTGG-CAATGGACCTCTCTATGTCAGCGAGATTCTGGATGTTTTTCAGGATCCCTTTGAGCTCCTTTT s danRer1.chr12 3415445 124 + 24175710 -----TGCGGTTTAGGGTTGATCACTAGTGGGCGCTGCTTTTTATCTATTTGACTGTACATATTGG-CAACAGATTTCTCGATGTCTGCTATGTTCTGGAGGTTCTTAAGGATCCCCTTGAGTTCCCTCT a score=13160.0 s hg17.chr10 55251865 17 + 135413628 GAGGGTCTGTTTTACAC s panTro1.chr8 56162894 17 + 138322177 GAGGGTCTGTTTTACAC s mm5.chr10 56176836 17 - 130633972 GGGGTTCTGCCCCCCAC s rn3.chr20 14527082 17 + 55296979 GGGGTTCCGCCCCACAC s canFam1.chr26 4431322 17 - 41009621 GGGGGTCTGTGTCACAC s galGal2.chr6 27913772 17 - 33893787 GGGGAGGTGGCTCTGGC s fr1.chrUn 137770001 14 + 349519338 GAGGA---GTTTCGGGC s danRer1.chr12 3415572 17 + 24175710 GAGGCTCTGGCTCAGAC a score=14118.0 s hg17.chr10 55251882 71 + 135413628 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCAAGTTGGTCGT-GCATTT s panTro1.chr8 56162911 71 + 138322177 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCATGTTGGTCGT-GCATTC s mm5.chr10 56176853 71 - 130633972 TGCGGGTTGGATGCTGGTGGCTGTGTCGTA---GACGTGGTTTCTCTGGCGTGTGTGGCACTGGCAGT-GCATTT s rn3.chr20 14527099 71 + 55296979 GGTGGGTTGGATGCTGGTGGCTGTGTCGTA---GACATAGTTTCTCTGGCGTGTGTGACACTGGCAGT-GCATTT s canFam1.chr26 4431339 74 - 41009621 ACGGTCGTGGATGCTGGTAGCTGTGCGACAGAGGGCTCCACGTCCTCGGCAGGTGTCACACTGACAGT-GTGCTT s galGal2.chr6 27913789 44 - 33893787 ACTGCGGCCGGTGGTGGTA------------------------------CAGCTGGCTGTTTGGCAGG-GGATTT s fr1.chrUn 137770015 54 + 349519338 TCTGTAGTGGGAGCAGGGG--------------------GTGGTGTTGGCCGGAGAGACACTGGCCGCAGCGTT- a score=9016.0 s hg17.chr10 55251953 19 + 135413628 AACACCTGTTATACAGACA s panTro1.chr8 56162982 19 + 138322177 AACACCTGTTATACAGACA s mm5.chr10 56176924 19 - 130633972 AGCAGCTGGTGCAGAGATG s rn3.chr20 14527170 19 + 55296979 AGCAGCTGGTGTAGAGATG s canFam1.chr26 4431413 19 - 41009621 CACAACTGGTACACAGACA s fr1.chrUn 137770069 19 + 349519338 GGTGCCTCCGAAAGGGACG a score=71637.0 s hg17.chr10 55251972 300 + 135413628 CACTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAACGGAAAGTGGAAAAAATGTaggaggaggaagaggaagagggatagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggaggaggagggggaaggggaCAGGCAGAAGGAGAG s panTro1.chr8 56163001 276 + 138322177 CTCTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAATGGAAAGTGGAAAAAATG------------------------TagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggagaaggaggaggaaggggaCAGGCAGAAGGAGAG s mm5.chr10 56176943 243 - 130633972 CTGTCTGTGGATGGAATGGACGTGGAAGGAGGCTGTGGGAAGAGGCGGGGAGCTGGTGGCCGAGGAGGAGGAGGAAGTGACAGTGGAGGAGGAAGAGGTAGAGAAGAAGTAGGGGGTGTAGAAATGGGAA---GAGAAAATGTAACAAGTTGTGGGGGAGGAGGGTTAGGGGGAGAAAGGGGAAGAGG---------------------------------------AAAAGTGGTAAAGGCAATGGGAGGTCTAGG---------AAGAGGCGGATGTGGGAGGGG---------AGCAGAG s rn3.chr20 14527189 243 + 55296979 CTGTCTGTGGATGGGACGGAAGTGGAAGGAGGCAGTGGGAAAAGGCGGGGAGCTGGTGGTCGAGGAGGAGGAGGAAGTGATGGTGGAGGAGGAGGAGGAAGAGAAGAGGCGGGGGTTGTAGAAATGGGAA---GAGAAAATGTAAGAAGTTGGGGGCGAGGAGGGTTAGGGGAAGAAAGGGGAAGAGG---------------------------------------AAAAGTAGTAAAGGCAATAGGAGGTTGAGG---------AAGAGGCAGCTGTGGGAGGGG---------AGCAGAG s canFam1.chr26 4431432 195 - 41009621 CACGTAGTGGATGGAGCCCAAGACGGAGGGGACAgaggagaaggaagaggaggtgatggt---ggggggagggag---ggaagtgaaggtagaagaggtgatg------------------------------gagaagaag---------agggaggagaaggtggggtggaaagtgggagaaatgg---------------------------aggtggaggaggaagaggaggaggaggaggaggaggggcagg---------------------------tgg---------aggagAG a score=139704.0 s hg17.chr10 55252272 227 + 135413628 ATGTTTGGTGGATGGGCAAAATTTTCAAAAATATTTCTTTCGGTTTCAATAGGTAACATA------CAAATAGGTGTCTCTCTCCTAGAGAGTGAAGAATGTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG s panTro1.chr8 56163277 227 + 138322177 ATGTTTGGTGGATGGGCAAAATTTTCAAACATATTTCTTTCGGTTTCAACAGGTAACATA------CAAATAGGTGTCGCTCTCCTAGAGAGTGAAGAATTTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG s mm5.chr10 56177186 230 - 130633972 ATGCTAGGTGGATGGGGAGCGATCTCAAAAGAGTTCCTTTTTGGTTCTGTATCTGATGCA------CATGTGGGAGTCTCTCTCTTAGAGCTTAAGGAGTTTAAAATACGGGGTCTCAGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACCACATTAGGTTCC------GACCCGAGTTCCACCGCTCTGGAAATCGTTGGCAGAGTTGAGAAAGAAAAGTGAGACCAAGA s rn3.chr20 14527432 230 + 55296979 ATGCTGGGTGGATGGGGAACCATTTCAAAAGAGTTCCTTTTTGTTTCTGTATCGGAGGCA------CAAGTGGGAGTCTCTCTCTTAGAGCCTAGGGAGTTTAAAACGCGGGGTCTCCGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACAACGTCAGGTTCT------GACCCGAGTTCTACCGCTCTTGAAATTGTTGGTAGAGTTGAGAAAGAAAAGTGGGACCAAGA s canFam1.chr26 4431627 227 - 41009621 ATGTTTGGTGGTTTGGGAAGGATTTCGAAAATGTTCCTTCCGGCTTCAACTGTCAACAGA------CATGTGGGCATCTCTCTCCTAAAAACCGGGGAATTTAAAATGCAGGGCATT---GAAGGAGAAAGTTCCAAAGAACAGTCCGCGGGAGAGATGATGACATCAGGTTCT------GCCTGGAGTTCCACAGTTCTCGAAACAGTTGTCAAAGTGGAGTAGGAGGAGTGAGACGAAGG s galGal2.chr6 27913978 239 - 33893787 gTTTTAGGTGGGTCTGGAATGTTTTCTGTAACTTCTCCTTTGGTCTGAGGAGCTAGAAAACTTTGGCAAACGGGTTTCTTTATCCTAAAAGACGGAGGAGTTGGCTTGCGAGTTGGT---GGAGGAGAAAGTTCTTCAGGATAGTCATGGTGAGTGATGATTACAGAGGGGACCGCAGAGGGCTCCGGCTCAACTACTTCACAAGGTGTTGGAGAGGACAGAGGAGAAGAGCGAAGGCAAGG a score=27341.0 s hg17.chr10 55252499 121 + 135413628 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTGTTCCTTCTATCATCAGTGTTTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT s panTro1.chr8 56163504 121 + 138322177 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTCTTCCTTTCATAATCAGTGTGTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT s mm5.chr10 56177416 118 - 130633972 GGAGGAAAAAG-------AAGAGCCA--G--------------------------AAGACA------------------------------------GAGATTTCAGCTGCTCTGTTTGCTGGACGATTAGGGTGTCTCTGTGTC---CCCCTTCTTTCTCTGAC-TCGTGGGCATCTTCAGTTGC--CAGCAGA s rn3.chr20 14527662 118 + 55296979 GGAGGAAAAAG-------AAGAGCCC--G--------------------------AAGACA------------------------------------GAGATTTCAGTTGCTCTGTTTGCTGTACGATTAGGGTGTCTCTGTGCC---CCCCTTCTTTCTCTGAC-CCACGGGCATCTTCGGTTGT--CACCATT s canFam1.chr26 4431854 121 - 41009621 AGAGAGAAATG-------AGGAGTCT--G--------------------------AAGACA------------------------------------GAGATTCCACATGCTGTGCTCCACGTGGGAGCAGGGGCTGGCCTGGCCTTGCTTCTCCTGTCTCGGGC-ACACTGGATTCTCCAGCTGC--AGGCAGG s galGal2.chr6 27914217 193 - 33893787 AGAAGCAAACACACTTTTAGGAGACT--GCTCTAGCGTGTTATCTCTTTCTTGCAAACAGATGCTGTGCGTTGGTGAACGGGTGGATTTGACATCAGGAGATTTCACTTGCTTCATTTCCTGCAAAGCCTGCTGCTCAAATTGTCTTGCCTTCTCTTTTACAGTTAACGTGGGGCCACTTATTTTTTGAAATAGT s danRer1.chr12 3416078 117 + 24175710 AAAACAGAGAG-------AATAATTTCGG--------------------------AAGAGA------------GTGACCCAC---------------GAGAGTCCTGACCTTGCCTCAACTTTAC-------GTCCTGCAAGGCC--------TGCTGCTCAAAC-TGTCGTGCCTGCTCTTTTAC--AGTCAAT a score=18054.0 s hg17.chr10 55252620 34 + 135413628 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC s panTro1.chr8 56163625 34 + 138322177 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC s mm5.chr10 56177534 34 - 130633972 ACGTTGCTGCTACCTCTCTGGCTTGGGTGGCATC s rn3.chr20 14527780 34 + 55296979 AGGTTGCTGCTACCTTGCTGGCTTGGGTGGCATC s canFam1.chr26 4431975 34 - 41009621 GGGTTCCTACTACCTCTCTGGTTTGGAGGGGTTC s galGal2.chr6 27914410 34 - 33893787 GGACTGCTAATATCAACTCTGCTATGCTGATTTT a score=75824.0 s hg17.chr10 55252654 151 + 135413628 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACTGACTCCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG- s panTro1.chr8 56163659 151 + 138322177 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACAGACTGCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG- s mm5.chr10 56177568 151 - 130633972 TGGCGCTTTCGCATTCAGCTCTCTGATTGGTGATCTG------------CCACTCCACCAGGTCTATGGTCTCTGGCCTGTT----TGGGGCT--TTCCACATGAGCCGCCTAGGAAAGCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG- s rn3.chr20 14527814 151 + 55296979 TGGTTTTTTCGCATTCAGCTCTCTGCCTGGTGATCTG------------CCACTCCACTAGGTCTATGGTCTCTGGTCTGTT----TGGAGTT--TTCCACATCAGCCGCCTAGGAAACCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG- s canFam1.chr26 4432009 151 - 41009621 CAGGGCTTTCCTTCCCACCTTCCGGCCTGCGGCTCCT------------CCGTGGCTCCAGCTCTAGGGTTTCTGGCCTTCT----GGGAAGT--TCCCACACTGGTCTCTGAGGGAAGCACACTGGCTGATGCCATATCCTCTGAAACATTTCCCTTGGGCCCCTCAG- s galGal2.chr6 27914444 139 - 33893787 CAGTTCCTTCATTCTCTGCTTTGAGTCTTTCCTGTTG------------CCACTGAACAGGGTCCATGATAACCGGCCTGCT----CAGAGAA--CCAGGCGCGTGCCTCTTAGTAACGTGAGCTGGTACTGTCCATGCACGGTGACT------------GCCTCCCAA- s danRer1.chr12 3416235 163 + 24175710 CAATCATCTCCTTGCTGTCCTTAAGGCTGGCCTTTAGCAGCTGCAGCTCCCACTGAACTGGATCCATCACCACCCTCCTACTCCGCTGAGATTCGTCCCACTTGTGCAACCGAG--AAGGTAATGTCCAG-----GAATGTCCTGAGCCTGAATTCGGGAATCCCATAAT a score=17919.0 s hg17.chr10 55252805 66 + 135413628 AGACTTACTCTTGGCTTGTATTTTGGGTGAAAATGGGTCTACAAAATC---TGTTCTCTGTGAAATGTC s mm5.chr10 56177719 66 - 130633972 AGACTGACTCTTAACTTGTGTTCTGGGTGCCAACAGCTCTTCAAAATC---TGTTCGTGGCTGAAGGTC s rn3.chr20 14527965 66 + 55296979 GGACTGACTCTTAACTTGTGTTCTGGGTACAAATAGCTCTCCAAACTC---TGTTCCAGGCTGAAGGTC s canFam1.chr26 4432160 66 - 41009621 GGACTTACTCCTGGCTTGTGTTTTGGGCAAAAATGAGTCTATAAAATC---TGTTCTTAGTAAAAAGTC s galGal2.chr6 27914586 69 - 33893787 GGCATCTCTCAAGACTAATTGCATAGGAGAAAGAGTATCTAGGGCATCGCTTCTTTTCCGCAGTAACCC s danRer1.chr12 3416398 52 + 24175710 GGACTTACTCAGACCTCTCATACTGGGTGAATACATGTCTAAGAGGTA---ACTC-------------- a score=243755.0 s hg17.chr10 55252871 253 + 135413628 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCCTCATCAGATAGAAATGTGAATTTTCTTGCAGACTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAAGA s panTro1.chr8 56163914 253 + 138322177 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCTTCATCAGATAGAAATGTGAATTTTCTTGCAGCCTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAATA s mm5.chr10 56177785 253 - 130633972 TGAGTTTGTTGAC--------CTTTGACCTATACTTTCCATGTAAAGGGGATTATGGGTACTTAAGTTATCCTCATCAGGAACAAATGAGAACGTCCTTGCTGGGTTAGGCTGGCTCTCCTTAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCATCGCGATGACTGCTCCTGTCTTCTGGGACTGAGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA s rn3.chr20 14528031 250 + 55296979 GGAATTTGTTGAC--------CTTTGACCTATACTTTCCATATAAAGGGGGTTATGGGTACTTAAGTCATCCTCATCTGGAAGAAATGAGAACGTCCTTGCTGGGTTAGCTTGGTTG---TCAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCGTCACGATGACTGCTCCTGTCTTCCGGGACTGGGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA s canFam1.chr26 4432226 253 - 41009621 GGAGTTTGTTGGT--------CTTGGATCTACAGCTTCCTTATAAAGAGTACTGTGGAGACTGAAGGCGTCCTCCTCAGACATCAGTGTGAACTTCCTTGCTGACTTGGGCTGGTTGTTCCTAAGGGATCCATCTACATGAGCCTGCTTGTGAGCCTCAATAGTGCTGGAAGGAAAAGGCATCACACTGTGTGGACTTTTCCTGTCTTCTGAGACTGACTTATCTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGGA--------AAAGA s galGal2.chr6 27914655 253 - 33893787 AGCAGCAGCAGGA--------CTTTGAGTGACACCTTCCACATACAGTGGGTTTTGAGTAGTTAGTGGGTTCTCGTCAGATAAGAAAGTAATGTTACTTGAAGATTTGGGGAGGTTATTGTTCAATGATCCATTGATATTAGATTGCTTGTGAGCCTCAATAGCACGGGAAGCAAAGCTGCTTATAACTCTCTGCCGATCTCCTTCTTCTAAGACTGACTTTTTTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGAA--------AAAGA s danRer1.chr12 3416450 277 + 24175710 CGATTTTGGTGCTCAGGGCTGCCAAGAGTGACATCATCACGGTACAGGGGGTTGGTTGTAGTAAGTGGGTTGTCATCTGAAAGAAAGGTAATGTTGCTCTCCGACTTGGGAAAGTTGTTGAGCAGGATTCCGTTGGCGGTGGACAGCTTGTGAGCAGTGATAGCACGGGAAGCGAATGAGCTAATGAGACGCTGCCGATCACCATCCTTCAGAACACACCTCTTAGTCCTGATTTCAGCAAGTGTGGAAAGAGATAAAGATGAACTTAACAGAGAAT a score=136951.0 s hg17.chr11 116124407 94 + 134452384 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT s panTro1.chr9 118123572 94 + 136640551 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT s mm5.chr9 77776147 94 - 124177049 TCAC--ATATCCTCCACACTCCACTTGTAGGCAAGCTCCTCCACAGCCTTCTTGCTGGCGAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT s rn3.chr8 79766056 94 - 129061546 TCAC--ATGTCCTCAACACTCCACTTGTAGGCAAGCTCCTCCACAGCTTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT s canFam1.chr5 72268290 94 - 92064832 TTAC--ATATCCTCAACACTCCACTTGTAGGCAAGTTCCTCCACCGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT s galGal2.chr24 4774582 96 + 5910111 TTGCGAAAGTCTTCAATGCTCCACTTGTATGCAAACTCCTGAGCTGCCTTCTTGTTGGCCATCCTGGCAAAGAACTGCTGCTCAAATCCATTGGAC s fr1.chrUn 206483220 94 + 349519338 TCAC--ATATCTTCTACACTCCACTTATAGGCTGCCTCCTGAGCAGCTCTTTTATCTGCCATTCTCTCATAGCGTTTCTTCTCAAAACCATTTGAC a score=311622.0 s hg17.chr11 116206508 55 + 134452384 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC s panTro1.chr9 118206938 55 + 136640551 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC s mm5.chr9 77840023 55 - 124177049 ATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCC s canFam1.chr5 72342544 55 - 92064832 ATGCAGCCCCGGGTCCTCCTCGTCGCTGCCCTCCTGGCGCTCCTGGCCTCCGCCC a score=21699.0 s hg17.chr11 116211733 24 + 134452384 TCACTGGGTGTTGAGCTTCTTAGT s panTro1.chr9 118212083 24 + 136640551 TCACTGGGTGTTGAGCTTCTTAGT s mm5.chr9 77844334 24 - 124177049 TCACTGGGCAGTCAGAGTCTCGCT s canFam1.chr5 72346944 24 - 92064832 TCACTGCGCGTTCAGCTTCTTGGT a score=166504.0 s hg17.chr11 116211757 354 + 134452384 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCTGCGCGCAGCGGCTCCAC s panTro1.chr9 118212107 354 + 136640551 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCGGCGCGCAGCGGCTCCAC s mm5.chr9 77844358 348 - 124177049 GGCCTTGTCGATCACACTCTGG---------ACTTGGGTCTTAAGCGTCTCCAGCATGGGCATC-AGACTATGGCGCAGGTCCTCCAGCGCAGGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGC------TCTTGAGCTCAGCCAGGCGCTGGGCCAGGCTCTCGCGCATCTGTTCGCTGTGGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTGCGCATGCGGTCGCGAAATTCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTGCAGCTTCTGGCGCGCGCTCTCCTGCAGCTCGGCGCCCAGAGGCGCCAC s canFam1.chr5 72346968 354 - 92064832 GGCCTCGTCGATGGCAGCCAGC---------AGGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGCAGGTCCTCGAGCGCGGGCCTGGCCTTCTCGCCGAGCGCGCTCAGCTGCTCGCTGGCCCTGGCGTGGTACTCGGCCAGGCTGGCGCCGCCGCCCTCCTTGAGCGCCTGCAGCCGCGCGGCCAGGCGCTCGCGCAGGTCGTCGCTGTAGGGGGCCAGCTGGGCGCGCAGCGCGTCCACGTGGGTGCGCGCGCGGTCCCGCAGCTCCTCGCCCAGCGGGCTCAGCTTCTCCTGCAGCTCCTGCAGCTTCTGGCGCGCGCCCTCGCGCAGCTCCGAGCCCAGCGGCGCCAC s galGal2.chr24 4799439 363 + 5910111 GGACTTCTGGAGTTCGTCCAGGAAGGAGATCAAGCGGTTCTTGAGGTTCT-CAGCATAGGGGGTGAGGCGCTCCCTGAATTCCTGCACCAGAGGCGTCATCTTCTCACGCAGGTTGCTGAGCTGCTCCATCACCTTGGCCTGGTACTCGGAAGCCTGGGGGATGCCCTTCTCGCGGATCTCCTCCAGCTTCTGGCTCAGCTTCTGCCGCAGCTCATCGCTGTATGGCGCCAGGTTCTTGCGCAGCTCCTCCACGTGCCCACGCAGACGATCCCGCGCCTCCTCAGCCACCGGGGTCAGCTTGGCCTGCATCAGCTCCACCTTCTGCTTGGTGAGCTCCTTCAGCTCCTGAGCCACGGGCGTCAG a score=84013.0 s hg17.chr11 116212111 105 + 134452384 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG s panTro1.chr9 118212461 105 + 136640551 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG s mm5.chr9 77844706 105 - 124177049 CTTCTGGCGGTAGAGCTCCACATCCTCTTTCCATTTCTTCTGGAATTCGTCCAGGTAGGGCTGCACCTTCTGTTTCACTTCCTCTAGGTCCTTGTTCATCTCCTG s rn3.chr2 192507462 102 + 258222147 CTCCTCTCGGAAATGCACGATCTCATCCTGC---TTCTCCTGCAAGTCTTCCAGAAGCTGCCGCCGCTCAGCCTTCTGCTGCTCCAGCTCCTTCTCCAGCTCCTG s canFam1.chr5 72347322 105 - 92064832 CTTCTGGCGGTACAGCTCCACCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTCTGCTTCACCTCCTCCAGGTCCTTGCTCATCTCCTG s galGal2.chr24 4799802 105 + 5910111 GCGCTGGCGGTACTGCTCCAGCTCCTCCGTCCACTTGGCGGAGAACTGGTCCAGGAAGGGCCGGATCTTCTCCTTCACCTCCTCCAGGTCCTTGGTCAGCTCAGC a score=57194.0 s hg17.chr11 116212216 121 + 134452384 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG s panTro1.chr9 118212566 121 + 136640551 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG s mm5.chr9 77844811 121 - 124177049 TCTCACCCAATCTGTTTCTTTCTCCAGGTTATCCCAGAAGTCCCGAGTCAATGGGCCCAGCCGTTCCTGCAGCTGACTAACGGTTGAACCCAGAGTGTCCCAGTTTTCCAGGAGATTCAGG s canFam1.chr5 72347427 121 - 92064832 CCGCAGCACCTCCGTCTCCTTCTCCAGGTTATCCCAGAACTCCTGCGTGACCGGGCCGATCTGTTCGCGCAGCTTGGTCACCGTGCTGCTCAGGCTGTCCCAGTTGTCCAGGAGTTTCAGG s galGal2.chr24 4799907 121 + 5910111 ACGCAGAGCCTCGGTGTCCTTCAGCCACATCTCGCGCACCTCCTTGTAGTAGGGAGCCATGTCCTCACGCAGCTTGGCAGCCGCGGCACTCAGCGTGTCCAGGTTGTCAGCCAGCTTCAGG a score=4872.0 s hg17.chr11 1812377 30 + 134452384 ATGCTCCACCTGCATGGCTG--------------GCAAACCATG s panTro1.chr9 2001217 30 + 136640551 ATGCTCCACCTGTATGGCTG--------------GCAAACCACG s mm5.chr7 130142453 26 + 133051633 -----CCAACTGGACTACCGT-------------GTAGAAGATG s rn3.chr1 202843225 26 + 268121971 -----CCAACTAGACTGCCTT-------------GTAGAAGATG s canFam1.chr18 56425269 44 + 66173745 AGGCTCCACCTGTGTGACTCCACCCGTGTGACCGACAAACCATG s danRer1.chrNA 165962846 24 - 390413307 -----AGTTCAGGAAGTCCA--------------GGAAGAGA-G a score=333744.0 s hg17.chr12 38440094 227 + 132449811 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC s panTro1.chr10 39016533 227 + 135301796 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCGTAGACGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC s mm5.chr15 91666098 227 + 104138553 TTACTCCACGTCAGAAGCGTCGTTGTCGGAGAGATGATAGTTGCTTCCCTTCACGCGGATGTACTCAATGTACCTCCCTTCATCCGAGTCGG---CAGCGCCACATGAACATAGCCGGTGGTCAAAGAGCGATTCGATTTCCTCCAATTTTTTCCCCTTGGTTTCAGGGAGGCAGCCATAGACAAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAATGCTC s rn3.chr7 129719269 227 + 143082968 TCACTCCACGTCCGAGGCGTCGTTGTCGGAGAGATGGTAGTTACTTCCCTTCACGCGGATGTACTCGATGTACCTGCCCTCGTCCGAGTCCG---CGGTGCCGCAGGTGCACAGCCGGTGGTCGAAGAGCGATTCGATTTCCTCTAGTTTTTTCCCTTTGGTTTCAGGAAGACAGCCATAGACGAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAACGCTC s canFam1.chr27 32235556 227 - 49087461 TTATTCCACATCAGAAGCATCGTTGTCAGAAAGATGATAGTTACTTCCCTTCACCCGAATATATTCAATATATCGCCCTTCATCAGAATCTG---AAGCACCACATGTACATAACCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTCCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACACCAGCGAATCCAGCATACAGGAAGAAGGCTC s galGal2.chr1 179729132 227 - 188239860 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGGTAATTACTTCCCTTCACCCGAATATATTCAATATACCTCCCTTCATCAGAATCTG---ACATACCACATGTACATAGCCTGCTTTCAAACAAAGATTCAATTTCCTCTAGTTTTTTCCCTTTAGTCTCAGGAAGGCAGCCATAGATGAAAAGGAGTCCCAGGCCAGCAAACCCTGCGTACAGAAAGAAGGCTC s fr1.chrUn 213944794 227 + 349519338 CTAGTCCACATCAGAGGCGTCGCTCTCAGACAGGCGGTAGTTGCTGCCCTTTACCCGGATGTACTGCACGTTCCGGCGGTCGTTGCGGGAGG---AGGCTCCGCAGGAGCAGAGCGGACCGGAGAACAGGCTCTCGATGTCCTCCAGCTGCAGGCCCTGGGTCTCCGGGAGGCAGCCCAGGATGAAGAAGAGGCCCAGCACCACCAGGCCAGCGTACATGAAGAACGCCC s danRer1.chrUn 27538197 206 + 367113659 TCACTCCTCCTCATCCTCGTCTTCATCAGAG---CGGGAGTTTCCTCCGTTTACCCGCATGTACT---------------------GATCTGTGTGGGCTCCGCAGCTGCAGAGTCGCCTGCTGAACAGAGACTCGATCTCCTCCAAGCGCAAACCCTTGGTCTCCGGCAGACACCCCGACACGAACACGAAGCCCAGCAGAGCCAGAGCAGCGTACAGGAAAAACGCTC a score=115495.0 s hg17.chr13 112381694 259 + 114142980 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCCGTGATGAATCCCG-TGATGAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG s panTro1.chr14 95994697 259 + 97804244 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCTGTGATGAATCCCG-TGATGAGCCGCTGATCCGAGCTCGGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG s mm5.chr8 12764663 188 + 128688707 ATTTGTTCACCAGAG----TGTCCTGGCCTCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAAGGACGCA---ATGTAGGGCTCC---------ATGGA------------GGAGGGAGG-TCTGTGTGACA-----------------------------------------CTGGGACTTGCCACAGGTCAG--TGATTGTTCAGAGGTCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG s rn3.chr16 8607378 190 - 90224819 ATCCATTTACCAGAG----CGACCTGGCCTCCTGCCTAGGGGGGCTCATTCCCAAGG-ACCGGTCT-TGAAGGGTGTA---TTATATGGTTTC---------ATGAA-----------GGGAGGGAGG-TCTGTGTGACC----------CTGGGACACCGCT------------------------------ACAGGTCAG--TGATTGTTCGGAAGTCACAGGAATGCCACCCTCAGGAAGAGTTATCTATCTTTTCCAG s canFam1.chr22 63116876 177 + 64236280 A------------------TGTGCTGGTCTGCTCAGGGCAGGAGCTCTTCGCCGGAT-GTCAGTCC-CGA--GACGCACATGCCTGGGCTTCT-------------CCCTCACAGGACTGCAGCAAGGACCACCACGGTGGACACTGAGGAGGCCCCGCCAGGCCGA----------------GGGATGGAGGAGAGGCCAT--CGATG------GAGCAGCATGGGGTCGTCAT--------------------------G a score=694393.0 s hg17.chr14 98710240 325 + 106368585 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg s panTro1.chr15 99208107 324 + 106954593 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTA-GGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg s mm5.chr12 102664235 325 + 115071072 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTCTTGAAGACCTTGCCGCAGTACTCACATGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC s rn3.chr6 132299612 325 + 147642806 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTACTGTAGACACTGAAGGGCATCTGGCAGATATCGCAGCGGTACACCTCCTTGCCGATCTGACCGTGCGTCTTCATGTGGCGCGTAAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTTTTGAAGACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC s canFam1.chr8 70559093 325 + 77374719 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAGGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGCCGGCCCTCCTTGGAGCTc s galGal2.chr5 44593849 325 + 56310377 TTAGCTTCTTTCTGCCTGCTCAATTTTGACGTCATTTGTCAGCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAAACACTGAAGGGCATCTGGCAAATGTCGCAGCGGTAGACCTCCTTCCCTATCTGGCCATGCGTTTTCATGTGACGCGTCAGCTTACTGCTCTGGGCACATGCATAGTTGCAGAGCTCGCATTTGTAAGGCCGCTCTCCAGTGTGGCTCCGACGGTGCACCGTCAAATTGCTGCAGTTCTTAAAGACCTTGCCACAGTACTCACATGTATCGCTCCTGCGCCCTTCCTTCGAGCTG s fr1.chrUn 275909939 325 + 349519338 TTACACCGTCTCTGCTTGTTCCAGTTTGATGTCATTGGTCATCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGAGTGCTGTACACACTGAAAGGCATTTGGCAAATGTCACAACGAAAGACCTCCTTACCAAGCTGGCCATGCGTCTTCATGTGGCGCGTTAGCTTTGAGCTCTGGGCACACGCGTAGTTGCACAGCTCACACTTGTAGGGCCTCTCACCCGTGTGACTGCGTCGGTGCACTGTCAGGTTGCTGCAGTTTTTAAAAACTTTGCCACAGAACTCACAGGTGTCAGACCGCCGGCTGTCCTTTGAGCTG s danRer1.chrUn 103629515 325 + 367113659 TTAGCTTCTCTCTGCTTGTTCAATTTTGACCTCATTCGTCATCAAATGTTCCCCATGCCACTTTTTCATGTGTTTCTCAAGCGTGCTGTAGACGCTGAAGGGCATTTGGCAAATGTCACAGCGGTACACTTCCTTACCGAGCTGGCCGTGTGTCTTCATGTGGCGGGTGAGCTTGCTGCTCTGGGCGCAGGCGTAGTTACAAAGCTCACACTTGTAGGGCCTCTCGCCTGTGTGGCTGCGTCTGTGCACTGTCAGATTGCTACAGTTCTTGAACACCTTCCCACAGTACTCACAGGTGTCACTCCTCCGGCTCTCTTTCGAGCTA a score=20235.0 s hg17.chr14 98710565 24 + 106368585 ggccgcccggggcccgggccgccc s panTro1.chr15 99208431 24 + 106954593 ggccgcccggggcccgggccgccc s mm5.chr12 102664560 24 + 115071072 GGCCTCCCAGGACCCGGACCACCC s rn3.chr6 132299937 24 + 147642806 GGCCGCCCAGGACCCGGGCCACCC s canFam1.chr8 70559418 24 + 77374719 ggccgcccggggcccgggccgccc a score=4011.0 s hg17.chr14 98710589 2 + 106368585 AG s panTro1.chr15 99208455 2 + 106954593 AG s mm5.chr12 102664584 2 + 115071072 AG s rn3.chr6 132299961 2 + 147642806 AG s canFam1.chr8 70559442 2 + 77374719 AG s fr1.chrUn 275910285 2 + 349519338 AG s danRer1.chrUn 103629867 2 + 367113659 AG a score=517186.0 s hg17.chr14 98710591 277 + 106368585 GTGCGGGGTGCTGCCTCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC s panTro1.chr15 99208457 277 + 106954593 GTGCGGGGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC s mm5.chr12 102664586 277 + 115071072 GTGAGGTGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCGGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTTGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGATGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAATGGGTCCTTCATGAAGTGGCGCGATGCTGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCAGATGGGATGAGGGCGGCAGGTGGCAGCTCCAGGTCTTTCTCCACCTTGATGCGC s rn3.chr6 132299963 277 + 147642806 GTGAGGCGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTGGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGACGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGGCGCGACGCCGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGATGGGATGAGGGCGGCGGGTGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC s canFam1.chr8 70559444 277 + 77374719 GTGCGGCGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGGCGCGCGTCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGCCGCGACGCGGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC s galGal2.chr5 44594200 277 + 56310377 GTGGGGGGTGCTGCCTCCGGAGGCCGTGCCGCTGCGCCCTGAGAGCCCCCCATCCAGCATGTCCCCCGGCGGGGTGGAGAAACGCAGGCTCCCATTCTCCGACGAATGCTCGGAAGAGGTGGCGAAGGGAGATTGTCGGGAGTCTGTGAATCCTAGAAACGGATCCTTCATGAAGTGCCTTGATGCCGCGTACCCTACCAGCCACTGGGAGTAAACATTTTCGGAAGGTATTATTGTTGCTGGTGGCAAGTCCAAATCTTTCTCAACTTTTATTCGT s fr1.chrUn 275910287 277 + 349519338 GTGAGGCGTGCTGCCTCCACTTGCGGTCCCACTACGGCCCGACAAGCCACCGTCCATCAGGTCTCCTGGGGGCGTGGAGAAGCGCAGGCTTCCATTTTCAGAGGAGTGCTCCGATGAAGTGCCGAAGGGAGATTGTCTCGAGTCACTGAAGCCTAGAAAAGGGTCTTTTATGAAATGGCGAGAGGCAGCATAGCCCACTAACCACTGGGAGTAGACATTTTCAGAGGGTATGAGGGGTGCCGGGGAACCATCCCCGTCCTTCTCTGTCTTTATCCTC s danRer1.chrUn 103629869 277 + 367113659 GTGCGGGGTGCTGCCTCCGCTAGCAGTACCACTGCGGCCGGAGAGGCCCCCGTCCAGCAGGTCCCCTGGCGGCGTAGAGAATCGCAAGCTTCCGTTCTCGGAGGAGTGTTCCGAGGAGGTGGCGAATGGAGATTGTCTGGAGTCGGTGAAGCCAAGGAAAGGATCTTTGATGAAGTGGCGGGATGCTGCATAGCCCACCAGCCACTGGGAGTAGACATTTTCAGATGGGATTAGGGGGGCTGGGGGTATGTCCAAATCCTTTTCAATTTTGATCCTC a score=56079.0 s hg17.chr14 98710868 71 + 106368585 TTG------------GCGGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC s panTro1.chr15 99208734 71 + 106954593 TTG------------GCGGAG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC s mm5.chr12 102664863 83 + 115071072 TTGGCCGCGTGCAGCGCGGGA---CCACCGAGCCCAGGGCTGGGCAGCGGTGCTGGCTTGCGTGGGAAGAGAGCTGGAAAGGG---------------------------------------CTC s rn3.chr6 132300240 83 + 147642806 TTGGCCGCGTGTAGCGCAGGA---CCACCAAGCCCCGGGCTGGGCAGCGGTGCGGGCTTGCGTGGGAAGAGCGCTGGGAAGGG---------------------------------------CTC s canFam1.chr8 70559721 71 + 77374719 TTG------------GCCGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCCGGCTTGCGCGGGAACAGCCCCGGGAAGGG---------------------------------------CTC s galGal2.chr5 44594477 110 + 56310377 TTA------------GATGAG---TTATTTAAGCTGGGGCTTGTGATAGGTGTTGGCTTCCGAGGGAACAAGTTTGGGAAGGGCTCGCCTGGGCCAAAGTTTCTTCCATTGACTGTCCCCTCCTC s fr1.chrUn 275910564 85 + 349519338 TTACTC---------ATGGAG---TTAGCCAGGCCAGAACCAGCGACGGAAGCGGGTTTGTAGGGAAATAAGCTTGGAAGAGA----------------------------ATCATCCGATCCGC s danRer1.chr5 4282954 74 + 40038624 TTG------------GCGGAAGATCCAGAGAGGCTGGAGCTGGAAATGGGCATTGGCTTACGATGGAACATCGCAGAGATGGA---------------------------------------ATC a score=4995.0 s hg17.chr14 98710939 5 + 106368585 GGTGC s panTro1.chr15 99208805 5 + 106954593 GGTGC s mm5.chr12 102664946 5 + 115071072 TGCGC s rn3.chr6 132300323 5 + 147642806 TGCGC s canFam1.chr8 70559792 5 + 77374719 GGCGC s galGal2.chr5 44594587 5 + 56310377 GGTGC s fr1.chrUn 275910649 5 + 349519338 TGTTC a score=9825.0 s hg17.chr14 98710944 10 + 106368585 CTGGCGCGAA s panTro1.chr15 99208810 10 + 106954593 CTGGCGCGAA s mm5.chr12 102664951 10 + 115071072 CTGGCGCGAA s rn3.chr6 132300328 10 + 147642806 CTGGCGCGAA s canFam1.chr8 70559797 10 + 77374719 CCGGTGCGAA s fr1.chrUn 275910654 10 + 349519338 CTGCCATTAA a score=42070.0 s hg17.chr14 98710954 72 + 106368585 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc s panTro1.chr15 99208820 72 + 106954593 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc s mm5.chr12 102664961 69 + 115071072 GGCCCCGCCGCGCCCGTTCACTGCACCCGGTGCACCCGCGTCCCCACAGCCAACAG---CTCCGGCATCACC s rn3.chr6 132300338 69 + 147642806 GGCCCCGCCACGCCCGTTCACTGCGCCCGGTGCACCTGCATCCCCGCAGCCACCAG---CTCCGGTGTCACC s canFam1.chr8 70559807 72 + 77374719 gccgccgccgcgcctgttgaccgcgccgccggtgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc a score=1846.0 s hg17.chr14 98711026 19 + 106368585 cgcgtccccgccgcccgcc s panTro1.chr15 99208892 19 + 106954593 cgcgtccccgccgcccgcc s mm5.chr12 102665030 10 + 115071072 CGTGTCGC---------CT s rn3.chr6 132300407 10 + 147642806 CGCGTCGC---------CT s canFam1.chr10 63975552 18 + 72717409 AGTGTCCCTGTGGGCC-TC a score=1381.0 s hg17.chr14 98711045 5 + 106368585 GCACG s panTro1.chr15 99208911 5 + 106954593 GCACG s mm5.chr12 102665040 5 + 115071072 GCACG s rn3.chr6 132300417 5 + 147642806 GCACG s canFam1.chr10 63975570 2 + 72717409 G---G s fr1.chrUn 86333360 5 + 349519338 GGATA a score=13475.0 s hg17.chr14 98711050 19 + 106368585 CTTCAGGAAGGC-GCCGCGC s panTro1.chr15 99208916 19 + 106954593 CTTCAGGAAGGC-GCCGCGC s mm5.chr12 102665045 19 + 115071072 CTTCAGGAAGGC-GCCCCGC s rn3.chr6 132300422 19 + 147642806 CTTCAGGAAGGC-GCCTCGC s canFam1.chr10 63975572 20 + 72717409 CCTCGGCCAGGTGGCCGCGC s galGal2.chr5 44594680 19 + 56310377 TTTCATGAAGCT-ACTCCTC s fr1.chrUn 86333368 19 + 349519338 CCCGGTGAAGTC-GTGCTGC a score=43602.0 s hg17.chr14 98711069 105 + 106368585 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg- s panTro1.chr15 99208935 105 + 106954593 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg- s mm5.chr12 102665064 87 + 115071072 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAGGGCCAGAGCCTTCTCATCCGCCAGAGCCGCA- s rn3.chr6 132300441 87 + 147642806 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAATGCCAGCGCCTTCTCATCTGCCAGAGCCGCA- s canFam1.chr10 63975592 92 + 72717409 TTATGCTTCTCGCCCAGGA---------CCTGGTGGAAGGCCTCGCTGAAG-TGCTGCATGGAGCTGAGCACCATGCCCTGCATGACCTCGGGCAGCG-------------------------CGCG- s galGal2.chr5 44594699 105 + 56310377 TTCTGTTTCTCAGCTAGCA---------------------TGTCATTGTAT-TGCTGGATGGCACCGAGACTTACATTCTCTATCACTTTTCCCAGGACAAGGGATTTCTCATCTGGCAGTGATTTG- s fr1.chrUn 86333387 120 + 349519338 TTCTCGTAGTGCTCCCGCAGACGTCTCAGCAGCGTGAAGGTCTTGTCGCACATGGTGCACTGCA--TGGGCCGGTG-----CATGAGCTTGTGCCGCTCGAACGCCGGCTCGTTGGCGAGGATCTTC- s danRer1.chrUn 103630787 106 + 367113659 TTCCGATTGTCAACTATTA---------------------AGTTATTGTAC-TGCTGGATGGAGCTGAGCCCTACATTTTCCACCATCTTTCCTAACGAAAGGGTCTTCTCATCTGAAGGAGGCTTTG a score=10567.0 s hg17.chr14 98711174 32 + 106368585 gccgcgccgccccccgcgcccgggaccccggg s panTro1.chr15 99209040 32 + 106954593 gccgcgccgccccccgcgcccgggaccccggg s mm5.chr12 102665151 29 + 115071072 GCTG---CAGCCCCTGCGCCCGCCACCCCCGG s rn3.chr6 132300528 29 + 147642806 GCTG---CAGCCCCCGCGCCCGCCACCCCTGG s canFam1.chr10 63975684 26 + 72717409 GCCC--TCGTCGCCCACGCCCACCACCG---- a score=4398.0 s hg17.chr14 98711206 12 + 106368585 cACCCCAC---CACC s panTro1.chr15 99209072 12 + 106954593 cACCCCAC---CACC s mm5.chr12 102665180 12 + 115071072 TGGCACGC---CACC s rn3.chr6 132300557 12 + 147642806 TGGCACAC---CACC s canFam1.chr8 70560183 15 + 77374719 CACCCCGCCCACGCC a score=-114.0 s hg17.chr14 98711217 1 + 106368585 C s fr1.chrUn 275910877 1 + 349519338 A a score=135397.0 s hg17.chr14 98711218 72 + 106368585 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG s panTro1.chr15 99209084 72 + 106954593 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG s mm5.chr12 102665192 72 + 115071072 TCCGTTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGCCGGCTCTCGTTCTCCAG s rn3.chr6 132300569 72 + 147642806 CCCATTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGTCGGCTTTCATTCTCCAG s canFam1.chr8 70560198 72 + 77374719 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG s galGal2.chr5 44594806 72 + 56310377 GCCGTTTTCTCGGTTACGACTCAGCTCTGAGTCCATACTAAAGCTTGACTCTGGCCTGCTCTCATTTTCCAA s fr1.chrUn 275910878 72 + 349519338 GCCGTTCTCCCTGTTCCGGTATAATTCGGACTCCATGCTAAAGTTTGATTCTGGTCGACTCTCACTCTCTAG s danRer1.chrUn 103630894 72 + 367113659 GCCATTTTCCCTATTCCGACAGAACTCAGAGTCCATGCTGAAGTTTGACTCAGGCCTGCTTTCATTTTCCAA a score=501.0 s hg17.chr14 98711290 1 + 106368585 T s panTro1.chr15 99209156 1 + 106954593 T s mm5.chr12 102665264 1 + 115071072 C s rn3.chr6 132300641 1 + 147642806 C s canFam1.chr8 70560270 1 + 77374719 C s galGal2.chr5 44594878 1 + 56310377 C s fr1.chrUn 275910950 1 + 349519338 t a score=295.0 s hg17.chr14 98711291 1 + 106368585 A s panTro1.chr15 99209157 1 + 106954593 A s mm5.chr12 102665265 1 + 115071072 A s rn3.chr6 132300642 1 + 147642806 A s canFam1.chr8 70560271 1 + 77374719 A s galGal2.chr5 44594879 1 + 56310377 t a score=33922.0 s hg17.chr14 98711292 47 + 106368585 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC s panTro1.chr15 99209158 47 + 106954593 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC s mm5.chr12 102665266 44 + 115071072 GCAGCTCCTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC s rn3.chr6 132300643 44 + 147642806 GCAGCTCTTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC s canFam1.chr8 70560272 47 + 77374719 GCAGctcctcctcctcctcctcctcctcctcgtcgtcctcctcGGGC a score=21186.0 s hg17.chr14 98711339 20 + 106368585 TCGTGGCCCAGCGACGGGTC s panTro1.chr15 99209205 20 + 106954593 TCGTGGCCCAGCGACGGGTC s mm5.chr12 102665310 20 + 115071072 TCGGGGCCCAGAGATGGGTC s rn3.chr6 132300687 20 + 147642806 TCGGGTCCCAGAGATGGGTC s canFam1.chr8 70560319 20 + 77374719 TCGTGGCCCAGCGACGGGTC s galGal2.chr5 44594918 20 + 56310377 TCATGGCCCAGGGAGGGATC a score=13223.0 s hg17.chr14 98711359 13 + 106368585 GCTCTCGTGGTGG s panTro1.chr15 99209225 13 + 106954593 GCTCTCGTGGTGG s mm5.chr12 102665330 13 + 115071072 GCTCTCATGGTGG s rn3.chr6 132300707 13 + 147642806 GCTCTCATGGTGG s canFam1.chr8 70560339 13 + 77374719 GCTCTCGTGGTGG s galGal2.chr5 44594938 10 + 56310377 GCTCTCA---TTC s danRer1.chrUn 103631014 13 + 367113659 GCCCTCGCCTTTG a score=0.0 s hg17.chr14 98711372 3 + 106368585 CGG a score=4230.0 s hg17.chr14 98711372 3 + 106368585 CGG s panTro1.chr15 99209238 3 + 106954593 CGG s mm5.chr12 102665343 3 + 115071072 CGG s rn3.chr6 132300720 3 + 147642806 CGG s canFam1.chr8 70560352 3 + 77374719 CGG s galGal2.chr5 44594948 3 + 56310377 CTG s fr1.chrUn 275910990 3 + 349519338 TGG a score=1089095.0 s hg17.chr14 98711375 631 + 106368585 AAGTCACCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCTGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT s panTro1.chr15 99209241 631 + 106954593 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCCGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT s mm5.chr12 102665346 625 + 115071072 AAGTCGCCATCGGCCGCTTTCAGG---TCACCTGGCAGCTCGCTGGTGCCCGGCTCAGGGGAGCTGGCAGCTGAGAGCCCGTCGTCTGAGCGGCCAGCCAGAGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCATGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGTGTGCCCGCA---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGACTGGGCTGGAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCGGCCAGTTCTCGCAGCCGCCGGGAGAAGTCCATGGCAGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCTGGCAAGCGGCCCT s rn3.chr6 132300723 625 + 147642806 AAGTCGCCATCGGCCGCTTTGAGG---TCACCTGGCAGCTCGCTGGTGCCGGGCTCTGGGGAGCTGGCGGCCGAGAGCCCATCGTCTGAGCGGCCAGCCAGCGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAATTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGCGTGCCCGTG---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGGCTGGGCTGAAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGTG---TGGAGCTGTTACCGGCCAGTTCTCGCAGCCGCCGAGAGAAGTCCATGGCGGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCGGGCAGGCGGCCCT s canFam1.chr8 70560355 631 + 77374719 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCGGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTggcgggcggctgcggcggcggcgtgcccccggggggcATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGAGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTGAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGCGGGCTGAAGAGCGGCGGCGTGCCGGGCAGGCGGCCCT s galGal2.chr5 44594951 631 + 56310377 AAGTCTGTCTCACTGGATTTCAGTCCCTCTCCAGTGAGCTCGCTCGTGCCTGGCTCAGGAGAACTCGTGGTGGACAGTCCATCGTCTGACCTGCCTGTCATGGAGCCAGCTTTATGCATATGCGTTTTCATGTGACGCTTTAGCTTGCTGGCCTGGGAGCAAGCATGGTCACATAGCTGACATTTGTAGGGCTTTTCTCCTGTGTGACTACGCCGGTGGACGATAAGGTTGCTCTGGAACTTGAAGGTTTTCCCACAGAATTCGCAGGACTTACTCTTGGCCTGAGGCTGGGGAGGCGTAGTGCTGCTTGGGGGCATGGGGGGCAGTGGTGGGGTGCTCAAAAAAGGTGATTTAGGACTCGGCTGGAA------AGGATTCAACAGGCGATGCATAGGGTTGGTGCGACTGGGCGAGACTGGCGGAGGGG---TGGAACTGTTTCCTGCCAGCTCTCGAAGCCTTCTGGAGAAATCCATCGCTGGGGACTCAATTGCCATGGGGTTTAAACGCATAACTCTGTCAAAGGCACTGGGATGCTGGGCAACTAACCCCATTTCTTCGGCACTAAGGCG---------ATGTGGATCCAGATGATGACGAGGTGGTGGGCTGAATAGTGGAGGCGTGTTTGGGAGCCGACCCT s fr1.chrUn 275910993 637 + 349519338 AAGTCACCACCGTGGTTCTTCATGC------------GCTCACTTGTGCCTGGCTCCGGGGAACTTGTAGTTGATAGTCCATCATCCGAACGCCCAGTCAGTGAACCAGGCTTGTGCATGTGGGTCTTCATGTGGCGTTTCAGCTTACTCGCCTGAGAACATGCATGGTCACACAGCTGGCACTTGTAGGGTTTCTCTCCGGTGTGGCTTCGGCGATGCACAACCAAGTTGCTTTGGAACTTAAATGTCTTACCACAGAACTCACAGGATTTGACTTTGTTCTGCATCTGTGGAGGGCTAGTGCTGTTTGCGGGAGCCGGTGGTAAGGGAGGAGTGCACACAAAGGGTGACTTTGGCCCAATTTGAAAGGTGTTGGGGTTGAGTAATCGGTGAATATGGTTGGCCCTGCCTGGCGACAGCGGCGGTGTTGTACTGTTGCTATTACCCGCCAATTCACGTAACCTCCTGGAGAAGTCCATGGAGTGGGACTCCATGGACACGGGCGCGAGACGCATCACCTTTTCAAAGGCACTTGGGTGCTGTGAGATGAGACCCATTTCTTCTGTGCTAAGGCATTCTAGCCTATGGGAGTCCAGGTGGTGGCGGGCAGGGGGGCTAACAAATGCAGGCATGTTGGGCAGTCGGTTCT s danRer1.chrUn 103631027 646 + 367113659 AAATCACCATCCCGATTTTTTATACCCTCCCCAGTGACGTCACTAGTGCCTGGCTCAGGTGAGCTGGTGGTGGACAGGCCATCGTCAGAGCGCCCTGTCATGGAACCAGATTTGTGCATGTGGGTCTTCATGTGGCGTTTTAATTTGCTCGCTTGAGAACAAGCGTGGTCACACAATTGGCACTTGTAAGGTTTCTCGCCTGTGTGGCTTCGCCGATGAACAACCAGATTACTCTGAAACTTGAAGGTCTTGCCACAGAACTCGCAAGATTTCGACTTGCCCTGTGTCTGTGGCGGGGTGGTGCTGTTAGGGGGCATGGGAGGCAGTGGAGGGGTGCTCAGAAAGGGTGATTTCGGGCTGGGCTGAAAGGGGTTGGGATTGAGAAGGCGATGCATAGGGTTAGCACGGCTCGGTGACAATGGTGGAGTGG---AATTGTTGTTTCCAGCAAGCTCTCTCAATCGGCGGGAGAAATCCATGGACTGGGACTCCATGGCCATGGGTGTCATGCGCATCACTCTTTCGAAGGCACTGGGATGCTGGGAGATTAAACCCATTTCCTCTGCGCTAAGGCGTTCCAGGCGATGGGGATCTAAATGATGGCGTGGAGGGGGGCTGACAAAGGGAGGCGTATTGGGGATACGGTTTT a score=309091.0 s hg17.chr14 98712006 203 + 106368585 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG s panTro1.chr15 99209872 203 + 106954593 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG s mm5.chr12 102665971 203 + 115071072 CACCGAAGCCA---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCCAGGAAATTCATGAGTGGGGACTGCGCCACGGTCTCCGGCCCGAGCGGTGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCCGGCCCAGGCTCCAGGTAGATTCGGAAGCCATGTGTGTTCTGTGCG s rn3.chr6 132301348 203 + 147642806 CTCCGAAGCCG---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCGAGGAAATTCATGAGTGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCGGGCCCGGGCTCCAGGTAGATGCGGAAGCCATGCGTGTTCTGCGCA s canFam1.chr8 70560986 203 + 77374719 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGGGCCACGGCCTCGGGTCCCAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG s galGal2.chr5 44595582 203 + 56310377 CACCAAAGCCA---G-GATGTTCACGCAAA--ATGGGTCCTGTCATCCGCAGAAGATTAAAAGGGTTGTTG---TCTCCAAGGAAATTCATCAGCGGGGACTGTGCAACAGTCTCTGGTCCCAGAGGAGGAGGGATGGTGATGCGTGGAGTAAGGGAACTGTTGGAAGGGCTTGTTTCCAGGTAGATGCGGAATCCATGTGTGTTCTGGGCA s fr1.chrUn 275911630 206 + 349519338 CGATAAAAGCA---GAGGCGGGCTCTCGAGTCACTGGGCCTGTCATTCTTAAGAGCTGGAAAGGGTTGTTT---TCCCCCAGAAAGTTGATGAGGGGGGGATGAGGGATGCAGTCATTGCCCATGGGTGGAGGCATGGTGATGCGTGGAGTTAGGGCTGCGCTCGAGGGATCTGACTCCAGGTATATGCGAATGCCATGCGTGTTTTGAGCA s danRer1.chr5 4283993 209 + 40038624 CGATGTAGCCATGCG-GCGGTTCTCGTAGC--AGTGGGGCACCCATACGCAACAGCTGGAAAGGGTTGCTGCCATCACCCAGAAAGCTGGCAAGTGGGGAACGAGGCAAGGCATCAGCCCCCAGTGGTGGAGGAAGAGCCATGCGAGGGGTAAGAGAGCAGCTAGTAGGGTGGGTGTCCAGGTAGATGCGTATCCCATGGGTGTTCTGTGCA a score=170742.0 s hg17.chr14 98712209 76 + 106368585 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC s panTro1.chr15 99210075 76 + 106954593 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC s mm5.chr12 102666174 76 + 115071072 TGCTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC s rn3.chr6 132301551 76 + 147642806 TGTTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTACATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC s canFam1.chr8 70561189 76 + 77374719 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC s galGal2.chr5 44595785 76 + 56310377 TGCTGAAGCAAGAACCAAGCGCTATTAAAAGGCTGCTTGCATGTTGTGCAAATATAGCTTGAAGGCTCATCTTT---AC s fr1.chrUn 275911836 79 + 349519338 TGCTGTAGCAGGAACCAGGCATTGGAAAACATCTGCTTACACGTGGTGCAGATATAACTGGAGGGCTCATCCCTCTGAC s danRer1.chrUn 103631683 76 + 367113659 TGCTGCAGAAGGAACCAGGCGTTGTAAAAGGGTTGTTTGCACGTTGTGCATATGTAACTTGAGGGTTCATCTCT---AC a score=412979.0 s hg17.chr15 41486872 188 + 100338915 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCTAAAGCAATAT s panTro1.chr16 41478602 188 + 101535987 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCCAAAGCAATAT s mm5.chr2 120979995 188 + 181686250 TTAGTGAGAAACATAATCATGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGTTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT s rn3.chr3 107897216 188 + 170969371 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTGGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGCTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT s canFam1.chr30 13173383 188 + 43165425 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGATCCGTCACCACCACGTCAAATACCCCTAAAGCAATAT s galGal2.chr10 80159 188 - 20909726 TTAACGAGGGACATAGTCATGTTTGTATTTTGGATGCTTGTTGTAGCCTACTCTCTCTCCAGCAATAAGGCTCTGGATCACCCACTCTTGTGAGACAACAGGCAACCTTAATGCTTCTGCGCACTTCAAGACAACAGCTGGGCAGGAAAGATCAGTCACCACCACATCATAAACACCCAATGCAATAT s fr1.chrUn 325491827 188 - 349519338 GGATTATGACGCGTAGTTGTGGCGATACCGAGGCAGGCTATGGAAACCCAGGCACTCCCCACAGATCACACTCTGGATGAGCCACTCGGGAGACACCAGCGGCACTTCCTGTGATGCCATGTTCTTCTCCACTAGTGGGGAGCAGGTGTGGTCCGTCACCACAACGTCAAACTTGCCGGCAGGAATGT s danRer1.chrUn 117181337 182 - 367113659 TTACGTAGATGT---GTTGTGGCAGAATTCAGAATTGCTGTCGAAGTTGAGGCACTTTCCACAGATCAAGCTCTGAATCAGCCACTCCAGAGAGACAACAGGCATGTTTGAGGCC---ACACGCTTCACTTCCTTTGATGTACATGCTGATGATGTCACTGCCACATCAAACTTCACATCTGGAATGT a score=145507.0 s hg17.chr15 41673708 149 + 100338915 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG s panTro1.chr16_random 12462177 149 + 32210112 ATGGGTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCATGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCGGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG s mm5.chr2 121140425 152 + 181686250 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACTGTATCCCCCGAG s rn3.chr3 108059196 152 + 170969371 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCCGGACTCAAGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCGCCGCCGGGATTCTGCTCCGTCCGGAATCTGTACGAGCGGCCACCGGTGAACGGAGGAGACTGTATCCCCCGAG s canFam1.chr30 13349240 149 + 43165425 ATGGCTGGTCCCTTCTCTCGTCTGCTGTCCGCGCGCCCGGGGCTCAGGCTCCTAGCTTTGGCTGGAGCTGGGTCTCTAGCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTAAGAGCCGCC---AGTGAACGACGGAGGCTGTATCCCCCAAG s galGal2.chrZ 28834466 152 + 33651169 ATGGCTGGCACCTTTGGTCGTCTCCTGGCTGGCCGTGTGACTGCTGCACTTTTTGCAGCAGCAGGCACAGGGGTACTCACCACTGGGTACCTCCTCAACCAGCAAAATGTGAAAGCTACTGTGCATGAGAAGCGGAAGCTCTTCCCTCCCAG s fr1.chrUn 97204237 143 - 349519338 ATGGCGAGTAGCTTCTCCAGGGTTCTGATCTCCAG---AAACATCCGGATCCTGTCGCTGTTGGG---GGGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGAC---GGCCCCACACGGAGGAGGTACCCCGCCAG s danRer1.chr4 497203 149 - 30025136 ATGGCTGGTTCAATTGGCAAGATGATGTCGAGCCGCACCACTGGCCTGCTCATGGCAAGCCTCGGAGCTGGTGCTTTGGCGACCGGATATATGATGAGTGACAGTGCTGCAATCTCTGCG---GACGAGAAGAGGAAACTCTACCCTCCCAG a score=250959.0 s hg17.chr15 41679161 89 + 100338915 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC s panTro1.chr16 41682794 89 + 101535987 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC s mm5.chr2 121145551 89 + 181686250 TCATAATAGGTGGCCAAAAATGCTGACGGGCAATGCCAGGGCCCAGGAGGCTTGGAACCAGTCGTAGAGACCCCAGGCTGAGTTTCGAC s rn3.chr3 108064239 89 + 170969371 TTATAATAGGTGGCCAAAAAAGCTGATGGTTAGTGTCAGAGCCCAGGAAGCATGGAACCAGTCACAGAGACCCCAGGCTGAGCTTCGAC s canFam1.chr30 13354361 89 + 43165425 TCATATCAGGTTGCCAAGGAAGCAGATGGTCAATGCCATGGCCCAGGAGGGTTGTGACCAGTCCTGAAGGCCCCAGGCTGTGCTTCGAC a score=50892.0 s hg17.chr15 41826029 40 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC s panTro1.chr16 41735415 40 + 101535987 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC s mm5.chr2 121195614 40 + 181686250 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCGGGCGTGGCGC s rn3.chr3 108117268 40 + 170969371 ATGCGCTTCAGCTGCCTTGCGCTGCTCCCGGGCGTGGCGT s canFam1.chr30 13397631 40 + 43165425 ATGCGCCCCCGCTGCCGAGCGCTGCTCCCGGGCGTGGCGC a score=11434.0 s hg17.chr15 41826069 20 + 100338915 TGCTTCTTGCCGCG---------------GCCCGC s panTro1.chr16 41735455 20 + 101535987 TGCTTCTTGCCGCG---------------GCCCGC s mm5.chr2 121195654 20 + 181686250 TGCTGCTCGCCTCG---------------GCCCGT s rn3.chr3 108117308 35 + 170969371 TGCTGCTCGCCTCGGCCCTCCTCGCCTCCGCCCTC s canFam1.chr30 13397671 20 + 43165425 TGCTTTTCGCCGCG---------------GCCGGT s fr1.chrUn 97210657 23 - 349519338 TGCTTTTAGCAGCG------------CTCACCGGC a score=118454.0 s hg17.chr15 41826089 107 + 100338915 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG s panTro1.chr16 41735475 107 + 101535987 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG s mm5.chr2 121195674 107 + 181686250 CTCGC---CGCCGCCTCCGATGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCGGCGGGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG s rn3.chr3 108117343 107 + 170969371 CTCGC---CTCCGCCTCAGACGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCAGCTGGGCTCATGCTAGTCGAGTTCTTCGCCCCATG s canFam1.chr30 13397691 107 + 43165425 CTCGC---CTCTGCCTCCGACGTGCTGGAACTCACTGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCTCCCTG s fr1.chrUn 97210680 101 - 349519338 TTCACGCAGGCCGCCAGTGATGTGCTGGAGTTCACGGATAACGATTTCGAAAGTAAAATCGGAGACC---------ATGAAATTATTCTTGTGGAGTTTTTCGCACCCTG s danRer1.chr17 15314657 98 + 35757233 CTCGT---GGAGGGCAGCGATGTGCTGGAGCTCGGAGATTCTGACTTTGA---------CCGGAGCGCAGGCATGCATGACACTCTGCTAGTGGAGTTCTTCGCACCTTG a score=88002.0 s hg17.chr16 142908 95 + 88827254 ATG----TCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG s panTro1.chr18 150233 95 + 83875239 ATG----TCTCTGACCAAGACTGAGGGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG s mm5.chr11 32172234 95 + 121648857 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAG-AGAG s rn3.chr10 95139962 95 - 110733352 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGACAAAATGGCGCCTCATGCAGAGCCCATTGGCACTGAGACTCTGG-AGAG s canFam1.chr6 37152261 96 - 79106041 ATG----TCTCTGACCAAGGCCGAGAGGACCATCATCCTGTCCATGTGGGGCAAGATCTCCACCCAGGCGGATGCTATTGGCACCGAGGCCCTGGAAGAG s galGal2.chr14 13958597 95 + 20603938 ATG----GCACTGACCCAAGCTGAGAAGGCTGCCGTGACCACCATCTGGGCAAAGGTGGCTACCCAGATTGAGTCCATTGGGCTGGAATCACTGG-AGAG s fr1.chrUn 269729641 95 + 349519338 ATG----AGTCTGAGCAGGACTGACAAGGAGGCCGTGAAGGCCATTTGGGCCAAAATGTCCAAGAGCATTGATGTCATCGGGGCCGAGGCGTTTG-GCAG s danRer1.chrFinished 33475840 95 - 40167097 ATGAGTCTCTCTGCCAAAGAC----AAAGCTGCCGTCAAAACCCTGTGGGCCAAGATCGCTGGAAAGGCTGACGACATCGGACACGATGCTCTCT-CCAG a score=39370.0 s hg17.chr16 179963 35 + 88827254 TTACTTGTATTTCGCACTTCGGTCCCGGGAAGCCC- s panTro1.chr18 195782 35 + 83875239 TTACTTGTATTTCGCACTCCGGTCCCGGGAAGCCC- s mm5.chr17 68693958 35 - 93559791 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC- s rn3.chr10 95183773 35 - 110733352 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC- s canFam1.chr6 37185997 35 - 79106041 TTACTTGTATTTCGCACTCCGGTCCCTGGAAGCCC- s fr1.chrUn 145482403 32 + 349519338 TTACTTGTGTCTGGAGCCGTGCTC----GTGGCTGT a score=142911.0 s hg17.chr16 179998 137 + 88827254 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC s panTro1.chr18 195817 137 + 83875239 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC s mm5.chr17 68693993 137 - 93559791 GGCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGGCGCCTGTATCTATCTCGGGATCTGGAACGGGAAAACTTCCGCCGC---TCTCTGGAGGTAGACCTAGACCGCCTCCGTCGACGATCCCGGGAGCGTGAC s rn3.chr10 95183808 137 - 110733352 GTCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGTCGCCGGTATCTATCTCGGGACCTGGAACGGGAAAACTTCCGCCGC---TCTCGGGAGGTAGACCTAGACCGCCTCCTTCGACGATCCCGGGAACGTGAC s canFam1.chr6 37186032 137 - 79106041 GGCGGTGGCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGGTGTCTGTCTCGGGACCGGGACCGGGATGACTTTCGTCGC---TCCCTGGAGGTAGATCTGGACCTCCTCCGACGCCGGTCCCGGGAGCGTGAC s galGal2.chr1 142364883 137 - 188239860 GGCTGCGACTCCGGCTGCGGCTGTTGGAGCGAGACCTGTGGCGATGGCGTTTCTCACGGGATTTAGAGCGAGTTCTTCTTTTCCGT---TCCCTGGAGGCTGAGCGAGAGCGATGTCTGCGACGATCTCGGGACCTAGAT s fr1.chrUn 145482435 134 + 349519338 GACGGTGTCCTCGGTTGCGGGAGCCCGATCTGCTGCGATGCCTCCTCCTCCTGTCCCTGGAGCGCGAACGGGAA------CGGCGCTTGTCTCGAGACGTCGAACGCGAGCGTCTCCTCCTGCGGTCACGAGAGCGGGAC a score=23245.0 s hg17.chr16 244413 4 + 88827254 ATGT s panTro1.chr18 262355 4 + 83875239 ATGT s mm5.chr17 68753542 4 - 93559791 ATGA s rn3.chr10 95244723 4 - 110733352 ATGA s canFam1.chr6 37249961 4 - 79106041 ACGA a score=198450.0 s hg17.chr16 244417 264 + 88827254 TGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG s panTro1.chr18 262359 264 + 83875239 TGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG s mm5.chr17 68753546 264 - 93559791 TGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACC-CAGGAAACCTACCAAGAAACGAAGATAA----CTTGAAGAGCAAGCCTGTGCCTTCCCGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCCCTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG s rn3.chr10 95244727 264 - 110733352 TGGATGACAAGGATCTAGAAGCTGAAATACATCCCTTGAAGAATGAGGACAAAAAGTCACAGGAAAACC-TAGGAAACCTACCAAAGACCGAGGACAA----CTTGAAGAACAAGCCTGTGCCTTCTCGCTTGTCCCGGTGTCGCACGGTGGCATTTTTCCTTTCCCTGTTCATCTGTCTCTTTGTGGTGTTTGTCCTCTCTTTCATCATCCCATGCCCAGACCGACCGTCCTCTGAGGACAAGTGGAGGCTGGACTACGACTATGCAG s canFam1.chr6 37249965 264 - 79106041 TGGACAGCAAGGACCTAGAAGCCGAAATCCACCCCCTGAGGAACGAAGACAAGAGGCTGCCCGAGACCC-CGGGAAACCCGGGCCACGCAGACGAGAA----GCTGAAAAGCTCGCCCCGGCAGCCCCGCCTCTCCCGGTGCCGCACCGTTGTGTTTTTTCTTTCACTGTTTGTCTGCCTGTTCGTAGTGTTCGTGGTTTCGTTCATCATCCCGTGCCCGGAACGGCCCGTGTCGCAGGGGATGTGGCGGATAGACTACAGCGCGGCAG s galGal2.chr14 6505218 264 - 20603938 TGGATAACAAAGACTCAGAAGCTGAGATCCACCCCCTGAAGACAGAGGACGTGAAAGCTCAAGAGAACCATGAGAACTCTGTTGA-----GAGGAGAATCATCATCAAGCAGTCGTCGCAGCTGTCTCGGCTGTCCCGCTGGCGCACCGCCGCCTTCTTCATCTCATTATTTCTGTGTCTCATCATCGTGTTTGCCTTCTCCTTTATCATTCCTTGCCCTGAGAGGCCTGTCTCAGAGAGAACGTGGCTCCGAAACTATGACAATGCAG a score=3883.0 s hg17.chr16 259268 28 + 88827254 C-TAGGCCACCCCAT----CTCCACCCCCAGGG s mm5.chr17 68763356 29 - 93559791 CCTACTACTCCCCAT----CGGCACCTTCAGGG s rn3.chr10 95254895 29 - 110733352 CTTAGTCCTCCTCAT----TGCCACCTGCAGGG s canFam1.chr6 37261496 28 - 79106041 -CTAGGTGCCCCTGT----CCCCGCACGCAGGG s fr1.chrUn 32270640 32 + 349519338 -CTTGGCCTGTCCGTCCTGCTCCGCCATCCGGG s danRer1.chrNA 221970878 28 + 390413307 CCCTGGGGCCTCTAT-----TGCAAGTCCAGGG a score=-1898.0 s hg17.chr16 259296 9 + 88827254 CCACAAGCC s mm5.chr17 68763385 9 - 93559791 GAACTGGTT s rn3.chr10 95254924 9 - 110733352 GAGCTGGTA s canFam1.chr6 37261524 9 - 79106041 TCACTTGCA s fr1.chrUn 32270672 9 + 349519338 CCGATGCCT s danRer1.chr1 5581271 9 + 40858791 CCATCATCC a score=2916.0 s hg17.chr16 259305 2 + 88827254 GC s mm5.chr17 68763394 2 - 93559791 GC s rn3.chr10 95254933 2 - 110733352 GC s canFam1.chr6 37261533 2 - 79106041 GC s galGal2.chr14 6519763 2 - 20603938 GC s fr1.chrUn 32270681 2 + 349519338 GC s danRer1.chr1 5581280 2 + 40858791 TC a score=1053.0 s hg17.chr16 259307 19 + 88827254 TG---TGGGCTCCACAGGGGTG s mm5.chr17 68763396 19 - 93559791 TG---CAGGCTCCCTGGGGGTA s rn3.chr10 95254935 19 - 110733352 TG---CAGGCTCCCCAGAGGTC s canFam1.chr6 37261535 22 - 79106041 AGTCACAGGCTCTGCAGATGTG s galGal2.chr14 6519765 19 - 20603938 CT---CGGTGTCACCGGCGGGC s danRer1.chr1 5581282 13 + 40858791 TG---TGG------TATGGGTG a score=-178.0 s hg17.chr16 259307 28 + 88827254 TGTGGGCTCCACAGGGGTGGGAAGGAGT s danRer1.chr1 5581282 19 + 40858791 TGTGG------TATGGGTGACGAGA--- a score=499.0 s hg17.chr16 259326 3 + 88827254 GGA s panTro1.chr18 279072 3 + 83875239 GGG s mm5.chr17 68763415 3 - 93559791 GAC s rn3.chr10 95254954 3 - 110733352 GAC s canFam1.chr6 37261563 3 - 79106041 GGA s galGal2.chr14 6519784 3 - 20603938 AGG a score=4058.0 s hg17.chr16 259329 6 + 88827254 AGGAGT s panTro1.chr18 279075 6 + 83875239 AGGAGT s mm5.chr17 68763418 6 - 93559791 TGGAGA s rn3.chr10 95254957 6 - 110733352 TGGAGA s canFam1.chr6 37261566 6 - 79106041 AGGAGC s galGal2.chr14 6519787 6 - 20603938 AGCAGG s danRer1.chr1 5581295 6 + 40858791 ACGAGA a score=70372.0 s hg17.chr16 259335 48 + 88827254 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAAACGGGAACACG s panTro1.chr18 279081 48 + 83875239 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAATTGGGAACACG s mm5.chr17 68763424 48 - 93559791 GCAGGGCTGGGGCTTGAGTGCAGAGGCTTCCGCAAGAATGGAAATGGC s rn3.chr10 95254963 48 - 110733352 GCAGGGCTGGGACTTGAGTGCAGAGGCTTCCGCAAGAATGGGAATGGC s canFam1.chr6 37261572 48 - 79106041 GTGGGGCTGGGGCTCGGGTGTGGCGGCTTCCGCAGGAACGGAAAGGCC s galGal2.chr14 6519793 48 - 20603938 GCCGGGCTGGGGCTGGAGTGTCGCTGCTTGCGCATGAAGGGGAACACC s fr1.chrUn 32270683 48 + 349519338 GCGGGGGAGGGGCTGGCGTGCCGCTGGCGTCTCATGAAGGGGAAGACG s danRer1.chr1 5581301 48 + 40858791 GCAGGCGAGGGGCTGGAGTGGCGCTGCCGACGCATGAACGGGAACACA a score=5348.0 s hg17.chr18 23786114 2 + 76117153 TC s panTro1.chr17 19719396 2 + 73346066 TC s mm5.chr18 16960413 2 + 91083707 TC s rn3.chr18 8050213 2 + 87338544 TC s canFam1.chr7 19431300 2 - 83037113 TC s galGal2.chr2 103976638 2 + 147590765 TC s fr1.chrUn 291830820 2 - 349519338 TC s danRer1.chrNA 203940100 2 - 390413307 TC a score=389078.0 s hg17.chr18 23786116 205 + 76117153 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTGGGGTCATTGTCAGCCGCTTTAAGGCC s panTro1.chr17 19719398 205 + 73346066 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTCGGGTCATTGTCAGCCGCTTTAAGGCC s mm5.chr18 16960415 205 + 91083707 AGTCGTCA---CCACCGCCGTACATGTCCGCCAGTTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCACCGCTACTGGAGGAGTTGAGGGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCGTAGTCAAAGACTAAGAGGGAGTCATACGGTGGCGCCGTGGGGTCGTTGTCAGCAGCTTTAAGGCC s rn3.chr18 8050215 205 + 87338544 AGTCATCA---CCACCACCATACATGTCGGCCAGCTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCGCCGCTGCTGGAGGAGTTGAGAGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCATAGTCGAAGACTAAAAGGGAGTCATATGGTGGCGCCGTGGGGTCATTGTCAGCAGCTTTAAGGCC s canFam1.chr7 19431302 205 - 83037113 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAGTCATAGTCCTGCTCGCCACCACTACTTGAAGAATTAAGGGAGCTCAAAGACCCAGCGGTAGAGCCACTGCCTTCGTAGTCAAAGACTAAGAGGGAGTCATATGGTGGAGCTGTGGGATCATTGTCAGCAGCTTTAAGGCC s galGal2.chr2 103976640 205 + 147590765 AGTCATCA---CCTCCACCGTACATGTCAGCAAGTTTCTTGAAACGTGGGCCCCAGTCATTTAGGTAGTCATAGTCTTGCTCACCACCGCTACTTGAGGAATTAAGAGAGCTCAAGGATCCAGCAGTGGAGCCGCTTCCTTCATAGTCAAAGACTAAGAGGGAATCGTATGGCGGGGCTGTAGGGTCGTTGTCGGCTGCTTTAAGTCC s fr1.chrUn 291830822 205 - 349519338 AGTCATCGTCCCCTCCACCGTACAGGTCGGCCAGCTTCTTGAAGCGGGGGCCCCAGTCGTTGAGGTAGTCGTAGTCCTGGTCGCCCGAGCTGAT---GGAGTTGAGCGAGCTGACGGAGCCGGCTGTCGAGCCGGTGCCCTCGTAGTCGAACACCAGCAGGGAGTCGTAGGGAGGGGCCGTGGGGTCGTTATCCGCTGCTCTCAGACC s danRer1.chrUn 257546281 205 - 367113659 AGTCGTCG---TTACCTCCGTACATGTCGGCGAGTTTGCGGAAGCGAGGGCCCCAATCGTTGAGGTAGTCATAGTCCTGGTCTCCTCCGCTGCTGGACGAGTGAAGGGAGCTTAGTGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCAAACACCAGCAGGGAGTCATACGGAGGGGCCGTGGGATCGGTGTCGGCTGCCTTGAGGCC a score=581809.0 s hg17.chr18 59406881 165 + 76117153 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGGTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG s panTro1.chr17 56243482 165 + 73346066 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGCTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG s mm5.chr1 106957557 165 + 195203927 ATGGACTCACTAGGCACAGCAGCCACACAGTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAATGATGGCAACGTCTTCTTTTCCCCTGTGGGCATCTCAACAGCCATTGGCATGATCATCCTGGGGACCCGAGGAGCCACTGCTTCTGAGTTACAGAAG s rn3.chr13 13176896 165 + 111348958 ATGGACTCACTAAGCACAGCAACCACACATTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAGTGACGGCAATGTCTTCTTTTCTCCTTTGGGCATCTCAACAGCCATTGGCATGATCCTCTTGGGGACCCAAGGAGCCACTGCCTCTGAGTTACAGAAG s canFam1.chr1 108508362 165 - 124897793 ATGGATTCACTTGGTGCAGCATACACTCACTTTGGGTTTAATCTCTTCCAAAAGCTGAATAAAATAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATTTCTGCTGCCATTGGCATGCTCATCCCAGGGGCCCGAGAAGCTACCGCCATGCAGTTGCAGAGG a score=1700.0 s hg17.chr18 59455932 2 + 76117153 CT s panTro1.chr17 56296086 2 + 73346066 CT s mm5.chr1 106995539 2 + 195203927 TT s rn3.chr13 13306377 2 + 111348958 TT s canFam1.chr1 108539809 2 - 124897793 CT s galGal2.chr2 67392007 2 + 147590765 TA s fr1.chrUn 39424675 2 - 349519338 CT s danRer1.chr20 11152772 2 + 31913010 TT a score=2707.0 s hg17.chr18 59455934 3 + 76117153 ATG s panTro1.chr17 56296088 3 + 73346066 ACG s mm5.chr1 106995541 3 + 195203927 AAG s rn3.chr13 13306379 3 + 111348958 AAG s canFam1.chr1 108539811 3 - 124897793 AAG s galGal2.chr2 67392009 3 + 147590765 ATG s fr1.chrUn 39424677 3 - 349519338 CAG s danRer1.chr20 11135889 3 + 31913010 ATG a score=316154.0 s hg17.chr18 59455937 400 + 76117153 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAACAGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCACTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACTGAGAGACCGTGGCTCCAGGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACACATGTCT---CTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG s panTro1.chr17 56298740 400 + 73346066 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAATGGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCGCTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACCGAGAGACCGCGGCTCCCAGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACATGTGTCT---GTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG s mm5.chr1 106995544 391 + 195203927 GGGAAGAGATTGTGCCAAAGAAGAGGATGCT-GTTGGTCTTACTGTGCTTGACCAAT---------GGATGATCACAATAGAAATCTT--CTGTAATCTGTAAAGATAAAT---------TATGGGATT-----------TTATCCCCGTGGTAGCAGCAGCTTCTGTTCCCTCTTCATTTACCTCCACAAAGGACTTGTGTAAAACTTTAGACACCACAAGACCTTGAGTGCTGTTCATGCCA-------------------------------------------------------------------------------------GAGAAGTCAGCCTTCTGTGGATCAAAGGCGCCAACCATCCCCATGTGTTTCAATGGAACTGAGAGGTCATACTTCTC---TTCCACTTTGAACCGAGGCAAAGATAAATACAACTCGGTCA---TATGCATATTTTCTGCTCTTGTCCATTCTAGTAACTTTTCAGTAGAGAGTTGTTCTTCAAG s rn3.chr13 13306382 400 + 111348958 GAGAAGACATTCTGCCAAAGAAGAGGATGCT-GTTGGTAGCATTGTGCTTGATGAGGAATAAGAAAGGGTGATCACAATTGAAGTCTT--CGGTTATCTGTGCTGAT-GTT---------AAACTGACT----------TCTACCCCCGTGGCAGCAGCAGCTTCTGTCCCCTCTTCATTTACCTCCACAAAGGACTTGTGTAAAACTTTAGACACCATTAGACCTTGAGTGCTGCTCATGCCT-------------------------------------------------------------------------------------GAGAAGTCAGCCTTCTTTGAGTCAAAGGCGTCCACCATCCCCATGTGCTGCAACGGACCTGGGAGGTCATACTTCTC---TTCCACTTTGAACCGTGGCAAAGACAAATACAAGTCGATCA---TGTTCATGTTCTCTGCTCTTGTCCACTCTAGTAACTTGTCAGCAGTGAGCTGTTCTTCAAG s canFam1.chr1 108539814 397 - 124897793 GGGAAGAGACTCTGCCCAAGAAGAGGATGCT-GTTGGTCTTATTGTGCTTGATGAAGAACAGGAAAGGGTGATCGCAATGAAA-----------AGGATAGATTGGT-GCT---------GATTTGGCA----ATAACTTCTACGTCTGTGGAGGCTGCAGCCTCCGTGCCCTCTTCGGTGACCTCCACAAAGGACTTGTGCCTGACTTTAGACACCACAAGATCCTGCCTCCCTGTCATGCCT-------------------------------------------------------------------------------------GAGAAGTTGGCCCTCTTTGTGTTGAAGGCATCCACCATTCCCAGGGCTTTCAGCGTGGCCTTGAGCTCATAACTCTC---TTCTACTTTGAACCGGGGTAAGTATAAATCCACCTGCCCAT---TGCTCATATTCTGTGAGCTCGTCCACTCTATTAGGTTCTCAGCAGTGAGTTGATCTTCAAG s galGal2.chr2 67392038 400 + 147590765 GAGAGCAATATCTGCCACAGAACAAAATACT-GGAAGTTTTGTTGTGCCGGATGAAGAAGAGGAAGGGATGATCGGCAGTGAA------------GTCGGGAACGAT-CAT---------AGCACAACGGAGCACCATCACTCCTGCTGTGGCAGCTGCTGCTTCAGTGCCTTCTTCGTTGACCTCCACGAAGGACTTGTGAACCACTTCAGAGAGCACAAGCTCGTTACCAGAGGAGATTCCT-------------------------------------------------------------------------------------GAGAAGTTCGCCATCCGTAAGTCAAACGCATCACGCATTCCCATGTTGCTCAGGATGGGTTTCAGATCATAATTTTC---TTCCAGTTTAAATCTGGGTAAAGACAGCCTCACTTCTGTAC---TGTCCATCATTTCAGGATTGATCCAATCCATCAGCTTCTCGTATGTAAGTTCTCTTTCCAG s fr1.chrUn 39424680 486 - 349519338 GAGAGCAATATCTACCAGCAAACAGAATGTTCCTTGGAGGGGTTGTGTCTGATGAAGAAGAGGAAAGGATGGTCTGCATAGAA-----------ATTCTGAGGGAAT-ACTGCACAGTGCAAAGTGAAG----------ACAACACCAGTGGCAGCAGCAGCCTCAGTTCCCTCCTCATTGACTTCCACAAAAGCTTTGTGAATCACTTCTGACAGGACCAGGTCATTGGCTGGAGACATGCCTGTCAGTCAGAGGGAAAGAGAATATTTCCCATTAATATGATGGCTTGTCTCTTCTGAAAAGGCTCTTTGGAGAAAGTCTCCTACCAGAGAAGTCGCTCGCGGCTACATCAAAGGCATCCACCATGCCCATGCTGACCAGGATGTTCTTCATGTTACATTTCTC---CTCCATCTTGAACCGTGGCAGACCCACCTGGACTTCGACTA---CATTCATCATGTCTGGACGAGTCCACTCCATGAAGTTGTCATAGGTCAGCAGCTTCTCCAG s danRer1.chr20 11135892 406 + 31913010 GGGCTCTGAATCTGCCCAGAAAAAGGATGCT-GTTAGTGGGGTTGTGTCTGATGAAGAACATGAAGGGATGATCGGCTATGAAATCATGAAATGCACCTTGACAAGC-ACT---------GATTGGTAA---------TAACAATGCAGTTGCTGCTGCTGCTTCAGTTCCTTCCTCATTGACCTCAACAAAAGCCTTGTGAATCACTGCTGAAAGAAAGAGACCACCATTACTGCTCATGCCT-------------------------------------------------------------------------------------GTCAGATCAGCCTTGGTTTCCTGGAACACAGAGCTCATGCCCATCTTTTCCAGTGTTTCTGATAG---ACAGCTCTCAATCTCCAACTTGAACTTTGGCAGACGGACAATGATCTTTCTCCATGTGTCCATTTTGCCTCTACTGGTCCAGTCAAGCAGCTTTTGGAGGTTCAACTCGCTCTCCAG a score=170132.0 s hg17.chr18 59600586 168 + 76117153 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAAT------GGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCCCTCTCTCAGATTGATAAG s panTro1.chr17 56457248 168 + 73346066 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAAT------GGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCTCTCTCTCAGATTGATAAG s mm5.chr1 107433492 168 + 195203927 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGCCAAGGAAAT------GGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGACCCTAATCCGTCTGGGTGCTCGAGGTGACTGTGCACGTCAGATTGACAAG s rn3.chr13 13464817 168 + 111348958 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGTCAAGGAAAC------GGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGAGCCTAATCCGTTTGGGTGCTCGAGGTGACTGTGCACGTCAGATTGACAAG s canFam1.chr1 108653495 168 - 124897793 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAATCTGTTCAGAGAGATGGATAACAATCAAGGAAGT------GAAAATGTGTTCTTTTCTTCCCTGAGCATCTTCACTGCCTTGGCCCTGGTCCGTTTGGGCGCACGGGGTGATTGTGTTTCCCAGATTGATAAG s danRer1.chrNA 84211897 168 + 390413307 ATGGAGTCTCTGTCTGCAGCAAACACACAGTTTTCCCTCAACCTGTTCAAGAAGAT------CAGCGGAGGAAACGCATCAGGAAATGTGTTTTATTCTCCTGTCAGCATCTCCTCGGCTCTGGCCATGGTGTCGCTCGGTGCCAAAGGAAACACCGCAGATCAGATGTTTAAG a score=40916.0 s hg17.chr19 59068595 56 + 63811651 ATGCCAGTGACGGTAACCCGCACCAC----------CATCACAACCACCACGACGTCATCTTCGGG s panTro1.chr20 56482145 56 + 61571712 ATGCCAGTGACGGTAACCCGCACCAC----------CATCACAACCACCACGACGTCATCTTCGGG s mm5.chrUn_random 23451477 45 - 102265694 ATGCCGGTAACAGTAACTCGTACAAC----------CATCACG---ACTACAACGTCA-------- s rn3.chr1 203863650 45 - 268121971 ATGCCGGTCACAGTCACCCGTACAAC----------CATCACA---ACTACATCATCA-------- s canFam1.chr1 18886888 56 - 124897793 ATGCCTGTGACGGTGACCCGCACGAC----------CATCACAACCACCACGTCGTCATCCTCAGG s danRer1.chr2 9429255 61 - 32943701 ACGTCAAACCAAAGTACTCCCATTACTCCTGTCTGACATCACAGTCCCTGTAAC-TCTCCTC---- a score=19097.0 s hg17.chr19 59068651 29 + 63811651 CCTGGGGTCCC-CCATGATCGTGGGGTCCC s panTro1.chr20 56482201 29 + 61571712 CCTGGGGTCCC-CCACGATCGTGGGGTCCC s mm5.chrUn_random 23451522 22 - 102265694 -------TCCT-CCACCACTGTGGGGTCCG s rn3.chr1 203863695 22 - 268121971 -------TCCT-CCACCACTGTGGGGTCCG s canFam1.chr1 18886944 29 - 124897793 CCTGGGCTCCC-CAACCATCGTGGGGTCCC s fr1.chrUn 129654883 29 + 349519338 CCTGCGATTTC-CCGCCATGCCGGTGTTCA s danRer1.chr2 9429316 30 - 32943701 TCTGTGATCCCATCATGGCAGTGGTGTTGC a score=0.0 s hg17.chr19 59068680 4 + 63811651 CTCG a score=2300.0 s hg17.chr19 59068680 4 + 63811651 C--TCG s panTro1.chr20 56482230 4 + 61571712 C--TCG s mm5.chrUn_random 23451544 4 - 102265694 C--TCG s rn3.chr1 203863717 4 - 268121971 C--CCG s canFam1.chr1 18886973 4 - 124897793 C--TCG s fr1.chrUn 129654912 6 + 349519338 CGGTCA a score=66381.0 s hg17.chr19 59068684 64 + 63811651 GGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC--TGGTGTCTACCTGCGTGGCCTTC s panTro1.chr20 56482234 64 + 61571712 GGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC--TGGTGTCTACCTGCGTGGCCTTC s mm5.chrUn_random 23451548 64 - 102265694 GGCGCTGACCCAGCCGCTGGGCCTCCTCCGCCTCCTGCAGC--TAATATCCACCTGTGTGGCTTTC s rn3.chr1 203863721 64 - 268121971 GGCGCTGACCCAGCCCCTGGGCCTCCTCCGCCTCCTGCAGC--TAGTATCCACCTGTGTGGCTTTC s canFam1.chr1 18886977 64 - 124897793 GGCGCTGACCCAGCCCCTGGGCCTCCTCCGTCTGCTGCAGC--TGCTGTCCACCTGTGTGGCCTTC s galGal2.chr18 4859021 64 + 8919268 GGCTGTGACATCTCCAGTGGGAATAGTTCGTTTGCTGCAGA--TGATGTTTGGATGCACCACGTTC s fr1.chrUn 129654918 59 + 349519338 TGCTCTCCCAGGTCTTCTGGGT-------GCGTTTAGCAGCTTTGTTGTTCACCTGTGTGGCCTTC s danRer1.chr2 9429346 59 - 32943701 GTTCCTCACCTCTCCTGTGGACCCGAGTGGCTGCCA-------TGGTTTTCGCCTGCGTGGCCTTC a score=20765.0 s hg17.chr19 59068748 35 + 63811651 TCGCTGGTGG-C---TAGCGTGGGCGCCTGGACGGGGTC s panTro1.chr20 56482298 35 + 61571712 TCGCTGGTGG-C---TAGCGTGGACGCCTGGACGGGGTC s mm5.chrUn_random 23451612 35 - 102265694 TCGCTGGTGG-C---CAGTGTGGGTGCCTGGACAGGGCC s rn3.chr1 203863785 35 - 268121971 TCACTGGTGG-C---CAGTGTGGGTGCTTGGACAGGGCC s canFam1.chr1 18887041 35 - 124897793 TCCCTGGTGG-C---CAGTGTGGGTGCTTGGACCGGGGC s galGal2.chr18 4859085 36 + 8919268 AGCCTGGTGGCC---CACCAGGGGGGATTCAGCGCAGCA s fr1.chrUn 129654977 35 + 349519338 AGCTTGGCAG-CGCACGGCGCCAACGTCC--ACGGGGG- a score=827754.0 s hg17.chr19 59068783 773 + 63811651 CATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCC-TGCTATGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTC-----C--------TGTCCCACGGCCGTTCGCGG------GACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTTC---GCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACCGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCGCAGC------------CATGCCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCT--GCCCACCTGGTTTTTGT-CA s panTro1.chr20 56482333 773 + 61571712 CATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCC-TGCTACGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTC-----C--------TGCCCCACGGTCGTTCGCGG------GACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTC---GCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACTGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCGCAGC------------CATGCCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCT--GCCCACCTGGTTTTTGT-CA s mm5.chrUn_random 23451647 785 - 102265694 CATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGACTCCAGGCCCACTTCCCCCTGTCATGGCGAAACTTCCCCATCACCTTTGCC-TGCTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTATGTGCAGTTC-----C--------TAGCTCATGGACGTACCCGG------GACCATGCCATCGCTGCCACCACTTTCTCCTGCGTTGCCTGTTTGGCGTATGCCACTGAAGTGGCCTGGACCCGTGCAAGGCCCGGTGAGATCACTGGCTATATGGCTACCGTGCCAGGGCTGCTCAAAGTTTTTGAGACCTTCGTAGCCTGTATCATCTTT---GCCTTCATCAGTGAGCCGCTCCTGTATAATCAGAAGCCAGCCCTGGAGTGGTGTGTGGCAGTCTATGCCATCTGCTTCATACTAGCAGGGGTGACCATCCTGCTCAACCTGGGGGATTGTACCAACGTGTTGCCCATCCCTTTCCCCACCTTCCTCTCAGGCTTGGCCTTACTCTCTGTTCTCTTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGATATCAGGGCCAACCCCGCCGTTCAATGGATCCAAGCTGCACTCGTAGTATTAGTTATATACAACCCAACACGGTGTGTTTCTGGGACCGACGACTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTACTCC--ACTCGTCTGGTGTTCGT-CA s rn3.chr1 203863820 779 - 268121971 CATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGATTCCAGGCCCGCTTCCCCCTGTCATGGCGAAACTTCCCTATCACCTTCGCC-TGTTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTACGTGCAGTTC-----C--------TACCTCACGGACGTTCCCGG------GACCACGCCATCGCTGCCACCACCTTCTCCTGCGTTGCCTGTTTGGCGTATGCTACTGAAGTGGCCTGGACTCGTGCAAGGCCTGGTGAGATCACTGGCTACATGGCTACCGTGCCAGGGCTGCTCAAAGTGTTCGAGACCTTCGTAGCCTGCATCATCTTT---GCCTTCATCAGTGAGCCGAGCCTGTACCAGCAAAGGCCGGCCCTGGAATGGTGTGTGGCAGTCTATGCCATCTGCTTCATCCTAGCAGCAGTGACCGTCCTACTCAACCTGGGGGATTGTACCAACATGCTGCCCATCCCTTTCCCTACCTTCCTGTCAGGCCTGGCCTTACTGTCTGTGCTCCTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGGTATAACAGCCAACCCCGCCGTTCAATGGATCCAAGCTGCTCTCGTAGT------TATGTACAACCCAATGAAGTGTGTAACTGGGACCGACGGCTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTATTCC--ACCCGTCTGGTGTTCGT-CA s canFam1.chr1 18887076 773 - 124897793 CATGGGCAACTGGTCCATGTTCACATGGTGCTTCTGCTTCGCTGTGACCCTCATCATCCTAATAGTCGAGTTAGGTGGCCTCCAGTCCCGCTTCCCCCTGTCCTGGAGAAACTTCCCCATCACCTACGCC-TGCTACGCTGCCCTCTTCTGCCTGTCGGCCTCCATCATCTACCCCACCACCTACGTTCAGTTC-----C--------TGTCTCATGGCCGCTCCCGG------GACCATGCCATCGCCGCCACTGCCTTCTCCTGCATCGCTTGTGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGTCCCGGAGAGATCACCGGCTACATGGCCACTGTGCCGGGCCTGCTCAAGGTGCTGGAGACCTTTGTGGCCTGCATCATCTTC---GCCTTCATCAGCAACCCCTCCCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGTGTGGCCGTCTACTCCATCTGTTTCATCCTGGCGGCTGTGGCCATCCTACTGAACCTGGGGGACTGCACCAACATGCTGCCCATCTCCTTCCCCAGTTTCCTGTCGGGCCTGGCCCTGCTCTCCGTCCTGCTGTATGCCACGGCTCTGGTTCTCTGGCCGCTCTACCAGTTCAACGAGAAGTATGGTGGCCAGCCCCGTCGGTCGAGGGATGTTAGCTGCGCCGACAGG------------CACACCTACTACGTGTGTACCTGGGACCGCCGCCTGGCTGTGGCCATCCTGACAGCCATCAACCTGCTGGCTTACGTGGCTGACCTGGTGTACTCG--GCCCGCCTGGTTTTTGT-TA s galGal2.chr18 4859121 763 + 8919268 TAC-GGCACTTTCTGCATGTTCGTCTGGACCTTCTGCTTTGCTGTCACTGTCTTTATCATTACCTGCGAGTTCACGCACCTGCACAGCTGTCTGAGCATCTCCTGGGGAAACTTCACAGCTGCGTTCGCCATGCT-CGCCACGCTCATGTCGGTCACAGCGGCGGTGATCTACCCGCTCTACTTCGTGCAGCTCGGCTGC--------TACCCCATCACC-TGCGAGG-TGAGAGACTTCCGCATAGCGGCCAGCGTCTTTGCCGGCCTCGTGTTCGTTGTGTATGGCGCGGAGGTGTTCTTGACCAGAGCCAAACCAGGACAGGTCACCAGCTACATGGCCACTGTCTCTGGGCTCCTGAAGATCGTACAGGCCTTTGTGGCTTGCATCATCTTTGGGGCGCTGGTGAACGA---CAGCCAGTATAGCAAATACGTGGCCACACAGTGGTGCGTGGCCGTCTACAGCTTCTGCTTTATGGTCACGGTGGTGGTGGTCGCCTTCAGTGTCACTGGTAAGACCGCCCAGCTGTGCTTCCCCTTCGAGCGCTCTGTGGTCGTCTACACTTTCGGGGCCGTCCTGCTGTACGTGAGCGCGGCCGTCATCTGGCCGGTGTTCTGCTTTGACAGCAAGTACGGCTCCCCGCAGCGCC---------------------CCAGCGCC------------TGTGCCAAGGGCAGGTGCCCCTGGGACAGCCAGCTGGTGGTGGCCATCTTCACCTACGTCAACCTGCTGCTCTACGTGGTAGACCTGGCGTACTCCCAGCGCATCCGCTTCGTATCCC s fr1.chrUn 129655012 728 + 349519338 CATGGCTGACTGGTGCATCTTCTGCTGGGTGTTCAGCTTCACCTGCACTCTGCTGGTCCTGCTGGTGGAGCAGTTTGGCCTTCAGGCCCGCATCCCAGTCTCCTGGTCCAACTTCCCCATCACCGTGGCC-TGCTACGCCGCCCTCCTCTGCCTGTCTGCTTCCGTCATCTTTCCCCTGTTCTTCCTGAAGGAG-----CAGGGGTGGTGGTACGCCGACGAACGCAG--------CTTCCGCATCACCTCCACGATCTTCTCCTGCCTGGCGGCGGTGGCCTACATCTGCGAGGTGAGCCTGACCAAGGCGAAACCCGGACAGGTGGCGGGATACATGGCCACGGTCCCGGGCCTCCTGAAGGTGTGCCAGACCGTTGTGGCCTGCATCATCTTC---ATCCTGATCAGCAACCCCGTCTCCTACAGCCACCACGCGGCGCTGGAGTGGTGCATGGCCGTTTACTGCATCTGCTTCATCGTCTCCATGGTGGTGGTGATCCTGTGCGTGGGCGAATGCACCGGGTTTCTCCCGGTCCCCTTCTCCCAGTTCCTGTCAGCGTACGGCCTCCTGGCCTTCCTCATGTACTTGTCAGCTGTCATCGTCTGGCCCATTTTCACGTTTGACAAAAAGTA------------CCGGCGTGGAGGCGATAT--------GTCAAAGC-----------------------------------AGATCGGCG--TGGCAGTG------CTCACCGCCATCAACATGCTGCTGTACCTCGCTGACCTGGTCTACACC--GCTCACCTGGTGTTCAT-CA s danRer1.chr2 9429440 764 - 32943701 CACCGGCGACTGGTGCGTGTTCTGCTGGAGCTTCAGTTTCGTGGGAACTCTTCTAATCATCCTAGTGGAGATGTTTGGCCTGCAGACGCGTGCCCCAGTCTCGTGGAAGAACTTTCCCATCACGTTCGCC-TGCTACGCCTCTCTCCTCTGCCTCTCTGCGTCCATCATATTCCCCTTGTACTTCCTGAAGGGC-----T--------T---TGCTGGGCGCACTGAGATGATTAACTGCCGCATCGTGTCCACTGTATTTTCTTGCCTTGCTACTATCGCCTATTTAAGCGAGGTGAGTCTCAGTAAGGCCCGTCCAGGAGAAGTGTCCGGCTACATGGCTACCGCACCAGGGCTGCTAAAAGTGTGCGAAACCTTCATCGCCTGCATCATCTTC---GTCTTCATCAGCGAGCCCGAGTCGTACAAACAGAATGCGGCGACCCAGTGGTGTTTGGCTGTGTACTGCATCTGCTTCATTTTATCGGCAGGCATCATTGTGATGTGTGTTGGCGAATGCACAGGTTGCTTGCCTTTCTCCTTCGCCCGCTTCCTATCCACGTATGCCCTGCTGGCTGTGAGCATGTATCTGTCGGCCACCATCATCTGGCCCATTTATAAGTTCGACAATAAGCACGGAGGCCAGAGCCACCGACCAA------------ACATCTGCGGG------------TCCAGCATTGGACTTTGCCCGTGGGACAAACTGGTCGCCATTACTGTGCTCAGCTCGCTTAACTTCATTCTTTATCTGGCTGATCTCATTTACTCC--GCAAGGCTAGTGTTTGT-TA a score=10623.0 s hg17.chr19 59069556 8 + 63811651 AGGTCTAA s panTro1.chr20 56483106 8 + 61571712 AGGTCTAA s mm5.chrUn_random 23452432 8 - 102265694 AGGTCTGA s rn3.chr1 203864599 8 - 268121971 AGGTCTAA s canFam1.chr1 18887849 8 - 124897793 GGGTTTGA s galGal2.chr18 4859884 8 + 8919268 ACATCTGA s danRer1.chr2 9430204 8 - 32943701 ATGCTTAA a score=64200.0 s hg17.chr19 59236026 120 + 63811651 CTACACTTTCAGTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCCTTGGGGG--TCTGCCGT s panTro1.chr20 56680126 120 + 61571712 CTACACTTTCAGTGCCGCATATTCACGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCCTTGGGGG--TCTGCCGT s canFam1.chr1 18994847 123 - 124897793 CTTCACCTGCCGCACTGCACATTCACAAGATCCTGGGGACTCCTCGGTGGGGCACAGAAGCTGCCTTAGGTGGTGCCTTGGGGTTTAGATCAGCATGGCTCACTCCCTGGGGGGTCTTTCAGT a score=41374.0 s hg17.chr19 59297998 10 + 63811651 ATGGCTGCGA s mm5.chr7_random 31672903 10 + 46185828 ATGGCCGGGA s rn3.chr1 204132123 10 - 268121971 ATGGCTGCTA s canFam1.chr1 19108689 10 - 124897793 ATGGCCGGGA a score=139739.0 s hg17.chr19 59302168 120 + 63811651 TCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT s panTro1.chr20 56743920 120 + 61571712 TCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT s mm5.chr7_random 31675860 120 + 46185828 TTAGTCAAAGGGTGGGCTGGCCAGGGTAGGGTAGGGTAGCAATTTGTCTGGCTCTCGGGAAACCCAACTTGAATCCAAGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT s rn3.chr1 204134929 120 - 268121971 TTAGTCAAAGGGTGGGCTAGCTAGGGTAGGGTAGGGTAGCAATTTGTCTGGCCCTCGGGAAACCCAACTTGAATCCAAGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCGACCTTAAT s canFam1.chr1 19111006 120 - 124897793 TCAGTCAAATGGGGGACTGGCTAGGGTGGGGTAGGGCAGCAGTTTGTCTGGCCCCCGAGAAACCCAACTGGAGTCCAGGGCCTCATCTGCTTCGAAGCCAAAGTCTTCCTCGACCTTAAT a score=46787.0 s hg17.chr2 118288583 7 + 243018229 ATGTCAC s panTro1.chr13 4310009 7 + 134309081 ATGTCTC s mm5.chr1 73854532 7 - 195203927 ATGTCGC s rn3.chr13 77744300 7 - 111348958 ATGTCGC s canFam1.chr19 21837737 7 - 56914383 ATGTCCC a score=62416.0 s hg17.chr2 118288590 78 + 243018229 ACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTTTCAGG s panTro1.chr13 4310016 78 + 134309081 ACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTTGCAGG s mm5.chr1 73854539 78 - 195203927 AGTTACAGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAATGCCAAGCTGCGGCAGCGAAACCTGAAGCTGCAAG s rn3.chr13 77744307 78 - 111348958 AGTTACAGATGAAACTCCTGCGCAAGAAGATCGAAAAGCGGAACGCCAAGCTGCGGCAACGGAACCTGAAGCTGCAAG s canFam1.chr19 21837744 78 - 56914383 ATCTACCCATGAAACTCCTGCGCAAGAAGATAGAGAAACGGAATCTCAAGTTGCGCCAGCGAAACCTGAAGCTCCGGG s galGal2.chr7 7730657 78 - 37338262 ACCTGCCCATGCGGCTGCTCCGCAAGAAGATCCACAAGAGGAACCTGAAGCTGCGGCAGCGCAACCTGAAGCTGCGGG a score=141298.0 s hg17.chr2 118394148 8 + 243018229 TCAGGAGG s panTro1.chr13 4415862 8 + 134309081 TCAGGAGG s mm5.chr1 73920237 8 - 195203927 TCAGGAGG s rn3.chr13 77811845 8 - 111348958 TCAGGAGG s canFam1.chr19 21899390 8 - 56914383 TCAGGAGG s galGal2.chr7 7752959 8 - 37338262 TCAGGAAG a score=65234.0 s hg17.chr2 118394156 46 + 243018229 CCTTCGCTTTCACCTTGGACAGCAGCATCTCGTTCTTGCGGCCCTC s panTro1.chr13 4415870 46 + 134309081 CCTTCGCTTTCACCTTGGACAGCAGCATCTCATTCTTGCGGCCCTC s mm5.chr1 73920245 46 - 195203927 CCTTGGCTTTGATCTTAGATAGTAATAGCTCATTCTTTCGGCCCTC s rn3.chr13 77811853 46 - 111348958 CCTTGGCTTTGATCTTAGACAGTAATAGCTCATTCTTTCGGCCCTC s canFam1.chr19 21899398 46 - 56914383 CCTTGGCTTTCACCTTGGACAGCAGCACCTCATTCTTGCGGCCCTC s galGal2.chr7 7752967 46 - 37338262 AACTAGCTTTCAGCTTGGACAGCAGCATTTCGTTCTTACGACATTC s danRer1.chr9 4164500 46 - 28422069 CTTTAGCCCTCAGTTTAGACAACAGCATCTCATTCTTACGGCACTC a score=68843.0 s hg17.chr2 220190202 40 + 243018229 ATGCTCAAAGCGGTGATCCTGATTGGAGGCCCTCAAAAGG s panTro1.chr13 110354917 40 + 134309081 ATGCTCAAAGCGGTGATCCTGATTGGAGGCCCTCAAAAGG s mm5.chr1 75883503 40 + 195203927 ATGCTCAAAGCTGTGATTCTCATTGGAGGCCCCCAGAAGG s rn3.chr9 74861356 40 + 113649943 ATGCTCAAAGCTGTGATCCTCATTGGAGGACCCCAGAAGG s canFam1.chr37 28991402 40 + 33897405 ATGCTCAAAGCTGTGATCCTGATTGGAGGCCCTCAAAAGG s fr1.chrUn 298594715 40 - 349519338 ATGTTGAAGGCAGTTATTTTAATCGGAGGCCCACAGAAGG s danRer1.chrUn 200789632 40 + 367113659 ATGCTGAAGGCTGTCATTCTTATCGGAGGCCCCCAAAAAG a score=2052.0 s hg17.chr2 220229609 2 + 243018229 TC s panTro1.chr13 110394704 2 + 134309081 TC s mm5.chr1 75920524 2 + 195203927 TT s rn3.chr9 74897410 2 + 113649943 TT s canFam1.chr37 29028801 2 + 33897405 TC s galGal2.chr7 14430359 2 - 37338262 TC s fr1.chrUn 298724631 2 - 349519338 TC s danRer1.chrUn 144716830 2 + 367113659 TT a score=1675466.0 s hg17.chr2 220229611 1258 + 243018229 AGGTGCTGTTGCCCTGCTCCTGTTCAAAGAGTAGCATGGCCAGCTGGGTTCGGGAGCCGAGGCCCTCAAGCACGCTCTGGAGGCAGCGGTGGTACAGGTCCTCACTGAGCCTCGCGCTGCACGTCTGGGCCCGGTAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGCACATGCAGACTGGAGAAGTGGAGGAACAGCTCGTACACATCCAGGCTCTCCAGCAGCTCCTCTTCTTGTTCTGAGGCTGCCGCCAGGCGCCCACGGGCTGCCACATAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCTGCCTGGCGATCAAAGCGGCCAGTGTCACGGCCCAGCTCTGGGGGCCCAGG----CCCTTGTGGTGG----------------------GGCCACAGCTGGGTGGAAGGCTTGGAAATGCATGGGAAAGAAGGCCTGCCAGCCGGAGATGGCATGCATGCGGCAGCGGTTCAGGAAGTCAGGCGTGAGCACCGTGTCTGGCCCGGCCAGCAGGAACAGTGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGTGGTGAGGGTGCGGCTGTCTGCACACTGAGCCATGGCACCCGGGCACCGGGGAAACGCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACATCTGCATGGGCCACGCGCTGGGCCTGGCGCGGCTCATACAGTAGCAGCAGGGTCAGGGCTGCCGCAGCATCACCAGGCTCCAGTGCTGCAGTGGCAAAGGCCTCCAAGAAGCCAGGGGCCAGGTCACGCTCAGCCGCAGCTAGAGGCAGCAGCACAGTGAGACGTGAGGCCTCAGTGACATAGGGCACAGGCAAGATCTCCACGCGGCTCAGCGGCCGGAGCAGCTGCACTCGGCGAGTGAGGGGCCGGCGGCCTCCCTGGGGGGTCAGTGCCTCCAGCTGCAAGTCCAGCGTGTATTCCATACCCCGGGCCGGATCAAAGCGTCGGTAGCCATTCACCAGCTGCTGCTTCTGGAGCCGCAAGGCCGGGTGGTAGCGGCGGTTCAGCTCCTCTAGAGCTGTCCCCAGAACATCGGCCACATCAGCCCGGTCAGCCCCACGCAGTGGGCAGCGGGGTGAGCCATCGGCGCAGGAGAAAGCGTGCTGCTCCGTGAAGTAGTCCCAGCGCAGCACCTCAAAGCGGGAGGCCGGGCGGGATGGTGCTGGAATACCCACGGGCCAAGCAGCTGCCTGGTCCCCATCAACGGCCAGATGGCTGGTATTCTGGATCTCCCA s panTro1.chr13 110394706 1258 + 134309081 AGGTGCTGTTGCCCTGCTCCTGTTCAAAGAGTAGCATGGCCAGCTGGGTTCGGGAGCCGAGGCCCTCAAGCACGCTCTGGCGGCAGCGGTGGTACAGGTCCTCACTGAGCCTCGCGCTGCACGTCTGGGCCCGGTAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGCACATGCAGACTGGAGAAGTGGAGGAACAGCTCGTACACATCCAGGCTCTCCAGCAGCTCCTCTTCTTGTTCTGAGGCTGCCGCCAGGCGCCCACGGGCTGCCACGTAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCTGCCTGGCGATCAAAGCGGCCAGTGTCACGGCCCAGCTCTGGGGGCCCAGG----CCCTTGTGGTGG----------------------GGCCACAGCTGGGTGGAAGGCTTGGAAATGCATGGGAAAGAAGGCCTGCCAGCCGGAGATGGCATGCATGCGGCAGCGGTTCAGGAAGTCAGGCGTGAGCACCGTGTCTGGCCCGGCCAGCAGGAACAGTGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGTGGTGAGGGTGCGGCTGTCTGCACACTGAGCCATGGCACCCGGGCACCGGGGAAACGCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACATCTGCGTGGGCCGCGCGCTGGGCCTGGCGCGGCTCATACAGTAGCAGCAGGGTCAGGGCTGCCGCAGCATCACCAGGCTCCAGTGCTGCAGTGGCAAAGGCCTCCAAGAAGCCAGGGGCCAGGTCACGCTCAGCCGCAGCTAGAGGCAGCAGCACAGTGAGACGTGAGGCCTCAGTGACATAGGGCACAGGCAAGATCTCCACGCGGCTCAGTGGCCGGAGCAGCTGCACTCGGCGAGTGAGGGGCCGGCGGCCTCCCTGGGGGGTCAGTGCCTCCAGCTGCAAGTCTAGCATGTATTCCATACCCCGGGCCGGATCAAAGCGTCGGTAGCCATTCACCAGCTGCTGCTTCTGGAGCCGCAAGGCCGGGTGGTAGCGGCGGTTGAGCTCCTCTAGAGCTGTCCCCAGAACATCGGCCACATCAGCCCGGTCAGCCCCACGCAGTGGGCAGCGGGGTGAGCCATCGGCGCAAGAGAAAGCGTGCTGCTCCGTGAAGTAGTCCCAGCGCAGCACCTCAAAGCGGGAGGCCGGGCGGGATGGTGCTGGAATGCCCACGGGCCAAGCAGCTGCCCGGTCCCCATCAACGGCCAGACGGCTGGTATTCTGGATCTCCCA s mm5.chr1 75920526 1255 + 195203927 AGGTGCTGTTCCCCTGTTCCTGCTCAAAGAGCAGCATGGCAAGCTGGGTGCGGGAGCCAAGGCCCTCAAGTACGCTCTGGCGACAGCGGTGGTAAAGGTCTTCACTGAGCCGTGCACTGCACGGCTGGGCCCGGTAGCGCTGCAGCAAGGCTGGCTCTACTGCTCTCAGCACGTGCAAGTTGGAGAAGCGCAGAAACAACTCGTACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCTCCGAGGCCGCCACCAGCCGGCCACGGGCCGCCACATAGTCGGAGTTGTAGAAGCATGCCTCACTGGCAGCCTGGCGATCAAAGTGACCGGTGTCACGGCCCAGCTCTGGTGGCCCAGG----GCCCTGAGGTGG----------------------AGCCACAGCAGGGTGGAAGGCCTGGAAGTGCATGGGGAAGAAGGCCTGCCAGCCAGAGATGGCATGCATGCGGCAGCGGTTCAGGAAATCAGGTGTGAGTACCGTGTCTGGCCCGGCCAGCAGGAACAGAGTGTCTAGTGGGTGCTTCTTGGACAGCAGATCCATGAGACGCAGTGGAGAGGGCGCTGCTGTCTGCACACTGAGCCAGGGCACCCGGGCACCAGGGAAACGCCGCTCTAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACGTCTGAGTGGGCTGCCCGCTGGGCCTGGCGTGGCTCATACAGCAGCAGCAGGGTCAAGGCTGCT---GCATCACCAGGTTCCAGGGCTGCAGTGGCAAAGGCTTCTAAGAAGCCAGAAGCCAGGTCTCGTTCCGCTGCAGCCAGCGGCAGTAGCACAGTGAGCCGAGAAGCCTCGGTGACATAGGGTACAGGCAAGATCTCCACTCGGCTCAAGGGCCGAAGGAGCTGCACCCTGCGGGTGAGGGGCCAGCGGCCACCCTGGGGTGTCAGCGCTTCCAGCTGCAGGTCTAGTGTGTACTCCATGCCTCGGGCTGGATCAAAACGCCGGTAGCCGTTCACCAGCTGTTGCTTCTGGAGCTGCAGCGCTGGCTGGTAACGGCGGTTGAGCTCCTCTAAGGCTGTCCCCAGGACGTCAGCCACATCAGCCTGGTCGGCCCCACGCAACGGGCAGCGGGGAGAGCCATCGGCGCAGGAGAACGCGTATTGTTCTGTGAAGTAGTCCCAGCGCAGAACCTCAAAGCGTGAGGCAGGGCGAGACGGTGCTGGGATGCCCACTGGCCAGGCAGAGGCTCTCTCCCCATCAGCAGCCAGTCGGCTGGTATTCTGGATCTCCCA s rn3.chr9 74897412 1255 + 113649943 AGGTGCTGTTACCCTGTTCCTGTTCAAAGAGCAGCATGGCAAGCTGGGTGCGGGAGCCAAGGCCCTCAAGCACGCTCTGGCGACAGCGGTGATAAAGGTCCTCGCTGAGCCGAGCGCTGCATGGCTGGGCCCGGTAGCGCTGCAGCAAGGCTGGTTCCACTGCCCTCAGCACATGCAAGCTAGAGAAGCGTAGAAACAACTCATACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCTCGGAGACTGCCACCAGCCGTCCACGGGCCGCCACATAGTCGGAGTTGTAGAAGCATGCCTCGCTGGCAGCCTGACGATCAAAGTGGCCGGTGTCACGGCCCAGTTCTGGTGGCCCAGG----GCCCTGAGGTGG----------------------AGCCACAGCAGGGTGGAAGGCCTGGAAGTGCATGGGAAAGAAGGCTTGCCAGCCCGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGTGTGAGCACTGTGTCTGGCCCGGCCAGCAGGAACAGAGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGCGGAGAGGGCGCGGATGTCTGTACACTGAGCCAGGGCACTCGGGCACCAGGGAAACGCCGCTCTAGCTCGGCCACGTGGGCTTTGACGGGTGCGAAGACATCTGCGTGGGCTGCCCGCTGGGCCTGGCGTGGCTCATACAGCAGCAGCAGGGTCAAGGCTGCG---GCATCGCCAGGTTCCAGTGCTGCAGTGGCAAAGGCTTCTAGGAAGCCAGATGCCAGGTCACACTCTGCTGCAGCCAGAGGCAGCAGCACAGTGACCCGAGAAGCCTCGGTGACATAGGGCACAGGCAAGATCTCCACTCGGCTCAAGGGCCGAAGGAGCTGTACCCTGTGGGTGAGGGGCCAGCGGCCACCCTGGGGCGTCAGCGCTTCCAGCTGCAAGTCTAGTGTGTACTCCATACCTCGGGCTGGATCAAAACGCCGGTAGCCATTCACCAGCTGTTGCTTCTGGAGCCGCAGTGCTGGCTGGTAACGGCGGTTGAGCTCCTCTAAGGCTGTTCCTAGGACATCAGCCACATCGGCCTGGTCGGCCCCACGCAGCAGGCAGCGGGGTGAGCCGTCAGCACAGGAGAAAGTGTGCTGTTCCGTGAAGTAGTCCCAGCGCAGAACCTCAAAGCGCGAGGCAGGGCGAGACGGCGCTGGAATGCCCACTGGCCAGGTAGAAGCCCTCTCCCCATCAGCAGCCAGTCTGCTGGTATTCTGGATCTCCCA s canFam1.chr37 29028803 1258 + 33897405 AGGTGCTGTTGCCCTGCTCCTGCTCAAAGAGCAGCATGGCCAGCTGGGTGCGGGAGCCCAGGCCCTCCAGCTCGCTCTGGCGGCAGCGGTGGTACAGGTCCTCGCTGAGCCGCGCGCTGCACGCCTGCGCCCGGTAGCGCTGCAGCAGCGCTGGTTCCACGGCGCGCAGCACGTGTAGGCCCGAGAAGCGCAGGAACAGCTCGTACACGTCCGTGCTCTCCAGCAGCTCCTCTTCCTGCTCCGAGGCCGCTGCCAGCCGTCCGCGGGCTGCCACGTAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCCGCCTGGCGGTCGAAGCGGCCCGTGTCTCGGCCCAGCTccgggggcccggg----gccctggggggg----------------------cgccacggccgggTGGAAGGCCTGGAAGTGCATGGGGAAGAAGGCCTGCCAGCCAGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGCGTGAGCACCGTGTCGGGCCCGGCCAGCAGGAACAGCGTGTCCAGCGGGTGCTTCTTGGAGAGCAGGTCCATGAGGCGCAGCGGCGAGGGTGCAGCTGTCTGCACGCTGAGCCAGGGCACCCGGGCACCCGGGAAACGCCGCTCGAGTTCCGCCACGTGGGCCTTGACAGGCGCAAAGACATCTGCGTGGGCCGCCCGCTGGGCCTGTCGTGGCTCGTACAGGAGCAGCAGGGTCAGGGCTGCAGCCGCGTCACCCGGCTCCAGCGCCGCGGTGGCGAAGGCCTCCAGGAAGCCAGGGGCCAGGTCCCGCTCGGCCGCAGCCAGAGGCAGCAACACGGTGAGACGCGACGCCTCGGTGACGTAGGGCACAGGCAGGATCTCCACGCGGCTCAGGGGCCGCAGCAGCTGCACCCGGCGGGTGAGGGGCCGGCGGCCGCCCTGCGGGGTCAGCACCTCCAGCTGCAGGTCCAGCGTGTACTCCATGCCGCGGGCAGGATCGAAGCGCCGGTAGCCGTTGACCAGCTGCTGCTTCTCGAGCCGCAGGGCCGGGTGGTAGCGGCGGTTGAGCTCTTCCAGGGCGGCACCCAGCACGTCGGCCACGTCGGCCCGGTCGGCCCCTCGCAGCGGGCAGCGGGGCGAGCCGTCGGCGCAGGAGAAGGCGTGCTGCTCTGTGAAATAGTCCCAGCGCAGCACCTCGAAGCGAGAGGCCGGGCGGGATGGTGCGGGAATGCCCACGGGCCAGGCGGCCGCCCGCTCGCCGTCAGCTGCCAGGTGGCTGGTGTTCTGGATCTCCCA s galGal2.chr7 14430361 1258 - 37338262 AGGTGCTGTTCCCCTGCTCCTGCTCAAAGAGCACCATGGCCAACTGGGAGCGGGACCCAACGCCCTCCAGGCTGCTCTGCACGCAGCGGTGGTAGATCTCCTCACTGAGCCGCGGGTTGCAGGCCTGGTGCCGGTAGTGCTGCAGCAGGGCGGGCTCCACGGCCCGGAAGACGTGAAGGTTGGAGTACTTGATGAACATATCGTAGATGTCCAGGGTCTCCAGGATGTCCTCATTCTCCTGCACGTCACCCGCCATGCGGGTGCGTGCTGCCATGTAGTCAGCATTGTAGAAGCAGGCCTCATGGAAGACATCGCGGTCAAAGCGCCCTGCATCCCGCAGGAGGTCCAGTGTGGCAGGCGGTGCCTGGTTGTGG--------------------TAGGCGACGGCGGGGTTGTAGCCCTGGAAGTGGATGGGGAAGAAGACCTGCCAGTTGTTGATGGTGTTCATCCGGCAGCGGTTCAGGAAGTCGACGGTGACCTCTGTGCCCACACCGGCCACAAAGAACAGCGTGTCCACGGGATGCTTCTTGGAGATGATGTCCATGACCTTGATTTGGGAGGGGGCATCTGTCTTCACGCTGATCCACGGGATCTTCACCTCGGCATACTTGCGCTCATACTCTGTGATCTGGGCCTTCACAGGGGCAAAGATGTCGTTCTGGGTCACCTGCTGGGCCTCGAATGGATCGTAGATGAACAGGAAGGTGAGCACCGCG---TTCTCGCTGCTCTCAAAGGCAGCTGCCGCATAGGCCTCCAGGAAGCGTGCGGCATGGTCCCGTTCGTGGGCAGTGAGCGGCAAGATGACGTTGATGCGGCTGGCCTCCGTCACATAGGGCATAGGGATGATCTCCACCTCGCTGAGGGGCCGCACCAGGTGCACGCGCTTGGTGACAGAGCGGCTGTGACCCTTCTGCGTGACCACCTCCACCTGCAGGTCCAGCGTGTACTCCATGCCGCGCGTAGGGTCAAAGCGCCGGTAGCCATTCACCAGCTGCTGCTTGCGGACATGCAGCACCGGCTGGTACTTGCGGTTCAGCTCCTCCATGGCTGTGGCCACCACGTCAGCCACATCAGCTAGGTCTGCGCCCTGCAGCTCGCATTTGGGGGAGCCATCCACGCAGGCATAGACCTGATCCTCTGTGAAGTAGTCCCAGCGCAGCACCTCGAAGCGAGTTTTGGGCTGGAATGGAGGAGGGATGCCGACAGGCCACGCGGCACTGTGGTCCCCATCTGCAGACAGGCTGCTGGCATTCTGGATCTC--- s fr1.chrUn 3409912 1273 + 349519338 AAGTGCTGTTGGCCTGCTCCTGCTCAAAGAGCGCCATGGCCAGGTGGGAGCGCGAGCCCAGCCCCTGTAGGTTACTGAGGACGCAGCGGTGGTAGACGTCCTCGCTGAAGCGGGGGTTGCAGGTCCGTCTCACGTACTTCTGGATCAGAGCCGGCTCCACGGCCCTGAAGACGTGCAGCCCCGAGTACCGCACAAATATGTCGTACACGTCCATGCTCTCCAGGAGCTCCTCGTTGTCCAAGAGGTCGGCCGCCATCTTGGTCCTCGCCGTCATGTAGTCGGCGTTGTAGAAGCAGGCCTCGTCAAACACGTGGCGGTCGAAGCGGCC---GTCCCGCAGCGACTC-GGAGGCGAAGG----CGGACGAGGCGGCCGAGGGCTGCTGGTCCCGGTACATGACGGCGGGGCTGAACTCCTGGAAGTGGATGGGGAAGAACACCTGCCAGTTGCTGATGGTGTTCATCCTGCAGCGGTTCAGGAAGTCGGCGTTGACCTCCGTCCACACGCTCGCCAGGAAGAAAAGCGTGTCCACCGGGTGCTTCTTGGAGATGATGTCCATCAGCTTGACCTGCGAGGGCACCTCCGTCTTCACGCTGATCCAGGGGATCTTCACGTCCCCGTAGCGCTTCTCCACCTCTCCGATCATGGCCTTGATGCCCGCGAACACGTCGGCCTGACTGACGCGCTGCGCGTCGAACGGGTCGTAGATGAACAGGAACGTGAGCAGGACG---TTGTCGCGGGCGTCCAAGGTGTTCATCACGTACATATCCAGGAAGTTGCCGACAAAGTCCTGGTCCTGGGCGGTGACGGGGAGGATGACCTGCACCCGGGTGGCCTCCGTCACGTACGGCATGGGGATGATCTCCACGGCGCTCAGAGGGCGCAGCAGGTTCACGCGCTTGGCGATGACTTGGCTGTGGTCCTTCTGGGTGTACGCCTCCAGCGCCAGGTCCAGCACGTACTCCATGCCGCGGGTGGGGTCGAAGCGCCTGTAACCGTTGAGCAGACGCCGCTTGGTGAAGCGGAGCTGCGGCTGGTAGCGCTCGTTCAGGCGCTCCACCGCGATCTCCAACACGGCGTCGACGTCCGCGCGGTCGGCGCCTCTCATCTCGCACTTGGGCGAGCCGTCGACGCAGGAGTAGATGTGCTCTTCCGTGAAGTATTCCCAGTTTATCACCTCGAAGCGAGTTCTCGGCTTAAACGGGGAGTTGATGCCGACGGGCCACGTGACTCCGGCTTTGCCCTCGGGCGTCAGCTCGCTCAGGTTGTTGATCTGCGT s danRer1.chrUn 144716832 1261 + 367113659 AAGTACTGTTGCCCTGTTCCTGTTCAAACAGCAGCATGGCGAGCTGAGAGCGTGATCCAAGGCTATCCAGGGTGCTTTGTACACACCTCTGGTAGATTTCTTCACTAAGGCGAGGATTACACGTTTGGTAGCTGTATTTCTGATGCAGGGCCGGCTCCACTGCTCGGAAAACATGGAGGCCAGAGTATTTGACGAACATGTCATAGATATCAAGGTTCTCCAGGATCTCCTCATTCTCCAGCACATCCGATGACATCCGGGTACGGGTCGCCATGTAGTCCGAGTTGTAGAAGCAAGCTTCGGTGAAGGAGCTGCGATCGAAAAGACCAGCCTCTTTGACCAAATCCAACGCACTGGGAAGAGGCTGGTTGTGA--------------------TAAGCGATGTCAGGATTGTAGTACTGGAAGTGGATTGGAAAGAACACCTGCCAGTTGTTGATGGAGTTCATCCGACAGCGATTGAGGAACTCTGAACTGATGCTTGTTTTTACCGTCGCAATGAAGAACAACGTGTCAACCGGGTGCTTCTTGGAGATGATGTCCATGAATTTGATTTGAGACGGACTTTCGCTTTTAACACTAATCCAGGGGATTTTGACTGCAGGATATCGATGTTCGTACGTACTGATTTGTGCTTTGATGCTGGAGAAGATGTCATTCTGGTTGACTTGTTGGGCCTCTATTGGATCGTAGATGAAGAGGAACGTCAAGATCGCA---TTCTCGCTGGTTTCGAATGCATTTGTGGCATACACTTCTAAAAACTGATGAACGTAATCTCGATCTTGAAGAGTAACGGGTAAGATGATATGAACTCTAGTTGCTTCTGTAACGTAAGGCATAGGGATGATCTCGATGCGACTGAGAGGTCTTACTAAGTGGACCCTCTTGGTAATAGAGCGACTGTGTCCTTTTTGGTTAACTACCTCCAATTGTAGGTCCAGGGTGTACTCCATACCTCTGGTGGGGTCAAAACGTCTGTATCCATTGATTAGCTGTTGCTTCTTTAGGTACAACACAGGCTTGTACTTTTTATTCAGTTCACCCATTGCTGTCTCAATGACATCGGCTACGTCTAGCTTGTCAACTCCACGAAGCTCGCATTTCGGAGAGCCATCGATGCAAGAGTAAACCTGATCCTCAGTGAAGTAATCCCACCGCAGGACCTCGAATCGTGTTTTGGGCTCAAAGGGTGGATTGATTCCAACTGGCCACAAAGCACTGCGGTTGCCCTCAAAAGCCACTACACTGACATTTCTAATTTCCGC a score=133281.0 s hg17.chr20 33330413 10 + 62435964 TCAGGTGAGG s panTro1.chr21 35343723 10 + 65473740 TCAGGTGAGG s mm5.chr2 155883450 10 + 181686250 TCATGTGAGG s rn3.chr14 87484150 10 + 112220682 TCATGTGAGT s canFam1.chr24 27188710 10 + 50732077 TCAGGTGAGG a score=135043.0 s hg17.chr20 33513606 186 + 62435964 ATGGAGACAAGAAGCCCTG---GGTTGAACAACATGAAGCCCCAGTCACTGCAGCT---GGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG s panTro1.chr21 35533536 186 + 65473740 ATGGAGACAAGAAGCCCTG---GGTTGAACAACATGAAGCCCCAGTCACTGCAGCT---GGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG s mm5.chr2 156025320 183 + 181686250 ATGGAGACAGGGAGCCCCG---GGTTG---AACATGAAGCCCCAGTCCTTGCAGCT---GGTGCTGGAGGGGCAGGTGCTGGCGCTGCAGCAGCAGATGGCCGAGAATCAGGCTGCCTCCTGGCGGAAACTGAAGAACTCCCAAGAGGCCCAGAAGAGACAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG s rn3.chr5 13191474 192 - 173106704 CTGCAGCTGGAGCAGGCTGTGCGGCTGGAGACTGGGGAGCTGGAGGCACAGGAGCCCCGGGGTCTGGTGCGGCAGAGCGTGGAGCTGAGGAGGCAGCTGCAGGAGGAGCAGGCCTCCTACCGGCGCAAGCTACAGGCCTACCAGGAGGGCCAGCAGCGGCAGGCCCAGCTAGTGCAGCGGCTGCAGGCCAAG s canFam1.chr24 27350813 186 + 50732077 ATGGAGACGCGAGGCCCTG---GGTTGAACAATATGAAGCCCCAGTCACTGCAGTT---GGTGCTGGAGGAGCAAGTACTAGCACTACAGCAGCAGATGGCAGAGAACCAAGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGGCAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG a score=79158.0 s hg17.chr20 33579500 27 + 62435964 CTAGGGAACCAGACCATCTTCCAAAAT s panTro1.chr21 35599874 27 + 65473740 CTAGGGAACCAGACCATCTTCCAAAAT s mm5.chr2 156065808 27 + 181686250 CTAGGGAATCAGACCATCTTCCAAAAT s rn3.chr3 146317055 26 + 170969371 CTAGGGAATCAGA-CGTCTTCCAAAAT s canFam1.chr24 27411797 27 + 50732077 CGAGGGCACTGGACCACCCTCCAAAAT a score=183752.0 s hg17.chr20 33593260 88 + 62435964 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG s panTro1.chr21 35611606 88 + 65473740 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG s mm5.chr2 156071489 88 + 181686250 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGTGCCACGG s rn3.chr3 146322266 88 + 170969371 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG s canFam1.chr24 27422888 88 + 50732077 ATGGAGGCGCTGGGGAAGCTCAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG s fr1.chrUn 60145707 88 - 349519338 ATGGATACTTTTAGCAAACTGAAACAGTTTGACGCTTATCCCAAAACTCTGGAGGATTTTAGGGTGAAGACATGGGGCGGTGCGACCG s danRer1.chr20 18851405 88 + 31913010 ATGGATGCGTTAAATAAACTCAAACAATTTGACGCGTATCCGAAAACTCTAGAGGACTTCAGGATCAAAACATGTGGAGGAGCCACGG a score=802859.0 s hg17.chr21 32707032 160 + 46944323 ATGCTTCTGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACCGACTTCTCTG s panTro1.chr22 32678009 160 + 47338174 ATGCTTCTGCCGGGACCCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACCGACTTCTCTG s mm5.chr16 91265497 160 + 98801893 ATGCTCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGCAGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTCCGCGCTCACCGATTTCTCTG s rn3.chr11 30818860 160 + 87800381 ATGGTCTTGCCCGGACACCCGCGTCTGCCGCCCGGGCCACAGCCACCGCAGAATCCCGGCCTCCGCAGGCAGGTAGAGCCTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTCCGCGCTCACCGATTTTTCCG s canFam1.chr31 30192155 160 + 41215879 ATGCTTCTGCCTGGACAcgcgcgcccgccgcccgcgccgcagcccgcgcAGCATCCCGGACTCCGCCGGCAGGTAGAGCCTCCCGGGCAGCTCCTGCGCCTCTTCTACTGCACCGTCCTGGTCTGTTCCAAGGAGATCGCGGCGCTCACGGACTTCTCCG a score=93692.0 s hg17.chr21 32869641 381 + 46944323 TCAGATTCGGCCCTGAAGGGCCACGCAGACCTCGGCCAAGGATGGGAAGGAGTCCAGGTGCCAGGCAGCCCAGGGCGAGTGGTGCCCACAGGCTTGGGCTGTGCTGTGCATAAGGGCCACACCTGAAGCTCGGCCACACCTGAGGCTCGGCCACCACATAGGCCCCGTTTCTTTACCAAGATAGGTTCCTGCAGAGGTCGTGAAGCTGCTGTGGTCATTTGCTGGCAGCGACGTGAAGATAGAATTCTTTCCTGACTCAACCAGGGGCACTCTCGTCTCCTCCCCGTGAGACCCGCAATGCAGGAAGCACCCACAGCTGCATGGACAGAACTGGGGCCTGGGAAAGAGGCCAGGAAGGTGCCAGATGAGAGGGCGCTCCAT s panTro1.chr22 32842524 381 + 47338174 TCAGATTCGGCCCTGAAGGGCTACGCAGACCTCGGCCAAGGATGGGAAGGAGTCCAGGTGCCAGGCAGCCCAGGGCGAGTGGTGCCCACAGGCTTGGGCTGTGCTGTGCATAAGGGCCACACCTGAAGCTCGGCCACACCTGAGGCTCAGCCACCAGATAGGCTCTGTTTCTTTACCGAGATAGGTTCCTGCAGAGGTCGTGAAGCTGCTGTGGTCATTTGCTGGCAGCGACGTGAAGATAGAATTCTTTCCTGACTCAACCAGGGGCACTCTTGGCTCCTCCCCGTGAGACCCGCAATGCAGGAAGCACCCACAGCTGCATGGACAGAACTGGGGCTTGGGAAAGAGGCCAGGCAGGTGCCAGATGAGAGGGCGCTCCAT a score=62310.0 s hg17.chr21 33321040 51 + 46944323 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCC s panTro1.chr22 33286911 51 + 47338174 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCC s mm5.chr16 91660624 51 + 98801893 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCC s rn3.chr11 31244293 51 + 87800381 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCGTCGTCGCCAGAACCC s canFam1.chr31 30690225 51 + 41215879 ATGGACTCGGACGCCAGCCTGGTGTCCAGTCGCCCGTCGTCACCAGAGCCC s galGal2.chr3 53622667 51 + 108638738 ATGAATTCTGACTCCAGCTCCGTCTCCAGCAGAGCCTCCTCGCCGGACATG s fr1.chrUn 314816718 51 - 349519338 ATGGACTCAGATACGAGCCGCATGTCGAGCAGACCCTCCTCCCCCGAGGTG a score=19085.0 s hg17.chr21 33321091 26 + 46944323 GATGACCTTTTTCTGCCGG----------------------------CCCGGAG s panTro1.chr22 33286962 26 + 47338174 GATGACCTTTTTCTGCCGG----------------------------CCCGGAG s mm5.chr16 91660675 26 + 98801893 GATGATCTTTTTCTGCCCG----------------------------CCCGGAG s rn3.chr11 31244344 26 + 87800381 GATGATCTTTTTCTGCCGG----------------------------CCCGGAG s canFam1.chr31 30690276 26 + 41215879 GATGACCTGTTTCTGCCGG----------------------------CCCGGAG s galGal2.chr3 53622718 54 + 108638738 GACGAGATGTACCTGCGGGAGcaccgccaccaccaccaccaccaccaccCGGAG s fr1.chrUn 314816769 22 - 349519338 GACGACATCTTCATGTCCA----------------------------GCC---- s danRer1.chr24 18057443 31 + 23152154 CATCAGCTGTTTCGAGCAA-----------------------AACGACCCGGAC a score=-194.0 s hg17.chr21 33321117 3 + 46944323 TAA s panTro1.chr22 33286988 3 + 47338174 TAA s mm5.chr16 91660701 3 + 98801893 CAA s rn3.chr11 31244370 3 + 87800381 CAA s canFam1.chr31 30690302 3 + 41215879 CAA s fr1.chrUn 314816791 3 - 349519338 TGA s danRer1.chr24 18057475 2 + 23152154 CG- a score=36.0 s hg17.chr21 33321117 7 + 46944323 TAAGGGC s fr1.chrUn 314816791 7 - 349519338 TGAAGAC s danRer1.chr24 18057474 7 + 23152154 CCGGTGC a score=260.0 s hg17.chr21 33321120 4 + 46944323 GGGC s panTro1.chr22 33286991 4 + 47338174 GGGC s mm5.chr16 91660704 4 + 98801893 GGGG s rn3.chr11 31244373 4 + 87800381 GGGG s canFam1.chr1 91988693 4 - 124897793 catc s fr1.chrUn 314816794 4 - 349519338 AGAC s danRer1.chr24 18057477 4 + 23152154 GTGC a score=24176.0 s hg17.chr21 33321124 110 + 46944323 AGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTC--------CTCGTCCACCCCGAGTGACTGCCCGCCGGAGCT----GAGCGCCGAGCTGCGCG-GCGCTATGGGCTCTGCGGGCGCGCA s panTro1.chr22 33286995 110 + 47338174 AGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTC--------CTCGTCCACCCCGAGCGACTGCCCGCCGGAGCT----GAGCGCCGAGCTGCGCG-GCGCTATGGGCTCTGCGGGCGCGCA s mm5.chr16 91660708 110 + 98801893 GGAAGCAGCAGCGGCTTCACAGGAGGGACTGTGTC--------CTCGTCCACGCCGAGCGACTGCCCGCCAGAGCT----GAGCTCCGAGCTACGAG-GGGCCATGGGCGCGTCAGGCGCGCA s rn3.chr11 31244377 110 + 87800381 GGAAGCAGCAGCGGCTTCACAGGAGGAACCGTGTC--------CTCATCCACGCCGAGCGACTGCCCGCCAGAGCT----GAGCTCCGAGCTGCGAG-GAGCCATGGGCACGGCGGGCGCGCA s canFam1.chr1 91988697 97 - 124897793 accaccgccaccaccaccaccaGGAGAGCCGTCTCAACTCGGTCTCCTCCACTCAGGGCGACATGGTGCAGAAGAT----GCCCGGGGAG---------------AGTCTCT-------CGCG s galGal2.chr3 53622772 75 + 108638738 ---------AGCCGCCTCA--------ACCCCGT---------CTCTTCCACGCAGGGCGACCTGGTGCAGAAGAT----GGCCGGGGAG---------------GGCCTGGCCCGGGGC--- s fr1.chrUn 314816798 83 - 349519338 --ATCCGTGCACGGCTTCTCCGGA---ACCGTGTC--------C---TCCACGCAGAGCGACTCCCCGCCGGACAT-------CGGGAGCCTGCGC---------GGCCTCTCCG-------- s danRer1.chr24 18057481 91 + 23152154 AGCCCGGGGGGCG-----AGCGGGCACGCTGGGTC---------------------------TGCCGACCGGATCTTTGTGTGTGAAATACGGCGAGAGCGCCAACAGGACTTCAGGCGCGGA a score=6480.0 s hg17.chr21 33321234 22 + 46944323 TCCTGGGGACAAGCTAGGAGGC s panTro1.chr22 33287105 22 + 47338174 TCCTGGGGACAAGCTAGGAGGC s mm5.chr16 91660818 22 + 98801893 TCCCGGGGACAAACTGGGCGGC s rn3.chr11 31244487 22 + 87800381 TCCCGGGGACAAACTGGGCGGC s canFam1.chr1 91988794 22 - 124897793 GGCCGGCGCCAAGGCCACGGGC s galGal2.chr3 53622847 18 + 108638738 ----GGCCCCAAGGCGCAGGGG s fr1.chrUn 314816881 12 - 349519338 --CCACTGACGAGG-------- a score=215890.0 s hg17.chr21 33321256 192 + 46944323 AGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCG-TCGGCGGCTGCGTCGTCCACCAAGAAGGACAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTCCGCGAGGTCATGCCG s panTro1.chr22 33287127 192 + 47338174 AGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCG-TCGGCGGCTGCGTCGTCCACCAAGAAGGACAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTGCGCGAGGTCATGCCG s mm5.chr16 91660840 192 + 98801893 GGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCC-TCGGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGGGAGGTCATGCCT s rn3.chr11 31244509 192 + 87800381 GGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCG-TCGGCGGCCACGTCTTCCACCAAGAAAGATAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGAGGGAGGTCATGCCG s canFam1.chr1 91988816 138 - 124897793 GAGAGTAGCAAGT-------------------------------------------------------ACAAAATCAAGAAGCAGCTGTCGGAGCAGGACCTACAGCAATTACGGCTGAAGATCAACGGCCGCGAGCGCAAGCGGATGCACGACCTCAACCTAGCCATGGACGGGCTGCGCGAGGTCATGCCC s galGal2.chr3 53622865 138 + 108638738 GAGGGCGGCAAGT-------------------------------------------------------ACAAGATCAAGAAGCAGCTCTCGGAGCAGGACCTGCAGCAGCTGCGGCTCAAGATCAACGGGCGGGAGCGCAAGCGGATGCACGACCTCAACCTGGCCATGGACGGGCTGCGGGAGGTGATGCCC s fr1.chrUn 314816893 149 - 349519338 ------------------------AGTCCCTCGCCATCCG--------------------GCTCGCAAAGAAAGATCGGAAAGTGCTTTCGGACAACGAACTGCAGACGATCCGCCTCAAAATCAACAGCCGCGAGAGGAAAAGGATGCACGACCTCAACGTGGCCATGGACGGACTCCGGGAAGTCATGCCC s danRer1.chr25 10119771 182 - 17189730 AGCTGCTGCAGAAGATGGCCAGCGAGCACCTC----TCCAAGACGCCCAGCGGCAGCAAGT-------ACAAGCTGAAGAAGCAGGTGACCGAGCATGAGATCCAGCAGCTGCGGCTCAAGATCAACGGGAGGGAGCGCAAGCGCATGCACGACCTGAATTTGGCGATGGACGGGCTCCGAGAGGTCATGCCG a score=323301.0 s hg17.chr21 33321448 176 + 46944323 TACGCACACGGCCCTTCGGTGCGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------C------CACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTC s panTro1.chr22 33287319 176 + 47338174 TACGCACACGGCCCTTCGGTGCGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------C------CACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTC s mm5.chr16 91661032 176 + 98801893 TACGCGCACGGGCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------T------CACCACGCCGGCTTCCACCCATCGGCCTGTGGCGGGCTGGCACACTC s rn3.chr11 31244701 176 + 87800381 TACGCGCACGGCCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTGATGCTCACCAACTCGCTGGAGGAGATGAAGAGACTGGTGAGCGAGATTTACGGGGG------------T------CACCACGCCGGCTTCCACCCGTCGGCCTGTGGCGGGCTGGCACACTC s canFam1.chr1 91988954 167 - 124897793 TACGCGCACGGGCCCTCGGTGCGCAAGCTCTCCAAGATCGCCACTCTCCTGCTGGCCAGAAACTACATCCTCATGCTCACCAGCTCCCTGGAGGAGATGAAGAGGTTGGTTGGCGAGATCTACGGGGG------------C------CACCACTCTGCCTTCCA---------CTGCGGGACCGTGGGCCACTC s galGal2.chr3 53623003 167 + 108638738 TACGCGCACGGCCCCTCCGTCCGGAAACTCTCCAAAATCGCCACCCTGCTGCTGGCCAGAAACTACATCCTGATGCTCACCAGCTCCCTGGAGGAGATGAAGCGCCTGGTGGGGGAGATCTACGGTGG------------C------CACCACTCGGCCTTCCA---------CTGCGGCACCGTGGGCCACTc s fr1.chrUn 314817042 182 - 349519338 TACGCGCACGGACCGTCGGTGCGCAAACTCTCCAAAATCGCCACGCTGCTCCTGGCGAGAAATTACATCCTGATGCTGAGCAACTCGCTGGAAGAGATGAAGCGGCTGGTGAGCGAGATCTACGGCAG------------CGGCGCACACCACGGTGGCTTCCACCCGACAGCTTGTGGGACAATGACACACGC s danRer1.chrNA 310476113 188 - 390413307 TACGCTCACGGGCCGTCTGTGCGCAAGCTCTCTAAAATAGCCACTCTGCTGCTCGCGCGCAACTACATCCTTATGCTGAGCAACTCGCTGGAGGAGATGAAGCGGCTCGTGAGCGAGATCTACGGCGGAGGGAGCGGGGCC------CATCACGCCGGTTTCCATCCGTCCAGTTGTGGCACTCTTACGCACGC a score=23510.0 s hg17.chr21 33321624 71 + 46944323 CGCGCCCCTGCCC-GCCGC-----------CACCGCGCACCCGGCAGCAGCAG-CGCACGCCGCACATCACCCCGCGGTGCACC s panTro1.chr22 33287495 71 + 47338174 TGCGCCCCTGCCC-GCCGC-----------CACCGCGCACCCGGCAGCAGCAG-CGCACGCCGCACATCACCCCGCGGTGCACC s mm5.chr16 91661208 71 + 98801893 GGCGCCTCTACCC-ACCGC-----------CACGGCGCACCCCGCGGCCGCCG-CGCACGCCGCGCACCACCCGGCCGTGCACC s rn3.chr11 31244877 71 + 87800381 GACGCCTCTACCC-ACCGC-----------CACGGCGCACCCTGCAGCCGCCG-CGCACGCCGCGCACCACCCGGCGGTGCATC s canFam1.chr1 91989121 45 - 124897793 CGC-----------------------------CGGC-CACCCAGCACACGCCG-CCAACGCCGTGCACC------CGGTGCA-- s galGal2.chr20 5296387 84 - 13506680 CACGGCCTTGCCCGGCTGCCCCGAGAAATGCACTGCCTTCACAGGAGCCGCCTCCGCGCTCTGCAAACACTGCAGCGACAAGCC s fr1.chrUn 314817224 56 - 349519338 GGGGCCCGTGCCGGGACAC-----------CCGAGCACAT--------------CTCACAGCTCACACC---CGGCGGTGCACC s danRer1.chrNA 310476301 62 - 390413307 GGCGGCGGCTCC--GTTAC-------------CGGGTCACCCCGCTGCTGTCT-CGCATTCCTCTCACC------CGGTGCACC a score=9256.0 s hg17.chr21 33321695 9 + 46944323 A-CCCCATCc s panTro1.chr22 33287566 10 + 47338174 AACCCCATCc s mm5.chr16 91661279 9 + 98801893 A-CCCCATCC s rn3.chr11 31244948 9 + 87800381 A-CCCCATCC s canFam1.chr1 91989166 8 - 124897793 --CCCCATCC s fr1.chrUn 314817280 9 - 349519338 A-CCCGCTCC s danRer1.chrNA 310476363 9 - 390413307 A-TCCTCTGC a score=14345.0 s hg17.chr21 33321704 48 + 46944323 tgccgcccgccgccgcagcggctgctgccgccgctgcagccgcggctg s panTro1.chr22 33287576 48 + 47338174 tgccgcctgccgccgcagcggctgctgccgccgctgcagccgcggctg s mm5.chr16 91661288 48 + 98801893 TCCCTCCCGCAGCCGCCGCCGCCGCCGCAGCCGCCGCCGCCGCAGCGG s rn3.chr11 31244957 48 + 87800381 TCCCTCCAGCAGCCGCGGCCGCAGCCGCCGCAGCCGCTGCCGCAGCGG s canFam1.chr1 91989174 39 - 124897793 TG------GGCGGCGCGCTCTCGTCCGGCAACGCCTC-GTCGCCGC-- a score=4230.0 s hg17.chr21 33321752 3 + 46944323 TGT s panTro1.chr22 33287624 3 + 47338174 TGT s mm5.chr16 91661336 3 + 98801893 TGT s rn3.chr11 31245005 3 + 87800381 TGT s canFam1.chr1 91989213 3 - 124897793 TGT s fr1.chrUn 314817304 3 - 349519338 TGT a score=2889.0 s hg17.chr21 33321755 6 + 46944323 CCAGCG--- s panTro1.chr22 33287627 6 + 47338174 CCAGCG--- s mm5.chr16 91661339 6 + 98801893 CCAGCG--- s rn3.chr11 31245008 6 + 87800381 CCAGCG--- s canFam1.chr1 91989216 6 - 124897793 CCGCCG--- s fr1.chrUn 314817307 6 - 349519338 CCACGG--- s danRer1.chrNA 310476387 9 - 390413307 CCACCGCAG a score=65057.0 s hg17.chr21 33321761 77 + 46944323 CCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCT s panTro1.chr22 33287633 77 + 47338174 CCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCT s mm5.chr16 91661345 77 + 98801893 CCTCTCTACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCA s rn3.chr11 31245014 77 + 87800381 CTTCTCTGCCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCTCACGGCCTGCTCAAGTCTCCATCGGCA s canFam1.chr1 91989222 60 - 124897793 CCTCGCTGCCGG---------------CCATCGGCACCATTCGACCTCCCCACTCTCTGCTCAAGGCGCCCTCCA-- s galGal2.chr3 53623259 74 + 108638738 CGTCGCTGCCAG---CCTCGCTGCCGGCCCTGGGCACCATCCGGCCGCCCCACTCCCTGCTGAAGACCCCCTCCACT s fr1.chrUn 314817313 77 - 349519338 CGTCTCTGTCGGCACCTGGCATCGCCGCCGTCACATCTGTCAGACCTCATCATGGACTCCTCAAAGCTCCCGGTACC s danRer1.chrNA 310476396 68 - 390413307 CATCTCTTTCCGGGACGGGGCTTTCAGCCGTCA---------GGCCGCATCACGGACTCCTCAAAGCCCCGTCAGCC a score=100.0 s hg17.chr21 33321838 1 + 46944323 g s danRer1.chrNA 310476464 1 - 390413307 G a score=16973.0 s hg17.chr21 33321838 36 + 46944323 gccgcggccgccccgctggggggcgggggcggcggc s panTro1.chr22 33287710 36 + 47338174 GCCGCAgccgccccgctggggggcgggggcggcggc s mm5.chr16 91661422 36 + 98801893 GCCGCAGCCGCCCCTCTCGGAGGCGGGGGTGGAGGC s rn3.chr11 31245091 36 + 87800381 GCCGCGGCCGCCCCTCTCGGAGGCGGGGGTGGAGGC s canFam1.chr1 91989282 15 - 124897793 --CGCCGCCGGCCCT-------------------GC a score=-1380.0 s hg17.chr21 33321838 36 + 46944323 gccgcggccgccccgctggggggcgggggcggcggc s fr1.chrUn 314817391 1 - 349519338 G----------------------------------- a score=627.0 s hg17.chr21 33321874 1 + 46944323 A s panTro1.chr22 33287746 1 + 47338174 A s mm5.chr16 91661458 1 + 98801893 A s rn3.chr11 31245127 1 + 87800381 A s canFam1.chr1 91989297 1 - 124897793 A s galGal2.chr3 53623346 1 + 108638738 A s fr1.chrUn 314817392 1 - 349519338 T a score=101521.0 s hg17.chr21 33321875 67 + 46944323 GTGGGGC----GAGCGGGGGCTTCCAGCACTGGGG---------C---GGCATGCCCTGCCCCTGCAGCATGTGCCAGGTGCC s panTro1.chr22 33287747 67 + 47338174 GTGGGGC----GAGCGGGGGCTTCCAGCACTGGGG---------C---GGCATGCCCTGCCCCTGCAGCATGTGCCAGGTGCC s mm5.chr16 91661459 67 + 98801893 GCGGTGG----CAGCGGTGGCTTCCAGCACTGGGG---------C---GGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGCC s rn3.chr11 31245128 67 + 87800381 GCGGTGG----CAGCGGTGGCTTCCAGCACTGGGG---------T---GGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGCC s canFam1.chr1 91989298 63 - 124897793 GCTGG--------GCAGCGGCTTCCAGCACTGGGC---------C---GGGCTGCCCTGCCCCTGCACCATCTGCCAGATGCC s galGal2.chr3 53623347 63 + 108638738 GCTCG--------GCGGAGGCTTCCAGCACTGGGC---------C---GGCTTGCCGTGCCCCTGCACCATCTGCCAGGTGCC s fr1.chrUn 314817393 80 - 349519338 GCGGGGCCCCTGGGAAGCAGTTTCCAGCACTGGGGTGTGGGCACC---GGGATGCCTTGTCCGTGCAGCATGTGCCAAGTTCC s danRer1.chrNA 310476467 74 - 390413307 GCTGGGCCTCTGGGCGCGGGTTTCCAGCACTGGGG---------TGCGGGGATCCCTTGTCCGTGTAGCATGTGCCAGGTGCC a score=77095.0 s hg17.chr21 33321942 70 + 46944323 GCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCAGCCTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA s panTro1.chr22 33287814 70 + 47338174 GCCGCCGCACCACCACGTGTCGGCCATGGGCGCCGGCAGCCTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA s mm5.chr16 91661526 70 + 98801893 GCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA s rn3.chr11 31245195 70 + 87800381 GCCGCCACACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA s canFam1.chr31 30691121 70 + 41215879 GCCGCCGCACCCCCACGTGCCGGCCATGGGCGGGGGCAGCCTGCCGCGCCTTGCCTCCGACGC------------CAAG-TGA s galGal2.chr3 53623413 76 + 108638738 CCCGCCGCACCTC------TCTGCCCTCTCCGCCTCCGGCATGGGCCGGATCTCGGCGGACACCAAGGACCTGCTCAAG-TGA s fr1.chrUn 314817473 65 - 349519338 CCCTCCACACGTC------CCGGCCATCAGTACCGTTACCATGTCAAGGCTGTCCAGCGACTC------------CAAGTTGA s danRer1.chrNA 310476541 64 - 390413307 TCCGTCTCACGTT------CCCGGTATGAGCGCCGTCAGCATGCCACGGCTGACCAGTGACTC------------AAAA-TAA a score=113636.0 s hg17.chr21 33744994 2 + 46944323 TC s panTro1.chr22 33720891 2 + 47338174 TC s mm5.chr16 92040468 2 + 98801893 TC s rn3.chr11 31574511 2 + 87800381 TC s canFam1.chr31 31078278 2 + 41215879 TC a score=61167.0 s hg17.chr21 33744996 44 + 46944323 AGGTCCATAGCTCTTCGGTTCTTCCAAATTTGTAGATCAGAGTG s panTro1.chr22 33720893 44 + 47338174 AGGTCCATAGCTCTTCGGTTCTTCCAAATTTGTAGATCAGAGTG s mm5.chr16 92040470 44 + 98801893 AGGCCCAGAGCTCTTCAGTTCTTCCAAATTTGTAGATCAGAGTG s rn3.chr11 31574513 44 + 87800381 AGGCCCAGAGCTCTTCAGTTCTTCCGAATTTGTAGATCAGAGTG s canFam1.chr31 31078280 44 + 41215879 AGGTCCAAAGCTCTTCAGTTCTTCCAAATTTGTAGATCAGAGTG s fr1.chrUn 305707709 44 + 349519338 AGCCCCATAAATCTTCAGTGCGTCCGAACTTGTAGATCAGGGTG a score=71764.0 s hg17.chr22 30120223 42 + 49554710 ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCAGAG s panTro1.chr23 30222612 42 + 50034486 ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCAGAG s mm5.chr11 118487759 42 - 121648857 ATGAGCGGGACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG s rn3.chr14 28338530 42 - 112220682 ATGAGTGGGACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG s canFam1.chr26 27465575 42 + 41009621 ATGAGCAGCACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG s galGal2.chr15 3499721 42 - 12438626 ATGAGTGGGACTCTGGCGAAGATCGCGGAGATCGAGGCTGAG s fr1.chrUn 242087985 39 - 349519338 ATGAGT---ATTCTTGCTAAAATAGCAGAGATTGAAAATGAG a score=249684.0 s hg17.chr22 30160419 187 + 49554710 TCACTGTCGGTATTCCAATTCATCTACACTGATAACTTTGGCG---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTCTGGCTGGGGCGATGCTCCAGCTGGGA--GTGCATGTGGGGCAGGCCTGACCGGCTGGGCACGTTCTGAGGG s panTro1.chr23_random 7588856 187 - 16744317 TCACTGTCGGTATTCCAATTCATCTACACTGATAACTTTGGCG---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTCTGGCTGGGGCGATGCTCCAGCTGGGA--GTGCATGTGGGGCAGGCCTGACCGGCTGGGCACGTTCTGAGGG s mm5.chr11 118509980 187 - 121648857 TCACTGTCTATATTCCAGTTCATCTACACTGATGACTTTGGTG---GGCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTTTGGCTGGTACGATGCTCCAGCTGGGA--GTGCATGTGGGGCATGCCCGACCGGCTGGGTACATTCTGAGGA s rn3.chr14 28360090 187 - 112220682 TCACTGTCTATATTCCAGTTCATCTACACTGATGACTTTGGTG---GGCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCACTTGGCAAGACCCACGGGGGAGCT------GCTCCTTTGGCTGGTGCGATGCTCCAGCTGGGA--GTGCATATGGGGCAGGCCTGACCGGCTGGGTACATTCGGAGGA s canFam1.chr26 27493563 187 + 41009621 TCATTGACGGTACTCCAATTCATCTACACTGATGACTTTGGCA---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCACTTAGCGAGGCCTACTGGGGAGCT------GCTCCTCTGGCTGGGGCGATGTTCCAGCTGGGA--GTGCACGTGGGGCAGGCCTGACCTGGTGGGCACATTCTGAGGG s galGal2.chr15 3506922 187 - 12438626 TCACTGCCGATATTCCAGTTCATCTACACTGATGACTTTGGAT---GGCATGGAAGGGAGAGGCTGCTGCAAGACATCTGAACCAAACCACTTTGCAAGGCCAATGGGAGAGCC------ACTTCTCTGGCTGGGACGATGGTCGAGCTGCGC--GTGCCCATGAGATAATCCAGTCCGAGACGGCACATTCTGAGGT s danRer1.chrNA 320160139 177 + 390413307 TCACTGGCGGAACTCGAGCTCATCAACACTGATCACTTTAGTGGAAGGCATGGAAGGGAGAGGCTGCTGCAGCATGTCTGAACCAAACCACTTGGCCAGGCCCAGAGGGGGACTTGCACCTCTCCGCTGGTTTGTCCGATG--------GGGACCGTGGCTCTGGGAC-------------TGGGGGCCTCCTGAGGG a score=49183.0 s hg17.chr22 30160606 55 + 49554710 GTTGTCTGAACGCTGACAGCTGCTGCATGGGAACCAGAGCCTGGAGGATGCAGAA s panTro1.chr23_random 7589043 55 - 16744317 GTTGTCTGAACGCTGACAGCTGCTGCATGGGAACCAGAGCCTGGAGGATGCAGAA s mm5.chr11 118510167 52 - 121648857 ---GTCTGAACGCTGATAGCTGCTGCCTGGGAACTAGAGCCTGGAGGATGCAGAA s rn3.chr14 28360277 52 - 112220682 ---GTCTGAACGTTGATAGCTGCTGCCTGGGAACTAGAGCCTGGAGGATGCAGAA s canFam1.chr26 27493750 55 + 41009621 GTTGTCTGAACGCTGACAGCTGCTGCCGGGGAACCAGAGCCTGGAGGATGAAGAA s galGal2.chr15 3507109 55 - 12438626 GTTGTTTGCACACCAGCAGGTGATCCCTGTGCTCCAGTGCCTGTGGAATGTAAAG a score=2821.0 s hg17.chr22 30665273 6 + 49554710 ATGGGG s panTro1.chr23 30832251 6 + 50034486 ATGGGG s mm5.chr5 31452558 6 + 149219885 ATGGGG s rn3.chr14 28756724 6 - 112220682 ATGGGG s galGal2.chr15 3672628 6 - 12438626 ATGGGG s fr1.chrUn 333993217 6 - 349519338 ATGGTC s danRer1.chr10 6576471 6 - 25436222 ATGGCT a score=177812.0 s hg17.chr22 30665279 81 + 49554710 GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCTATGAAGGCG s panTro1.chr23 30832257 81 + 50034486 GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAAGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG s mm5.chr5 31452564 81 + 149219885 GATCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGATATGGCCTCCGCCATGAAGGCG s rn3.chr14 28756730 81 - 112220682 GACCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG s canFam1.chr26 27923330 81 + 41009621 GACCGAGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG s galGal2.chr15 3672634 81 - 12438626 GACCGAGAGCAGCTGCTGCAGCGAGCCCGCCTGGCCGAGCAGGCGGAGAGATACGACGACATGGCCTCGGCCATGAAGTCG s fr1.chrUn 333993223 81 - 349519338 GACCGCGAGCAGCTGGTGCAGAAAGCCAGGCTGGCTGAACAGGCTGAGAGATATGATGATATGGCCGCTGCAATGAAATCG s danRer1.chr10 6576477 81 - 25436222 GACCGGGAACAACTGATCCAAAGAGCCCGTCTGGCGGAGCAGGCGGAGCGCTATGATGATATGGCCTCCGCGATGAAGCTG a score=239048.0 s hg17.chr22 30939054 212 + 49554710 TC-AGGCATAGTAGCCGTGAATAAAGACCACCACAGCCAGGAGGAGGATGGCGTTGATGTTCACTATTGTCCTCCACGAGGGCCTCTCAGACGTGTCTGTGAGCTTCTTGCTCAAGGCTTCCTCCTCCTCCTTGGTTAGCTTGGGTC---CCTTCTG---------CAAACCGCAGAA-CAAGTCATAAGCTTTCTTGAGGCATCCACGTGATTTCTCAGGATAAT s panTro1.chr23 31094394 212 + 50034486 TC-AGGCATAGTAGCCGTGAATAAAGACCGTCACAGCCAGGAGGAGGATGGCGTTGATGTTCACTATTGTCCTCCACAAGGGCCTCTCAGACGTGTCTGTGAGCTTCTTGCTCAAGGCTTCCTCCTCCTCCTTGGTTAGCTTGGGTC---CCTTCTG---------CAAACCGCAGAA-CAAGTCATAAGCTTTCTTGAGGCATCCACGTGATTTCTCAGGATAAT s mm5.chr10 54573933 203 - 130633972 TC-AGGCAAAATAGCCATAGAAAAACGCTGCTACAGCCAAGAGGAGGATGACATTGACGTTCATGACCGTCCGCCAGAAGGGCTTCTCTGTTGTGTCTG------------TCAGAGCTTCCTCCTCTACTTTAGTCAACTTGAATTCAGCTCTTTG---------CAAACCACAGAA-TAGGTCACACGTCTTCTTGAGACATCCACGAGGTTTCTCAGTTTGGT s rn3.chr20 12876263 215 + 55296979 TC-AGGCAAAATAGCCATAGAAAAAAGCCGCCACGGCCAAGAGGACAATGACATTGACGTTCACGACCGTCCGCCAGAAGGGCTTCTCGGATGTGTCTGTCAGCTTCTTCTTCAGGGCTTCTTCCTCCTCTTTAGTCAGCTTGGGTTCCGCTCTTTG---------CAAACCACAGCA-TAGGTCATAAGTCTTCTTGAGACATCCACGAGGTTTCTCCGTTTGGT s canFam1.chr26 28103537 215 + 41009621 TC-AGGCAAAATAGCCATGGGCAAAGACAGCCACTGCTAGGAGTAGAATGGCATTGACATTCACTATAGTCCTCCATAAAGGCTTCTCAGATGTGTCTGTCAGCTTCTTTTTCTGGGCTTCTTCCTCTTCTTTGCTCAGTTTGGGACCTGTCTTCTG---------CAAACCACAAAA-TATGTCATAAGCCTTCCTGAGGCATCCACGGGGTTTCTCAGGATTAT s galGal2.chr15 8705700 216 + 12438626 CCTATGCAAAAAAGGCATGGCAAAATACAGCCACAGTCAGTAGGATGATGCCGTTGATATTCACAACATTCCTCCAAAGTGGCACTTCTGATGTGTCAGTCAGTTTCTTCTTCAGCGCTTCCTCTTCCTCCTTGCTCAGTTTGGGTC---CTTTTTG---TTGGTCTAAGCCACAGAA-CCAGTTGTAAGCTTTCTTTAGGCATCC---TGGGTCTTCACTTTCCT s fr1.chrUn 241992320 217 - 349519338 TT-ACGCGAAAAAGCCGTGGCAGAAGAAAGCGACAGCCAGGAGGATGAGGGCGTTGACGTTGACCACGTTCCTCCACAGCGGCTTCTCCGAGGTGTCCGTGAGCTTCCGCTTCATCTCGGCTTCTTCTTCCGGGGTCAGTTTGA------CCGTTTGGTTCTGTTCCAGCCCGCAGAAGCACATCAC-CGCCTTCTTGC-ACAGACCCGGTTGTTCTTGGGGTTCT s danRer1.chrUn 30145435 215 + 367113659 TT-AACCGAAGAAACCGTGGAAAAAGACGCAGACGGTGAGGAGGATAACGGCGTTAGCGTTGACCACATTTCTCCATAGAGGTTTCTCAGTGGTGTCGGTGAGCTTCATCTTCAGCTCAGCCTCCTGTTCTTTAGTCAGTTTGGGAGCATTGCCTTG------ATCGAAGCCGCAGAA-CCAGTTGTAGGCCTTCTTACAACAGCC---TGGCTCCTCACGCATCT a score=593066.0 s hg17.chr5 131424298 81 + 180857866 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGCCC s panTro1.chr4 137757118 81 + 188378868 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGTCC s mm5.chr11 67741889 85 - 121648857 ACCAGCATCCACACCATGCTGCTCCTGCTCCTGATGCTCTTCCACCTGGGACTCCAAGCTTCAATCAGTGGCCGGGATACCCACC s rn3.chr10 71032732 73 - 110733352 ACCAGCATCCTCTGCATGCTGCTTCCGCTCCTGATGCTCTTCCACCAGGGACTCC-AGTTTTCA-----------GGCAGTGCCC s canFam1.chr11 21697475 75 + 75769841 ATGAGCAGCTTCCCCATCCTGCACCTTCTCTTGCTCCTG------CTTGGATGCCAAGTCCCAC----AGGCACAGGGGAGGCCT a score=7416.0 s hg17.chr5 131424379 81 + 180857866 TTGAAGACAAGCTGGGTTA---ACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG s panTro1.chr4 137757199 81 + 188378868 TTGAAGACAAGCTGGGTTA---ACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG s mm5.chr11 67741976 57 - 121648857 TTAACCAGAACGTTGAATT---GCAGCTCT---ATTGTCAAGGAGATTATAG------GGAAGCTCCCA--------------- s canFam1.chr11 21697550 84 + 75769841 TTTTCGACAGACCTGCCTAAGCAATACTTCACAATGATCAATGAAATTATGGAGATGTTAAACAAGTCACCCTCGCCTTCAGAA a score=137534.0 s hg17.chr5 131556601 71 + 180857866 TCAGTCAACTTCTGTTGATCCACAAGGTCTCAAGAACTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA s panTro1.chr4 137889227 71 + 188378868 TCAGTCAACTTCTGTTGATCCACAAGGTCTCAAGAACTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA s mm5.chr11 67877858 71 - 121648857 TCAATCAACTTCCGTTGTTCCACAAGGTCTTAAGAACTCCTGTCCTCGCTCATGGAACCACTTGTTGGAGA s rn3.chr10 71169107 71 - 110733352 TCAATCGACTTCCGTTGTCCCACAAGGCCTCAAGAACTCCTGTCCTCGCTCATGGAACCACTTATTGGAGA s canFam1.chr11 21882340 71 + 75769841 TCAGTCAACTTCTGTTGATCCACATGGCCTCAAGAATTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA s galGal2.chr13 15754170 71 + 17279963 TCAGTCAACCTCTGTTCTCCCACAGGGTCTTAAGAATTCGTTTCCTCTTTCATGAAACCATTTGTTTGAAA s fr1.chrUn 144469271 71 + 349519338 TCAATCCACTTCTGTCAAACCGCAGGGTCTCCTGAATTCTTGACCTCGCTCATGAATCCACTTGTTCGACA s danRer1.chr17 23182922 71 - 35757233 TCATTCCACCTCAGATAATGCACAGGGCCGTCTGAATTCTTGACCTCGTTCATGTATCCATTTGTTCGATA a score=153108.0 s hg17.chr5 131621326 93 + 180857866 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG s panTro1.chr4 137954377 93 + 188378868 ATGCCCCATTCCGGGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCCGGAGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG s mm5.chr11 67940186 93 - 121648857 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGTGCTCCCCTCACCATCTCGCGG s rn3.chr10 71238657 93 - 110733352 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGTGACTTCAGTGCCCCCCTCACCATCTCGCGG s canFam1.chr11 21937834 93 + 75769841 ATGCCGCACTCCGTGACCCTACGCGGCCCGTCGCCCTGGGGCTTCCGCCTGGTAGGCGGCCGGGACTTCAGCGCACCCCTCACCATCTCGCGG s fr1.chrUn 144492794 93 + 349519338 ATGTCGCAGACCGTTACACTAAAGGGACCCTCTCCTTGGGGGTTCCGGCTGGTGGGAGGACGCGATTTCAGCACCCCGTTAACCATCTCCAGG s danRer1.chrUn 204956892 93 + 367113659 ATGTCTCACACTGTGACTCTCAGCGGTCCCTCGCCCTGGGGTTTTCGGCTGGTGGGTGGACGAGACTTCAGCACACCGCTCACCATTTCCAGA a score=705535.0 s hg17.chr5 131847541 125 + 180857866 CTACGGTGCACAGGGAATGGCCTGGATGGAG---GGCAACCGGACTGGGGT---CAGCAGGCTGTCCAGCCA---GGTGGCATCCATGTTCTTCAGATCTGTGAAGACACGCTGTAGACTCAGCCCAATATCCC s panTro1.chr4 138180513 125 + 188378868 CTACGGTGCACAGGGAATGGCCTGGATGGAG---GGCAACCGGACTGGGGT---CAGCAGGCTGTCCAGCCA---GGTGGCATCCATGTTCTTCAGATCTGTGAAGACACGCTGTAGACTCAGCCCAATATCCC s mm5.chr11 68232672 134 - 121648857 CTATGGTGCACAAGGAATGGCCTGAATAGAGGGCGGCAGCCTCACAGAGTTGCCCAGCAGGCTGTCCATCCACATGATGGAGTCCATATTCTTCATCTCCGTGAAGACATGTTGTATGCCTATCCCAATGTCCC s rn3.chr10 71497371 131 - 110733352 TTATGGTGCACAAGGAATAGCCTGAATGGAG---GGCGGCCTGGTAGAGTTGCCCAGCAGGGTGTCCATCCACATGACGGGGTCCATATTCTTCATCTCTGTGAAGACACGCTGTATGCCTATCTCGATGTCCC s canFam1.chr11 22141585 113 + 75769841 CTATGGTGCACAAGGAATGGCCTGGATGGAG---GGCAGTCTGACTGGAGT---CAACAGGCTGTCCAGCCA---GCTGGTGTCCATGTTCTTCAGATCTGAAGAGA------------TCAGCCCAACATACC a score=0.0 s hg17.chr6 108299600 2 + 170975699 TT a score=2325.0 s hg17.chr6 108299600 2 + 170975699 TT s panTro1.chr5 110600637 2 + 175429504 TT s mm5.chr10 87897895 2 - 130633972 TT s rn3.chr20 8534936 2 - 55296979 TT s canFam1.chr12 67925618 2 + 75455811 TT s galGal2.chr3 42632727 2 - 108638738 TT s fr1.chrUn 159061419 2 + 349519338 TC a score=237362.0 s hg17.chr6 108299602 142 + 170975699 AGTCATCATCTTCTTCTTCCTCCTCTTCTTCCTCAAAGCTATCTTCAAAGCCCTCACTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGCACAGGCTTAGCCTCATGAACTTCCAA s panTro1.chr5 110600639 142 + 175429504 AGTCATCATCATCTTCTTCCTCCTCTTCTTCCTCAAAGCTATCTTCAAAGCCCTCACTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGCACAGGCTTAGCCTCATGAACTTCCAA s mm5.chr10 87897897 142 - 130633972 AGTCTCCACCTTCCTCTTCCTCCTCCTCTTCCTCAAAGCTGTCTTCAAATCCTTCACTGTCTTCCTGGTCTTCGTCACCTTCTATCGC------TGTGTCCCACTGTGGGTGGTTTTCTGGCACAGGCTTGGCCTCATGAACTTCCAA s rn3.chr20 8534938 142 - 55296979 AGTCACCACCCTCCTCTTCCTCCTCCTCTTCCTCAAAGCTGTCTTCAAATCCTTCACTGTCTTCCTGGTCTTCGTCACCTTCTATTGC------TGTGTCCCACTGTGGGTGGTTTTCTGGCACGGGCTTGGCCTCATGAACTTCCAA s canFam1.chr12 67925620 142 + 75455811 AGTCATCATCTTCCTCCTCTTCTTCCTCCTCCTCAAAGCTATCTTCAAAGCCTTCGCTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGTACAGGCTTAGCCTCATGAACTTCCAA s galGal2.chr3 42632729 142 - 108638738 AATCATCATCTTCCTCCTCTTCCTCTTCTTCCTCAAAACTGTCTTCAAAGCCCTCGCTGTCTTCCTGGTCCTCATCACCTTCTATTGC------TGTATCCCACTGAGGATGATTTTCTGGCACTGGTTTTGCTTCATGAACTTCCAG s fr1.chrUn 159061421 136 + 349519338 AGTCATTGTCCTCGTCGTCGTCTTC------------ACTCTCCTCGATGCCGTCGCTGTCCTCCTGCTCCTCGTCCTCCTCCTCCGTGTCGGGGATGTCCCACTGAGGGTGATTGTCCAGCATAGCCTTGGCTTCGTGGACCTCCAG s danRer1.chr8 26343964 145 - 36410523 AATGATTTTAGTCGTTGTCTTCTTCGTCTTCCTCAGA---CTCCTCAATGCCGTCACTGTCCTCCTGGTCATCCTCCTCTTCCTCAGTTTCTGGGATGTCCCACTGCGGGTGGTTATCCATCATGGCCTTCGCCTCATGAACCTCCAG a score=78207.0 s hg17.chr6 108594662 25 + 170975699 ATGAGCAAGCCAGCCGGATCAACAA s panTro1.chr5 110895281 25 + 175429504 ATGAGCAAGCCAGCCGGATCAACAA s mm5.chr10 88143690 25 - 130633972 ATGAGCAAGCCCGCCGGATCAACAA s rn3.chr20 8761429 25 - 55296979 ATGAGCAAGCCCGCCGGATCAACAA s canFam1.chr12 68179741 25 + 75455811 ATGAGCAAGCCGGCCGGATCAACAA s fr1.chrUn 210130082 25 + 349519338 ATGAGCAAAGCCGCCGGCTCAACAA s danRer1.chr20 17232749 25 + 31913010 ATGAGCAAGCCTGCTGGTTCAACAA a score=89508.0 s hg17.chr6 108640045 50 + 170975699 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATTATTTCAT s panTro1.chr5 110940096 50 + 175429504 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATTATTTCAT s mm5.chr10 88191839 50 - 130633972 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATAATTTCAT s rn3.chr20 52647276 50 - 55296979 TCAGGCATGTCTTAGTTTAGATGGAGTATAGCTTTTATCTATGATTTCAT s canFam1.chr12 68222804 50 + 75455811 TCAGGCATGTCTTATTTTAGATGGTGTATAGCTTTTATCTATAATTTCGT s galGal2.chr3 42753356 50 - 108638738 TCAAGTATGTCTTATTTTGGATGGTGTGTAGTTTTTGTCTATTACTTCAT s fr1.chrUn 210136674 50 + 349519338 TCAGGCTTGTCTGATCTTAGAGGGGGTGTAGTTCTTGTCCAAGACCTTGT s danRer1.chr20 17245947 50 + 31913010 TTAGGCTTGTCTAATTTTGGAAGGGGTGTAGTTTTTATCCACAGACTCAT a score=92653.0 s hg17.chr6 108640095 56 + 170975699 CTTGTAAAAACATGTGAAGACAACG-TTCGTTCTGTGCCAGAGGATGACCAGCGACC s panTro1.chr5 110940146 56 + 175429504 CTTGTAAAAACATGTGAAGACAACG-TTCGTTCTGTGCCAGAGGATGACCAGCGACC s mm5.chr10 88191889 56 - 130633972 CCTGTAAAAACATGTGAAGACAACG-TTCATTCTGGGCCAGAGGATGACCAGCGACC s canFam1.chr12 68222854 57 + 75455811 CCTGTAAAAACATGTGAAGACAACGTTTCATTCTGTGCCAGAGGATGACCAGCAACC s galGal2.chr3 42753406 56 - 108638738 CTTGTAAGAACATATGAAGACAGCG-CTCATTCTGTGCCAGTGGGTGGCCTGCAACC s fr1.chrUn 210136724 56 + 349519338 CCTGTAGAAACATGTGCAGGCATCG-CTCGTTCTGGGCGAGAGGATGACCGGCCACT s danRer1.chr20 17245997 56 + 31913010 CCTGTAGGAACATGTGCAGGCAGCG-CTCATTTTGGGCCAATGGATGACCAGCAACT a score=53058.0 s hg17.chr6 108722976 139 + 170975699 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGGGGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG s panTro1.chr5 111023287 139 + 175429504 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGGGGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG s mm5.chr10 88248538 139 - 130633972 ATGGCGGCCTCCTGGTCGCCCTTGGTTACTCTGCGCTCCGCCGCGCGCAGCCGGCTGACTGGGAGAGGTGTTGGGTGCGGGGCGCGGGTCGTCGCAATCCCTCCTCCGGCCCCTGGCCCTGGGAAACCCCTGTGGAAAG s galGal2.chr3 42777490 100 - 108638738 ATGGCGGCGCCCGTGTCGCCCTTGGTTACT------------GCGTGGTGCCTGCTGCGGGCA--------TCGGCGCGGCGTGTTGTCCGTC--------------TGCTGCCGGCACGGG-----CCCTGCCGAGAG a score=607969.0 s hg17.chr7 113660517 168 + 158628139 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG s panTro1.chr6 115716623 168 + 161576975 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG s mm5.chr6 14955268 168 + 149721531 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTTTA---AGCAGCCAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG s rn3.chr4 40844510 168 + 187371129 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACTAGCTCAGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG s canFam1.chr14 56181068 168 + 63549963 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCGGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG s galGal2.chr1 165171657 168 - 188239860 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACGAGCACTGAAGTAAGCACAGTGGAACTCCTGCATCTGCAACAACAGCAG s fr1.chrUn 206218864 174 + 349519338 ATGATGCAGGAGTCGGCCACAGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCAGCCAATTAGAGGCTGGCAGTAGAGATGGGAGATCAAGCGCTGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAG s danRer1.chrUn 132907084 167 + 367113659 ATGATGCAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTA---AGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAG---TGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGC-ACAACAGCAG a score=398171.0 s hg17.chr7 116512159 230 + 158628139 TCATGTAGCGGTTGTCCAGTCAGCGTTCTTGGGGGCCTTGCATGTGTGCACATCCAGAGCTTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACCCACACTTGGTCATCCGGGTGACATGGGAGGTGTCGTAGCCTCTCCCACAGCACATGACTTCACAGCTGTCCATGCCCCGGGAAGTCAGGTTGCACACACGGCCTGCTGTACCCAGGGAGC s panTro1.chr6 118798885 230 + 161576975 TCATGTAGGGGTTGTCCAGTCAGCGTTCTTGGGGGCCTTGCATGTGTGCACATCCAGAGCTTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACCCACACTTGGTCATCCGGGTGACATGGGAGGTGTCGTAGCCTCTCCCACAGCACATGACTTCACAGCTGTCCATGCCCCGGGAAGTCAGGTTGCACACACGGCCTGCTGTACCCAGGGAGC s mm5.chr6 17732295 230 + 149721531 TCATGTAGGCGTCGCCCAGTCGGCACTCTTGGGGGCCTTGCATGTGTGCACGTCCAGGGCCTCCAGGCAGTCCTGACAGCGCACGGCACAGCACCAGTGGAATTTACACTCACACTTGGTCATCCGGGTGACGTGGGATGTGTCATAGCCTCTCCCACAACACATAACTTCGCAGCTGTCCATGCCTCGGGAAGTCAAGTTGCACACACGGCCCGCTGTACCCAGGGAGC s rn3.chr4 43819674 230 + 187371129 TCATGTAGGAGTTGTCCAGTCGGCACTCTTGGGGGCCTTGCATGTGTGCACGTCCAGGGCTTCCAGGCAGTCCTGACAGCGCACGGCACAGCACCAGTGGAATTTACACTCACACTTGGTCATCCGGGTGACATGGGATGTGTCATAGCCTCTCCCACAACACATAACTTCGCAGCTGTCCATGCCTCGGGAAGTCAAGTTGCACACACGGCCTGCTGTACCCAGGGAGC s canFam1.chr14 58698446 230 + 63549963 TCATGTGGGAGCCGCCCAGTCGGCGCTCGTGGGGGCCTTGCACGTGTGCACGTCTAGGGCCTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACTCGCACTTGGTCATCCGCGTGACGCGGGACGTGTCGTAGCCTCTCCCGCAGCACATGACCTCGCAGCTGTCCATGCCGCGGGAAGTCAGGTTGCACACGCGGCCCGCCGTCCCCGGGGAGC s galGal2.chr1 166556534 230 - 188239860 TCATGTCCGGGAGGCCCAGCCCGCAGCCTTGGGCGCCTTGCACGTGTGGATGTCCACCTCCTCCAGGCAGTCCTGGCAGCGCACCGCGCAGCACCAGTGGAACTTGCACTCGCATTTGGTCATCCTGCTGACGCGCAACGTGTCGTAGCCACGGCCGCAGCACATCACCTCACAGCTGTCCATGCCGCGGGACGTCTGGTTGCACACCCGGCCGGCCGTCCCCGGAGAGC s fr1.chrUn 117668262 224 - 349519338 --CCGCGGGGGGGGGCCAGGTCACGTC----AGGCCCTTGCAGGTGTGCACGTCCACCTGCTGGTGGCAGTCTCGGCAGAGCACGGCGCAGCACCAGTGGAACTTGCACTCGCACTTGGTGGTGCGGCCGACCCGGGACGTGTCGTAGCCCCGGCCGCAGCACATCACCTCGCAGCCGTCGGTGCCGGGGGACGTCCTGTTGCAGAGGCGCCCGCCGGTCCCCAGCGACC s danRer1.chrUn 193800262 230 - 367113659 TCAAGTCAAATCGAGCCAGTCGGGTTTCTTGTGTAGTTTACAAGTGTGGACGTCCACCGTTTCCTCGCAGTCTCTGCACTCCACAGCGCAGCACCATTTAAACTTGCACTCGCATTTGGTCATGCGGTTTACACGGGTGGTGTCGTACCCGCGGCCGCAGCACATGATCTCACAGCCGTCCATGCCTCTGGAGGACTTGTTGCACACCCGTCCTGACGTACCCAGAGAAC a score=266204.0 s hg17.chr7 116714099 53 + 158628139 ATGCAGAGGTCGCCTCTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG s panTro1.chr6 119004369 53 + 161576975 ATGCAGAGGTCGCCTCTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG s mm5.chr6 17978854 53 + 149721531 ATGCAGAAGTCGCCTTTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG s rn3.chr4 44072448 53 + 187371129 ATGCAGAAGTCGCCTCTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG s canFam1.chr14 58860070 53 + 63549963 ATGCAGAGGTCGCCCCTGGAAAAGGCCAGCGTCCTCTCCAAACTTTTCTTCAG a score=435383.0 s hg17.chr7 116945541 246 + 158628139 CTATTTGTTAGGTTTTTCTAGGTGTTCATTTTT---GTGTAAGTTCCAATTCAC---TTCTTTTGAGTTGTTGTTGATTTCTATTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGTGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAAACACCCAACTCAGTCTTTGATTTACTGTTGCTGCATTCAGTAGTTTGATGGCTGCTGAGAGGACTGACC---TC s panTro1.chr6 119229725 246 + 161576975 CTATTTGTTAGGTTTTTCTAGGTGTTCATTTTT---GTGTAAGTTCCAATTCTC---TTCTTTTGAGTTGTTGTTGATTTCTATTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGTGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAAACACCCAACTCAGTCTTTGATTTACTGTTGCTGCATTCAGTAGTTTGATGGCTGCTGAGAGGACTGACC---TC s mm5.chr6 18175809 246 + 149721531 CTATTTGTTTGGTTTTTCTACTTGTTCGTGTTT---GTCTAAGGTCCAATTCTC---TTCTTTGGAGTTGTTGTTGATTTCTAGTTGCCTTGTATTG---CTGCTGCTGCTGTTTCTTTTGGTGTTCTGGGAACACTGAGCGACTTTGCTTCTAGGAACAGGAAGAAAAGATTTAACGCTTGAGACACCCATCTCAGTCTTTGATTTACTGTTGCTGCATTCGGCAGTTTGACGGCTGCTGGGAGGACTGGCT---TC s rn3.chr4 44334350 249 + 187371129 CTATTTGTTACGTTTTTCTACGTGTTCGTGTTT---GTCTACGTTCCAATTCTC---TTCTTTGGAGTTGTTATTGATTTCTAGTTGCCTTGTATTACTGCTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGCGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAGACACCCAACTCAGTCTTGGATTTACTGTTGCTGCATTCGGTAGTTTGATGGCTGCTGAGAGGACTGGCT---TC s canFam1.chr14 59084680 249 + 63549963 CTGTTGGTTTGGTTTTGCGACTTGTTCGTTTTTTTGGTGGAAGTTTCAAATCTC---TTCTTTTGAGTTGTTGTTGATTTCGGTTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCGGGGAACACTGGGTGGCTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTCGAAACACCCAACTCCGTCTTGGATTGCCTGTTGCTGCATTCGGCCGCTTGGTGGCTGCTGAGAGGACTGGGC---TC s galGal2.chr1 166718518 245 - 188239860 TTATT-GTAAAATTTTTCTGTTTGTTCTTTTTTTT-GTGCAAATTCCAAATCTCTCTTTTTTTTGTGTCGTTATCTGCCTCTATTTGCCTTGTATTA---CTGCTGCTGCT--TTTTTTTAGTACTCTGAGAAGGCTGGGTGACTTTACTTCTCGGTACAGGAAGAAAAGATTTAACTCTTGAACCACCCAGCTCTGTCTTTGAT------TTGCTGCTTTCTACAGTTCGACTGCTGCTGAGAGGACGGATTCCATC a score=404599.0 s hg17.chr8 118881131 186 + 146274826 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAAAATAGAGACCTGGTCTTTAAAGAGGACGGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAACGGGAAGCCCGAGAAGT s panTro1.chr7 121606752 186 + 149542033 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAAAATAGAGACCTGGTCTTTAAAGAGGACGGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAACGGGAAGCCCGAGAAGT s mm5.chr15 53109074 186 + 104138553 TC---------AAAGTCGTTCAATGTCTCTGTATTTCTTCCTCAGAATTGAGACTTGGTCTTTAAAGAGGACCGGGTCCAGCCTCATCTGAGAATGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAATGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCGGCCCAGCGGGATGCTCGGGAAGT s rn3.chr7 89414686 186 + 143082968 TC---------AAAGTCGTTCAATGTCTCTGTATTTCTTCCTCAGGATTGAGACTTGGTCTTTAAAGAGGACCGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAGCGAGATGCTCGGGAAGT s canFam1.chr13 20213465 186 + 66159989 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAGAATAGAGACCTGGTCTTTAAAGAGGACAGGGTCGAGCCTCATCTGCGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAGCGGGAAGCCCGAGAAGT s galGal2.chr2 14208956 186 - 147590765 TC---------AGAGTCGTTCAATGTCTCGGTATTTCTTCCTCAGGATGGAGACCTGGTCTTTAAAGAGGACAGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATATAGCCAAACCAGCTGGCAAAAGTGTTCATGCAGCTCTGCCGTTGGGCGAAGTGGTCGGGGTCGGCCCAGCGTGAGGCCCGGGATGT s fr1.chrUn 293823575 195 - 349519338 TCTGGATGGTTATAGCCTCTCTATGTCCCTGTACTTCTTCCTCAGTATGGACACCTGGTCTTTGAAAAGGACCGGGTCCAGCCTCATCTGTGAGTGGACCAGGGGCATGCTGCCAAACCAGCTGGCAAACTTGTTCATGCAGGTCTGACGCTGGGCAAAGTGGTCCGGGTCGGCCCAGCGAGACGCTCGGGAGCT s danRer1.chrNA 25951001 186 + 390413307 TC---------AGAGTCGCTCGATGTCTCTGTACTTCTTGCGCAGTATTGATACCTGGTCCCTGAACAGAACAGGATCCAGTCTCATTTGCGAATGGACCAGGGGCATTGTGCCAAACCAGCTGGCAAATTTGTTCATGCACGTCTGCCTCTGGGCAAAATGGTCAGGGTCGGCCCAACGTGATGCACGGGACGT a score=116382.0 s hg17.chr9 128764156 33 + 138429268 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG s panTro1.chr11 113605485 33 + 123086034 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG s mm5.chr2 30226931 33 + 181686250 ATGGCCTGCCTGAGTCCCTCACAACTCAAGAAG s rn3.chr3 9310853 33 + 170969371 ATGGCCTGCCTGAGTCCCTCACAACTCAAGAAG s canFam1.chr9 6350671 33 - 53642819 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG a score=-3882.0 s hg17.chr9 128787519 1 + 138429268 C s mm5.chr2 30244450 0 + 181686250 - s rn3.chr3 9330108 0 + 170969371 - s canFam1.chr9 6365310 0 - 53642819 - s fr1.chrUn 290357729 0 - 349519338 - a score=2555.0 s hg17.chr9 128787520 5 + 138429268 TAGGC s mm5.chr2 30244450 5 + 181686250 TAGGC s rn3.chr3 9330108 5 + 170969371 TAGGC s canFam1.chr9 6365310 5 - 53642819 TATGC s galGal2.chr17 5207254 5 - 10632206 TAAAC s fr1.chrUn 290357729 5 - 349519338 CAAAG a score=71382.0 s hg17.chr9 128787525 62 + 138429268 CATCAGCAATATCAGGAGGTAGAGAGGCAGAAGGAGATTGTCTATCTGTGTAGTGTATGCTT s mm5.chr2 30244455 62 + 181686250 CATCAGCAATATCAGTAGGTAGAGAGGCAACAGGAGATTGTCTATCTGAGTAGTGTACGCTT s rn3.chr3 9330113 62 + 170969371 CATCAGCAAAATCAGTAGGTAGAGGGGCAACAGGAGATTGTCTATCTGAGTTGTGTATGCTT s canFam1.chr9 6365315 62 - 53642819 CATCAGCAATATCAGGAGGTAGAGAGGCAACAGGAGATTGTCTATCTGTGTCGTGTATGCTT s galGal2.chr17 5207259 62 - 10632206 CATAAACATGATCTGGAGGTAGAGAGGTAACAGCAAATTATCAATTTGGGTTGTGTAAGCTT s fr1.chrUn 290357734 62 - 349519338 CAACAGCAGGATAAAGAGGTAAAGTGGGAGGAGGAGGTTGTCTATTTGGAAGGTGTAAGCTT s danRer1.chr21 12648417 62 - 13488766 CAGCAGGAGGATGTAGAGATACAGAGGAAGCAGAAGGTTGTCAATCTGCGACGTATAGGCCT a score=2211540.0 s hg17.chr9 128787587 1515 + 138429268 CCAGGAGGGACA---CAGTGCTGATGGACCCCAAA--ATCCAAGCATAACTGTAGTTTAGGTCCACTCCACTGTCAAAGATTAAGATCAGAGCTACAGAAATGATCTGCGCAAATATAGATGTCATGGTCCCCTCAAAAGTCTTTTTGGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTACCGAAGATGGAGGCCACAGTATCACCCACACCCACAGCCAGGACACCGGCATAGGGGACGAGGGCCCTGGCTCCTCCCAGGCTACCCTTCTGTGTGCAGGGTCTGGGGATCAGCCAGATGGGAAGAGACATGCCCAGGAGCAGGTAGATGTGTGTCAGAATGAGTGGTCCACTGTCTCGTTCATCCAGAAAAAGGGACAGGAAGCTCCGTAGAGTGTGACCCAAAGGCTTGATGCGGAAGTAGCGCACATACTCCAGGAAGATGAAGACCGCCAGGCATACAGTGGCGGCTACATAGAGCAGTGGCCGGTCAAAGATGATACCTGGGATGTAGGTGGCTACCACAATGAGGTGGAAATACTTTCGGGCGATGGTGGGGGCCTGGTGCTTCTTGGACTCGGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCAAGGTGGCCAGCAGAGACCAATAGGCTAGGAGGTAGATGCGGGTGTCTGTCTGGAAGAGAAACTGAAGAAGCCAGAGCAGGGGATTCCTGCGGATGAGCCGGTGCAGCCAGGGTAGGACCACACCAAGGCTCAGCACACAGGTCATGAGGTGGAAGAAGATGGAGGAGGCCCAGGTGCCTGAGTCCATGAAGACAAACAGAGTGCTGAAGAAAATGCCCATGAGTACCATCCCTACTACCACCACCAGCAGGAAGAAGTCCACTGGGTC---CCCCTGACTTTCCACCAGTGTCAGAGAGCGCTTGATGAGCTGGTTGAGGACAAAGCTAATGCCACCCAATACCAGCAGTGCCTCACCAGGGGTGAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAAGATCAGAAGGACTTCCAGGACTTCGATCACCTCCCCCACGCTCAACGAGTGCTTCATGATATAAATGATAACACCTCCAGCCAAGCCCAAGATGACACAAGTGTTGGTTGGCACTGGGCGAGTGATGCCGAGCGCCAACACTGATGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCCACCACAATGCCAAAACGCTCAAAGAACGGGTTCCCAGCAGTCTGGCACCGCTCCTTCATGACTAGTCCAAGCAAAGGCATGACCATGGAGGCGGGCAATAGGCCACTGTTTGCGGACATTCGGAACTGGAAGACGGCGCTTCCCTGCTGTAGCAGCCGGTCCCACTTGTATTGGACGTAGAAGGCCTGCACTGCGAGGGCCACGGCGCACCACGAGTATCGGTCCCATACGGTTGCGTGGATGCTCAGCACCACTGCAAACACTACTGCCGCCTCTGCCAGCACCGATCCACTCAGCGGAGCCCCAG s panTro1.chr11_random 46298820 1517 - 53199993 CCAGGAGGGGCATGCC--TGCAGATGGACTCTAGAGGATCCAAGCATAACTGTAGTTTAGGTCCACTCCACTGTCAAAGATTAAGATCAGAGCTACAGAAATGATCTGCGCAAATATAGATGTCATGGTCCCCTCAAAAGTCTTTTTGGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTACCGAAGATGGAGGCCACAGTATCACCCACACCCACAGCCAGGACACCGGCATAGGGGACGAGGGCCCTGGCTCCTCCCAGGCTACCCTTCTGTGTGCAGGGTCTGGGGATCAGCCAGATGGGAAGAGACATGCCCAGGAGCAGGTAGATGTGTGTCAGAATGAGTGGTCCACTGTCTCGTTCATCCAGAAAAAGGGACAGGAAGCTCCGTAGAGTGTGACCCAAGGGCTTGATGCGGAAGTAGCGCACATACTCCAGGAAGATGAAGACCGCCAGGCATACAGTGGCGGCTACATAGAGCAGTGGCCGGTCAAAGATGATACCTGGGATGTAGGTGGCTACCACAATGAGGTGGAAATACTTTCGGGCGATGGTGGGGGCCTGGTGCTTCTTGGACTCGGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCAAGGTGGCCAGCAGAGACCAATAGGCTAGGAGGTAGATGCGGGTGTCTGTCTGGAAGAGAAACTGAAGAAGCCAGAGCAGGGGATTCCTGCGGATGAGCCGGTGCAGCCAGGGTAGGACCACACCAAGGCTCAGCACACAGGTCATGAGGTGGAAGAAGATGGAGGAGGCCCAGGTGCCTGAGTCCATGAAGACGAACAGAGTGCTGAAGAAGATGCCCATGAGTACCATCCCTACTACCACCACCAGCAGGAAGAAGTCCACTGGGTC---CCCCTGACTTTCCACCAGTGTCAGAGAGCGCTTGATGAGCTGGTTGAGGACAAAGCTAATGCCACCCAATACCAGCAGTGCCTCGCCAGGGGTGAAGCAACGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAAGATCAGAATGCCTTCCAGGACTTCGATCACCTCCCCCACGCTC-CCTAGAGCTTCATGATATAAATGATAACACCTCCAGCCAAGCCCAAGATGACACAAGTGTTGGTTGGCACTGGGCGAGTGATGCCGAGCGCCAACACTGATGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCCACCACAATGCCAAAACGCTCAAAGAACGGGTTCCCAGCAGTCTGGCACCGCTCCTTCATGACTAGTCCAAGCAAAGGCATGACCATGGAGGCGGGCAATAGGCCACTGTTTGCGGACATTCGGAACTGGAAGACGGCGCTTCCCTGCTGTAGCAGCCGGTCCCACTTGTATTGGACGTAGAAGGCCTGCACTGCGAGGGCCACGGCGCACCACGAGTATCGGTCCCATACGGTTGCGTGGATGCTCAGCACCACTGCAAACACTACTGCCGCCTCTGCCAGCACCGATCCACTCAGCGGAGCCCCAG s mm5.chr2 30244517 1509 + 181686250 CCAGAAGGGATA---CAGTGCTGATGGACCCCAAA--ATCCAGGCATAACTGTAGTTCAGGTCTACTCCACTGTCAAAGATTAAGATTAGAGCTACAGAGATGATTTGTGCAAATATAGATGTCATAGTCCCCTCGAAGGTTTTCTTAGTTCCAGGCCAGCGGATCTCTCCCATGGTGCTGCCAAATATGGAGGCCACAGTATCACCCACACCCACAGCCAAGACCCCAGCATAGGGGACCAGGGCTCTTGCTCCTTCCAGGCTGTCCTTCTGTGTACAGGGTCTGGGGATCAGCCAAATAGGAAGAGACATGCCCAGAAGCAGGTAGATGTGTGTTAGGATAAGGGGTCCACTGTCTCGTTCATCCAGGAAGAGGGACAGAAGGCTTCGCAGAGTGTGACCCAAGGGCTTTATTCGGAAATAGCGCACATACTCCAGGAAGATGAAGACTGCCAGGCACACAGTGGCGGCCACATACAGCAGTGGCCGGTCAAAGATGATGCCCGGGATATAAGTGGCTACCACAATGAAGTGGAAATACTTTCTTGTAATGGTAGGCGCCCTGTGCTTCTTGGACTCAGAAGACGACCGCTTAGCATTCTGGTACAGCACCACCAGGCAGGCCACAGAGGCCAGCAAAGACCAATAGGCAAGGAGGTAGATGCGAGTTTCAGTGTAGAAGAGGAACTGAAGAAGCCAAAGCAGGGGGTTCCTACGAATGAGCCAGTGCAGCCAGGGCAGAACCACACCAAGGCCCAGCACACAGGTCATGAGGTGGAAGAAGATGGAAGAGGCCCAGGTGCCTGAATCCATGAAGACAAAGAGGGTGCTGAAAAAGACACCCATGAGCACCATCCCTACCACCACCACCAACAGGAAGAAGTCCACTGGGTC---CCCCTGGCTTTCA------GTCAGAGAGCGCTTGATGAGTTGGTTAAGGACGAAGCTAATGCCACCCAATACCAGCAGTGCCTCCCCAGGAGTGAAGCATCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACAAATATTAGCAGGACTTCCAGGACCTCGATCACCTCGCCTACACTGAGCGAGTGCCTCATAATATAAATGATAACGCCTCCAGCCAAACCAGAGATGGCACAAGTATTGGTGGGCACCGGGCGAGTAATGCCCAGTGCCAACACGGAGGAGAAGAGGGCCACTGCCATGCCAGTAGCTGCAACCACAATGCCGAAGCGCTCGAAGTATGGGTTCCCTGCAGTCTGGCAGCGCTCCTTCATGACTAGCCCAAGCAAAGGCATGACCATGGAGGCCGGCAGTAAGCCGCTGTTCGCGGACATCCGGAACTGGAAAACGGCATTGCCCTGCTGGAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACCGCGAGGGCCACCGCGCACCAGGAGTATCGGTCCCACACTGCAGCGTGGATGCTCAACACCACGGCGAACACCACTGCAGCCTCCGCCAGCACCGACCCGCTCAGCGCAGCCCCAG s rn3.chr3 9330175 1509 + 170969371 CCAGAAGCGACA---CAGTGCTGATGGACCCCAAA--ATCCAAGCATAGCTGTAGTTCAGGTCTACTCCACTGTCAAAGATTAGGATCAGAGCCACAGAGATGATTTGTGCAAATATAGATGTCATAGTTCCCTCGAATGTTTTCTTAGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTGCCAAATATGGAGGCCACAGTATCGCCCACACCCACAGCCAGGACCCCAGCATAGGGGACCAGGGCTCTTGCTCCTCCGAGGCTGCCCTTCTGTGCACAGGGTCTGGGGATCAGCCAAATGGGAAGAGACATGCCCAGAAGCAGGTAGATGTGCGTCAGGATGAGGGGCCCGCTGTCCCGTTCATCCAGGAAGAGGGACAGAAGGCTGCGCAGAGTGTGACCCAGGGGCTTGATTCTGAAATAGCGCACATACTCCAGGAAGATGAAGACGGCCAGACACACGGTGGCGGCCACATACAGCAGTGGCCGGTCAAAGATGATACCGGGGATGTAAGTGGCCACCACAATGAAGTGGAAATACTTTCTGGTAATGGTAGGAGCCTTGTGCTTCTTGGACTCAGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCATGGTGGCCAGCAAGGACCAATAGGCTAGGAGGTAGATGCGAGTTTCTGTGTAGAAGAGGAACTGAAGAAGCCAGAGCAGGGGGTTCCTACGAATGAGCCAGTGCAGCCAGGGCAGAACCACACCAAGGCCCAGCACACAGGTCATGAGGTGGAAGAAGATAGAAGAGGCCCAGGTGCCCGAATCCATGAAGACAAAGAGGGTGCTGAAAAAGACACCCATGAGCACCATCCCCACCACCACCACCAACAGGAAGAAGTCCACTGGGTC---CCCCTGGCTTTCA------GTCAGAGAGCGCTTGATGAGCTGGTTGAGGACGAAGCTAATGCCACCCAATACCAGCAGTGCCTCCCCAGGAGTGAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAATATTAGCAGGACTTCCAGGACCTCGATCACCTCGCCCACACTGAGCGAGTGCTTCATAATATAAATGATAATACCTCCGGCCAAACCCGAGATGGCACAAGTATTGGTGGGCACCGGGCGAGTAATGCCCAGTGCCAACACCGAGGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCAACCACAATGCCGAAGCGCTCGAAGTATGGGTTCCCTGCAGTCAGGCAGCGCTCCTTCATGACCAGCCCAAGCAAAGGCATGACCATGGAGGCCGGTAGTAAGCCACTGTTCGCGGACATTCGGAACTGGAAAACAGCATTCCCCTGCTGGAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACTGCTAAGGCCACGGCGCACCAGGAGTATCGGTCCCACACTGCAGCGTGGATGCTCAGCACCACTGCGAACACCACTGCAGCCTCCGCCAGCACTGACCCGCTCAGCGCAAACCCAG s canFam1.chr9 6365377 1515 - 53642819 CTAGGAGGGACA---CGATGCTGATAGAGCCCAAA--ATCCAAACATAACTGTAGTTTAGGTCCACTCCACTATCAAAGATTAAGATCAGAGCTACAGAAATGATCTGGGCAAATATAGAGGTCATGGTCCCCTCAAAGGTCTTTTTGGTTCCAGGCCAGTGGATTTCCCCCATTGTGCTGCCAAAAATGGAGGCCACAGTGTCCCCCACACCCACAGACAGGACTCCTGCATAAGGGACTAGGGCTCTTGCTCCCCCCAAGTTGCCCTTCTGTGTGCAGGGCCTGGGAACCAGCCAAATTGGAAGAGACATGCCCAAGAGCAGGTAGATATGTGTCAGGATGAGTGGTCCACTGTCTCGTTCATCTAAGAAAAGGGACAGGAGGCTCCTCAGAGTGTGGCCCAGGGGCTTGATGCGGAAATAGCGCACATATTCTAGGAAGATAAAGACTGTTAGGCATATGGTGGCAGCTACATAGAGCAGTGTCCGGTCAAGGATGATACCGGGGATGTAGGTGGCCACCACAATGAAGTGGAAATACTTTCGGGCAATGGTGGGGGCCTGGTGCTTCTTAGACTCAGAAGATGACCGCTTGGCATTCTGGTAAAGCACCACCAGGCAGGCTAAGGTGGCCAGCAGAGACCAGTAGACCAGGAGGTAGATGCGGGTCTCTTTCTGGAAGAGGAATTGAAGAAGCCAGAGCAGGGGGTTCTTGCGGATAAGCCGGTGCAGCCAGGGAAGGACCACGCCAAGGCCCAGCACACAAGTCATAAGGTGGAAGAAGATGGAGGAAGCCCAGGTACCTGAGTCCATGAAGACAAAGAGTGTGCTGAAGAAGACGCCCATAAGCACCATCCCTACTACCACCACCAGCAGGAAGAAATCCACTGGGTC---GCCCTGGCTCTCCACCACAGTCAGAGAACGCTTGATGAGCTGGTTGAGCATGAAGCTGATGCCACCTAATACAAGCAGTGCCTCCCCAGGGGTAAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGGTAGACGAAGATCAGCAGGACCTCCAGGACCTCGATCACCTCGCCCACACTCAGTGAGTGCTTCATGATATAAATGATGACACCTCCAGCCAAGCCTGAGATGACACAAGTGTTGGTGGGCACTGGGCGAGTGATGCCCAGTGCCAGTACCGACGAGAAGAGGGCCACTGCCATCCCAGTGGCTGCCACCACAATTCCAAAGCGCTCAAAATATGGGTTCCCCATGGACTGGCAGCGCTCCTTCATGACCAGTCCGAACAAAGGCATGACCATTGATGCGGGCAGCAGGCCACTGTTTGCGGACATGCGGAACTGGAAGACAGCGCTTCCCTGCTGCAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACTGCGAGAGCCACGGCGCACCACGAGTATCGGTCCCACACGGCTGCGTGGATGCTCAGCACCACTGCGAACACTACTGCTGCCTCCGCCAGCACTGACCCACTCAGCGGAGCCCCGG s galGal2.chr17 5207321 1512 - 10632206 CCAAAAGAGAAA---CTAAGCTCACAGACACCAGA--ATCCAGGCATAGCTGGAGTTCAGGTTCACGCTGCTGTCAAAGATCAGAATAAGAGCCACAGCAATGATCTGAGCAAAAATTGCTGTCATTGTCCCTTCAAAGGTCTTCTTTGTGCCCGGCCATTTGATTTCCCCCATGGTACTGCCAAAAACAGAGGCCATGGTGTCTCCTACCCCTACTGCAAGCACCCCAGCATAGGGCACCAGTGCTCCTGCCCCAGACAAGGCACCTTTAGGGGCACAGGATCTGGGGAACAACCACACTGGGAGGGACATGCCAAGAAGAAGATAAATGTGAGTCAAGATTAGAGGCCCACTGTCTCTTTCATCCAAGAAGAGAGACAGCAAATAGCGAAGAGTTTGGCCAAACGGTTTGATCCTGAAGTACCGAATGTACTCTAAGAATATGAACACTGCCAGACACAGGACTGCAGCAACATGGAGAAGCTGGCGGTCATAAATTAGTCCAGGAACATAAGTTGCTACAACAATGAAATGGAAATACTTCCTGGTTATGGTTGAGGCCTGGTGTTTTTTAGATTCG---GACGATCTCTTGGCATTCTGGTAGAAAACTATGCCACACGCTGAAGCAGCCAATAAAGTCCAATATATGAGAAGGTAAACCCTCGTCTGTGTCTGAAACAGAAACTGGAGCAGCCAAAACAAAGGGTTCCTCCGGATCAGTCGGTAAAGCCAAGGCATGATGACCCCTAAGCCTAGCACTGCTGTCATCATGTGGAAAAACATGGAGGAGATCCACGTACCCGAATCCATGAAAATGAAGAGAACAGTGAAAAAAAGCCCAAGGATAACAACTCCAATAACTGCCACCAGAAGGAAGAAGTCTATGGGTTC---ACCTCTGCCCTCGATTACATTCAGTGAGCGTTTAATGAGCTGATTGAGAACAAAACTTATACCTCCGAGAACTAGCAATGCTTCTCCAGGAGTAAAACACCGAGGCAGCAGGTAGAGCAAGATCATACTGAGGTAGACAAAAATTAGCAGCACTTCTAGGACCTCTATCACTTCTGAAACAGTCAAAGAGTGCTTCATGGTATAGATAATTATACTGCCAGCAACACCACTGAGTATGCAGGTGTTGGTGGGCACAGGTTTTGTGATGCCAACAGCAATTACAGACAAAAATAGAGCAACCAACATGCCAGTGGAAGCTACAACTATGCCAAAGCGTTCAAAGTACACGATACCAGCAGCCTTGCACCTCTCCTTCATTGCTATCCCCAGCAAGGGGATGACCATGCTGGCAGGCAGGAGCCCACTGTTCGCTGTGGTGCGGAACTGGAACACAGCCCCCCCCTGCTGCAGCAGGCGGTCCCATTTAAACTGGACATAGAAAGCCTGGATGGCAAGAGCTACAGCACACCAGGAGTAGCGGTCCCACACCACTGCATGCACGCACAGAACGATGCTGAAGACGATCAGGGATTCCACCAGCACTGGTTTGTTTAACATGGTTCCAG s fr1.chrUn 290357796 1512 - 349519338 CTAGCATTGCCA---CCAGAGTGATAGAACCAACA--ATCCAGGAGTAGCTGGAGTTCAGATTGATGCCAGTATCAAAGATTAGAAAGATGGCCACAGCAATAATCTGTGCAAACACAGATGTTGCAGTCCCCTCAATGGTTTTCTTAGTACCGGGCCAACGAATCTCTCCCATGGTGCTGCCAAACACAGATGCCACAGTATCTCCTACCCCGACAGCCAGGACACCTGCATATGGTATCAGCCCACCGGCACCAGGAAGTATTCCTTTTGGGGCACATGGTCCAGGGAACAGCCATATGGGAAGAGACATGCCCAAAAGGAGGTAAATGTGGGTCAGGATAAGAGGCCCAGAGTCCCGCTCATCCAGGAACAATGTAAGAACCTGTCTGAGCACCTGACCCAGTGGCCTGATCCGAAAGTAGCGCACGTACTCCAGGAACAAAAAGACTGCCAAGCAGCCAACAGAGGCCACATGGAGCAGGTGCCGGTCGTATATGAGACCTGGAACATAGGTGGCCACCACAATTAGATGGAAGTACTTCCGGACTACAGTCGAGGCTTGGTGTTTCTTGGACCCA---GACTGACGTTGATAGTTCTGGTGTAACACAACACAGGTGGCCAGGACCACCAGAAACACCCAGTATGCCAGCAGAGAGAGCCTTCTGTCAGTGAATGTGACAAAGTCCAGTAGCCACATGATGGGATGCCTGCCGATGAACAGGGATAGCCATGGCAACAGAATTCCCAGACTGAGAACGGCTGTCATGATGTGGAAAAAAACAGATGACACCCAGGTCTCTGATTCCATGAAGCAAAACAGCAGAGCAAAGAACACGCCCAGCAACAACGAGCCTACTACCACGACCGGCAGGAAATAATTTATTGGATC---GCCTTTGACCTCTGTCAAGTTCAGTGAGCGCTTGATAAGCTGGTTGACAATGAAACTGATTCCACCGATGATGAGAAGGGCTTCTCCGGGTGTGAAGCAGCGAGGCAGCAGGAAAAGCACGATCAGGCTGAGATAGACGAAGATCAACAACACCTCTAAGACTTCGATGACCTCAGACACCGTTAACGTCTGTTTCGTCATGTACAGAATTGCACTGGCGGCCATGCCTGCAATCACACAAGTGTTGGTGGGTACAGGTCTTGTAATGCCTAAGGCGATCAGGGAGAGGAACAGTGCCAGCATCATGCCGGTGATGGTGATGACCATGGAGAAGCGCTCGAGGTAAACGTTCCCTGATTCAGAGCACCTTAGTCTCAGCACCAAGCCCAGCAAAGGCATCACCATGGAGGCTGGGACGATGCCACTGTTTGCTGCTGGACGGAACTGGAACACGGCACCCCCCGACTTGAGCAAACGATCCCATTTGTGCTGAACGTAGAAAGCCTGGATGAAGAGTGCAATGCTGCACCAGGAATGCTGGTTCCACAGCACCATGTGGACCCACCCCACAATGGCAAAAACTATAGCGGACTCTACAAAGACTGGATTAATCTCCATTGCCACTG s danRer1.chr21 12648479 1515 - 13488766 CCAACATGGCCA---CCATAGAGATGGATCCCACC--ACCCACGAGTAGCTGGCGTTCAGGTTAATACTGCTGTCGGCGATGAGGAAAACCACCACAGCGATAATCTGAGCGAACACAGAGGACGCCGTGCCCTCAAATGTCTTCTTAGTCCCAGGCCAGCGGATTTCACCCACGTTGCTGCCGAAAACGGATGCCACTGTGTCCCCGACCCCTACAGCAAGGACTCCAGCATAGGGTACTAGCCCACTAGCGCCCCCTAGGCCTCCTTTTGGGGTGCACATCCCAGGTGTCAACCACAGTGGAAGAGAAACGCCAAGAAGAAGATAAATATGAGTGAGAATAAGTGGTCCTGAATCTCTCTCATCAAGGAATAAGGTGAGAAGACGTCGAAGCGGAGCCCCGAATGGTCGAATGCGAAAATAGCGGACATATTCGAGAAACAAAAATGCAGAGAGGCAAACAACCGCAGACAAATGCAGCAAAGGACGATCCAGAGCGAGTCCGGGAGCGAAGGTTAAAACGGTGAGCAGGTGGAAATACTTCCGCACTGTCGTTGATGCTTGATGCTTCTTGCTGCCTGCAGAT---CGATGACTATTTTGATGCATCACAACGGCAACTGCTAGAAGCGCCAAAGCGGCCCAAAACCCAATGAGCCAAAGTCGAGTGTTTGATTCAGTGATGAAATGCATCAACCAAGTGATTGGATGGTGCTGCGTGAGTAGAGATAGCCAAGGAACCAATAACCCCAATCCCAAAACCGCAGTCATGGTATGGAAGAAGAGCGACGCTGACCAGGTTTCAGATTCCATGAATATAAAAAGCACGGCGAAGAATATTCCCAACAGCACTAACCCTAAAACAGCTACCGGGAGGAAATACGGAAGCGGGTCTGAGTTTGCATTTCCAGACGAAGCCAGAGAGCGCTTAATTAGCTGGTTGATGATAAAACTAATCCCGCCAAGGATCAGAAGGGCTTCGCCGGGGGTGAAGCAACGTGGAAGGAGGTACAGCAGGATTAAACTTAGATACACAAAAATCAGAAGCACCTCCAAGACTTCGATGACCTCAGACACTGTTAGTGTTTGCTTCACGGTGTACAGAATAGCACTACTAGCAATTCCGGCGATAACACAAGTGTTTGTTGGCACCGGCCGCGTGATTCCCAATGCGATGAGCGAGAGGAATAGAGCCAACATCATTCCGATTACTGTGATGACCATTGCGAATCGCTCCATGTAGACGTTTCCCACAGCGAGGCAGCGGCCTCGTAGGGTGAGTCCCAGTAGTGGCAGCACCATACTGGCTGGCAGGACGCCGCTGTTGGCTGAAGGACGAAACTGGAAGACGGCGGCACCAGAGCGAATCAGACGATCCCATTTGTGCTGCACATAAAAAGCCTGGACGGCCAATGCCATGCAGCACCAGGACAGCTGATTCCACACGGCCATGTGTACGGAAACCACCATGGCGAACACCACCGCAGATTCAACCAGCACTGGATCCATCTGCATGACTGCAG a score=491.0 s hg17.chr9 128789102 2 + 138429268 GC s panTro1.chr11_random 46300337 2 - 53199993 GC s mm5.chr2 30246026 2 + 181686250 AC s rn3.chr3 9331684 2 + 170969371 AC s canFam1.chr9 6366892 2 - 53642819 GG s galGal2.chr17 5208833 2 - 10632206 TC s fr1.chrUn 290359308 2 - 349519338 GC a score=-383.0 s hg17.chr9 128789104 1 + 138429268 C s panTro1.chr11_random 46300339 1 - 53199993 C s mm5.chr2 30246028 1 + 181686250 T s rn3.chr3 9331686 1 + 170969371 T s canFam1.chr9 6366894 1 - 53642819 A s galGal2.chr17 5208835 1 - 10632206 C a score=46199.0 s hg17.chr9 128789105 31 + 138429268 CCGGGGCCGGAGATGGGCACTCTCGGGTCAT s panTro1.chr11_random 46300340 31 - 53199993 CCGGGGCCGGAGATGGGCACTCTCGGGTCAT s mm5.chr2 30246029 25 + 181686250 CCTGG------GGAGGGCACTGTCGGGTCAT s rn3.chr3 9331687 31 + 170969371 CCGGGGCTTGGGGAGGGCACTGTCGGGTCAT s canFam1.chr9 6366895 25 - 53642819 CCGGG------GGAGCGTGCTCTCGGGTCAT a score=145262.0 s hg17.chr9 128882427 96 + 138429268 ATGGCGTTCCGGAGGGCCGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG s panTro1.chr11_random 46393737 96 - 53199993 ATGGCGTTCCGGAGGGCTGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG s mm5.chr2 30327714 96 + 181686250 ATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAGTGTTCCTGTACACAACTTTTGGTCAG s rn3.chr3 9412966 96 + 170969371 ATGGCATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATACCAGTGTTCCTGTACACGACTTTTGGTCAG s canFam1.chr9 6452102 96 - 53642819 ATGGCATTCCGGAGGACTGAGGGCATGTCCATGATCCAGGCACTGGCCATGACGGTGGCCGAGATCCCTGTGTTCCTGTATACAACGTTTGGGCAG s fr1.chrUn 120365676 96 + 349519338 ATGTCACTCAGACAAGCGGAAGGGATGTCCATTGCCCAGGCTTTGGCAATGACGGTAGCAGAGATCCCAGTGTTCCTTTATTCCACGTTTGGACAG s danRer1.chrNA 88880074 96 + 390413307 ATGTCATTCAGAAGTGCAGAGGGCGTGTCCATCATGCAGGCCTTGGCCATGACTGTGGCTGAGATACCTGTGTTTCTCTATTCCACCTTTGGGCAG a score=359580.0 s hg17.chr9 128937229 216 + 138429268 TCAGAGCTTGGCCCGG---GGGTGGCTCTGCAGCAGGGCACGCATGTCCAGGAGCGCCTTCTCCAGGTAATGCGCCAGGCGGGCGGCGTTGGTCTCCGCGCAGCTGTTGTAGGCCGACAGGGAGAAGTTGATGTGGGCCTCCATGGGGTTATAGCAGACACCGTAGCCGTCGGGGACCACGGGCCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC s panTro1.chr11 113780157 216 + 123086034 TCAGAGCTTGGCCCGG---GGGTGGCTCTGCAGCAGGGCACGCATGTCCAGGAGCGCCTTCTCCAGGTAATGCGCCAGGCGGGCGGCGTTGGTCTCTGCGCAGCTGTTGTAGGCCGACAGGGAGAAGTTGATGTGGGCCTCCATGGGGTTATAGCAGACACCGTAGCCGTCGGGGACCACGGGCCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC s mm5.chr2 30362600 216 + 181686250 TCAGAGCTTGGCCCTG---GGGTGGTTCTGGAGTAGGGTGCGCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATGCGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGGAGAAGTTGATATGGGCCTCCATGGGGTTGTAGCAGATGCCATAACCATCTGGGACCACAGGTCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC s rn3.chr3 9448511 216 + 170969371 TCAGAGCTTGGCCCTG---GGGTGGTTCTGGAGTAAGGTGCGCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATGCGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGGAAAAGTTGATATGGGCCTCCATGGGATTGTAGCAGATGCCGTAACCGTCTGGGACCACAGGTCCGAAGGACATGACACAGTCTGTCTTGGCAGGGAC s canFam1.chr9 6500360 216 - 53642819 TCACAGCTTGGCCCGA---GGGTGACTCTGCAGCAGAGCGCGCATGTCCAGGAGTGCCTTCTCCAGGTAGTGCGCCAGGCGGGCTGCATTGGTCTCGGCACAGCTGTTGTAGGCTGACACAGAGAAGTTGATGTGCGTCTCCATGGGGTTGTAGCACACGCCATAGCCGTCTGGGACCACGGGCCCAAAGAACATGACGCAATCTGTCTTGGCAGGGAC s galGal2.chr17 5301443 216 - 10632206 TTACAGTTTGGATTTG---GGGGTAGATTGGAGCAAGCTTCTCATGTCTAGCAGTGCTTTCTCAAGATAATGTGCCATGCGAGCTGCATTTGTGTCAGCACAGCTGTTGAATGCTGAAATGGCAAAGTTGATGTGTTCATCCATAGGGTTGTAACAGATTCCATAGCCATCTGGAACCACGGGACCAAAACACATCACACAGTCTGTCTTTGCTGGGAC s fr1.chrUn 47430687 219 + 349519338 TCACTGCTGGGCCGTGGCTGCGGCATCTTCCAGGAGAGCTCTCATGTCCAACAGGGCGCCCTCTACAGCCTGGGCGAAGCGAGCGGCGTTGGTCTCCTCACAGCTGTTGAAGGCCGTGATGGCCACGTTGATGTGCTCCTCCATGGGATTGTAACACACGCCGTAACCGTCTGGCACCATCGGACCAAAGCACATCACGCAGTCTGTCTTCGAGCCGAC s danRer1.chr8 1065541 216 - 36410523 TTAAAGCTTGGCTCTG---GGTGTCTGCTCCAGCAGGGTCCTCATGTCCAGCAGAGCGTCCTCCAGACCCTGAGCCAGACGGACAGCATTTGTGTCCTGGCAGCTGTTGAACGCAGATACTGCAAAGTTAATGTGGGTATCCATGGGATTGTAGCATACGCCATAACCATCAGGCACCACCGGCCCAAAGCACATCACACAGTCAGTTTTAGCTGGCAC a score=134850.0 s hg17.chrX 122745047 138 + 154824264 ATGACTTTTAACAGTTTTGAAGGATCTAAAAC----TTGTGTACCTGCAGACATCAATAAGGAAGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTCCTGTTTCAGCATCAACA- s panTro1.chrX 126858618 138 + 160174553 ATGACTTTTAACAGTTTTGAAGGATCTAAAAC----TTGTGTACCTGCAGACATCAATAAGGAAGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTCCTGTTTCAGCATCAACA- s mm5.chrX 34442683 138 + 160634946 ATGACTTTTAACAGTTTTGAAGGAACTAGAAC----TTTTGTACTTGCAGACACCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGTAGTAGTCCTGTTTCAGCATCAACA- s rn3.chrX 157748736 138 - 160775580 ATGACTTTTAACAGTTTTGAAGGATCTAGAAC----TGTTGTACCTGCAGACACCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGCAGCAGTCCTGTTTCAGCATCAACA- s canFam1.chrX 98422419 138 + 126913094 ATGACTTTTAACAGTTTTGAAGGAGCTAAAAC----TTGTGTACCTGCAGGCATCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTAGCAGTCCTGTTTCAGCATCAACG- s galGal2.chr4 75226910 138 - 90634903 ATGACGTGTAATGGCCCAGATAGCTCTGAATC----TGGTGCCACTCCAGCCACTGACGGTGACCAGGAGTGGACACAGGAACACTACCGACTAGGAACCTTTGTGGAGTTTCCCCATGATTGTCCAGTTTCAGCATCAGCG- s danRer1.chr14 14605069 142 - 34612130 TTTAGTTACTACAAATATGGCACACTCAACTCATAATGGCGAATTGGAATCTGACAATGTGGCAGCTGATTGGTCAGTCATGAAGAATCGGGTGAACTCTTTTCAACGTTTTCCATATTCTGAAGACATTTCAGCA-CAGCGG a score=158991.0 s hg17.chrX 122745185 115 + 154824264 CTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA s panTro1.chrX 126858756 115 + 160174553 CTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA s mm5.chrX 34442821 115 + 160634946 TTGGCGCGAGCTGGGTTTCTTTATACCGGTGAAGGAGACACCGTGCAATGTTTCAGTTGTCATGCGGCAATAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGA s rn3.chrX 157748874 115 - 160775580 TTGGCGCGAGCGGGGTTTCTCTACACTGGTGAAGGAGACACCGTGCAGTGTTTCAGTTGTCACGCGGCAGTAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGA s canFam1.chrX 98422557 115 + 126913094 TTAGCACGAGCTGGTTTTCTGTATACTGGTGAAGGAGATACTGTGCGGTGCTTTAGTTGTCATGCATCAATAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA s galGal2.chr4 75227048 115 - 90634903 CTAGCTCGAGCTGGCTTTGTTTATACTGGAGAAGGTGATAAAGTCAAGTGCTTCAGTTGCCATGTAACTGTTGAAGGATGGGAGCCTGGGGATTCTGCAATTGACAGACACAAAA s fr1.chrUn 143073633 115 - 349519338 CTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGC s danRer1.chr14 14605211 115 - 34612130 CTGGCCCGAGCGGGCTTTTACTTCACAGGCGAGGGGGACAGGGTGCAATGTTTCAGCTGCAGTGCCACTGTGCAGAACTGGAACAGAGGTGACACCCCATTGGAGAGACATCAAC a score=509291.0 s hg17.chrX 122745300 448 + 154824264 AAGTATCCCCAAATTGCAGATTTATCAACGGCT---TTTATCTTGAAAATAGTGCCACGCAGTCTACAAATTCTGGTATCCAGAATGGTCAGTACAAAGTTGAAAACTATCTGGGAAGCAGAGAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAA s panTro1.chrX 126858871 448 + 160174553 AAGTATCCCCAAATTGCAGATTTATCAACGGCT---TTTATCTAGAAAATAGTGCCACGCAGTCTACAAATTCTGGTATCCAGAATGGTCAGTACAAAGTTGAAAACTATCTGGGAAGCAGAAAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAA s mm5.chrX 34442936 448 + 160634946 GAATATCCCCAAATTGCAGATTTATCAATGGTT---TTTATTTTGAAAATGGTGCTGCACAGTCTACAAATCCTGGTATCCAAAATGGCCAGTACAAATCTGAAAACTGTGTGGGAAATAGAAAT---------CCTTTTGCCCCTGACAGGCCACCTGAGACTCATGCTGATTATCTCTTGAGAACTGGACAGGTTGTAGATATTTCAGACACCATATACCCGAGGAACCCTGCCATGTGTAGTGAAGAAGCCAGATTGAAGTCATTTCAGAACTGGCCGGACTATGCTCATTTAACCCCCAGAGAGTTAGCTAGTGCTGGCCTCTACTACACAGGGGCTGATGATCAAGTGCAATGCTTTTGTTGTGGGGGAAAACTGAAAAATTGGGAACCCTGTGATCGTGCCTGGTCAGAACACAGGAGACACTTTCCCAATTGCTTTTTTGTTTTGGGCCGGAA s rn3.chrX 157748989 448 - 160775580 GAATATCCCCAAATTGCAGATTTATCAATGGTT---TTTATTTTGAAAACGGTGCCACACAGTCTACATCTCCTGGCATCCAAAATGGCCAGTACAAATCTGAAAACTGTGTGGGAAACAGAAAT---------CATTTTGCTCTTGACAGGCCGTCGGAGACTCATGCAGATTATCTCCTGAGAACTGGACAGGTTGTAGATATTTCAGATACCATATACCCGAGGAACCCGGCCATGTGTAGTGAAGAAGCCAGACTGAAGACGTTTCAGAACTGGCCAGACTATGCCCATTTAAGCCCCAGAGAGTTAGCTAGTGCTGGACTCTACTACACGGGGATTGATGATCAAGTGCAATGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCCTGTGACCGTGCCTGGTCAGAGCACAGGAGACACTTTCCCAACTGCTTCTTCGTTTTGGGCCGGAA s canFam1.chrX 98422672 448 + 126913094 AAGTATCCCCAAATTGCAGATTTATCAATGGCT---TTTATTTTGAAAACACTGCTGCACAACCTACAAATCCAGGTATCCAAAATGGTCAATATAATGCAGAAAACTATCTGAGAAACAGAGAT---------CATTTTGTTTTAGACAGACCATCTGAGACTCATGCAGATTATCTTTTGAGAACTGGACAGGTCGTAGATATATCAGACACCACATACCCGGAGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAACTCATTTCAGAACTGGCCAGACTATGTCCACTTGACCCCAAGAGAGTTAGCTAGTGCTGGATTCTACTACACAGGTATTGACGATCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCGTGTGATAATGCATGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTCTGGGCCGGAA s galGal2.chr4 75227163 442 - 90634903 ACCTTTCCCCAGATTGCAGATTTATTACTGGGTCTGCTTTTTTGGAAAATAACG------------TACATCCTCTTGTGCAGAGCCACCAGCATAGAACTGAAAAT------GGCTCCAGCAATTTGGCCCTCCCCTCTGCTCTGGAGGACTTGTCTGATGTGGAGGCAGATTACCTGTTGAGAACCAGGCAGGTTGTGGACATGTCCGATACTTTGTATCCTAAAAACCCTGCTATGTGCAGTGAAGAAGCCAGGCTGAAGTCCTTTCACAATTGGCCCCCCTATGGCCTATTGACGCCAAAGGAATTAGCTAGTGCAGGACTCTACTATACAGGTGTTGGTGATCAAGTTGCATGTTTCTGTTGCGGTGGAAAACTGAAAAACTGGGAACCTGGTGATCGAGCTTGGTCTGAGCACAAGAGGCATTTTCCCAAATGCTTTTTTGTCCTGGGTCGGGA s fr1.chrUn 74286897 397 + 349519338 AGGTTTCTCCATTTTGCAAATTTCTCAGTTGTA---TTTATC---GAACCAGTTCCAATC------CGATTCCTGGCA-CCTCACTGACGA--ACGGCTCTGCCTACAATG-AAGAAGCAGAAGA---------TAT--------------------------------GGAATATCGTCTGAGAACAGGACAGGTGGTCGAT------GAGTCCATTTATCCAGTGGTCCCTCATATGAGGAGTGAAGAAAGCCGGCTTCACACCTTTTCTACGTGGCCCTTGACTGCACCAGTGAGCCCGTGCGATCTGGCCCAAGCTGGCCTTTACTACTTAGGGCAGTGTGACCAGGTTCAGTGTTTCTGCTGTGGTGGCACACTGGCTGACTGGGAAATCGGGGATTCCGCCTGGGCAGAACACAGCAAACATTTCCCTTTCTGCTTTTTCATCCTGGGGCACGA s danRer1.chr14 14605326 382 - 34612130 TGGCATCTCCGGACTGCAGGTTCCTCAGCTGTG---CTCATGGTATGAGAAACT------------CTAATTCG---ATCCAGAGTCCTGATTACGATG-------------AAGAGGCCGAGAA---------TAG--------------------------------AGAGTTCCTCCTCCGCACGGGAGAGGTGGTGGAC------GAGTCCATGTATCCTGTTGTACCGCACATGAAGAGTGAAGAAGCGCGACTGAGTACTTTCAACAACTGGCCAGCAGACTCTCCAGTTCGGCCTGAAGACCTGGCAGAAGCAGGGATGTATTACATTGGGATAGACGACAATGTGCAGTGCTTCTGTTGCGGAGGGGGTCTGAGTGGATGGGAGCAAGGCGACGATCCTTGGAGTGAACATGCGAAGTACTACTCAAACTGCTTCTTCTTCTTGGGCCACAA a score=18792.0 s hg17.chrX 122745748 22 + 154824264 TCTT---AATATTCGAAGTGAATCT s panTro1.chrX 126859319 22 + 160174553 TCTT---AATATTCGAAGTGAATCT s mm5.chrX 34443384 22 + 160634946 CGTT---AATGTTCGAAGTGAATCT s rn3.chrX 157749437 22 - 160775580 TGTT---AATGTTCGAAGTGAGTCT s canFam1.chrX 98423120 22 + 126913094 TGTT---AATATTCGAAGTGAATCT s galGal2.chr4 75227605 25 - 90634903 CGTTGGAAATGTTTCAACTGATTCT s fr1.chrUn 74287294 16 + 349519338 TGTTGGCAATAT---------ACCT a score=0.0 s hg17.chrX 122745748 27 + 154824264 TCTTAATATTCGAAGTGAATCTGATGC a score=-3673.0 s hg17.chrX 122745770 5 + 154824264 GATGC s panTro1.chrX 126859341 5 + 160174553 GATGC s mm5.chrX 34443406 2 + 160634946 GG--- s rn3.chrX 157749459 2 - 160775580 GG--- s canFam1.chrX 98423142 5 + 126913094 GATGT s galGal2.chr4 75227630 5 - 90634903 ATCTG a score=43762.0 s hg17.chrX 122745775 54 + 154824264 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAT--CTTCCAAGAA-----ATCCATC s panTro1.chrX 126859346 54 + 160174553 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAT--CTTCCAAGAA-----ATCCATC s mm5.chrX 34443408 54 + 160634946 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAC--TCTCCAAGAA-----ATCCAGC s rn3.chrX 157749461 54 - 160775580 TGTGAGTTCAGATAGGAATTTCCCAAATTCAACAAAT--TCTCCAAGAA-----ATCCAGC s canFam1.chrX 98423147 54 + 126913094 TGCGAGTACTGATAGGAACGTCCCAAATTCAACAAGT--ATTCCAGAAA-----ATCCAGC s galGal2.chr4 75227635 54 - 90634903 TGCTGAGCTTGGGAGAAGCTGTCTAAA--CAACGAACAGCATCCAAGGA-----ATCCATC s danRer1.chr14 14605708 50 - 34612130 TGTGGGC---------AACGTCCCCCTGACAACACCT--AGGCCAAGGGCTAATGTCCACC a score=105732.0 s hg17.chrX 122745829 95 + 154824264 CATGGCAGATTATGAAGCACGGATCTTTACTTTTG-GGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG s panTro1.chrX 126859400 95 + 160174553 CATGGCAGATTATGAAGCACGGATCTTTACTTTTG-GGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG s mm5.chrX 34443462 95 + 160634946 CATGGCAGAATATGAAGCACGGATCGTTACTTTTG-GAACATGGACATCCTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG s rn3.chrX 157749515 95 - 160775580 CATGGCAGAATATGACGCACGGATCGTTACTTTTG-GAACATGGCTATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG s canFam1.chrX 98423201 95 + 126913094 CATGGCAGATTATGAAGCACGGATCGTTACTTTTC-GGATGTGGATGTGTTCAATTAACAAGGAGCAACTTGCAAGAGCTGGATTTTATTCTTTAG s galGal2.chr4 75227689 95 - 90634903 CATGGCAGAATATGAGAGGCGGATACAAACATTTT-TAGCTTGGATATACCCTGTTAACAAGGAACATCTTGCTGAAGCAGGGTTCTACAGCACAG s fr1.chrUn 74287369 95 + 349519338 CATGGGGACATTTGAGGAAAGGCTGAGGAGTTTTGCTGGTGTCAAC-CACCCTCTAAACATAGAGAGGCTTGCGAGAGCTGGCTTCTACAGCAATG s danRer1.chr14 14605759 95 - 34612130 TACAGACACTTTTGAGGGGCGTCTTGATAGCTTCA-AAGGCAGACAGCATCCCATTGACCCTGAGAGATTGGCCAGAGCTGGTTTCTACAGCACAG a score=-8579.0 s hg17.chrX 152648964 14 + 154824264 CTATTCTAGGGCCA s panTro1.chrX 157964696 14 + 160174553 CTATTCTAGGGCCA s mm5.chrX 65413418 14 + 160634946 CTATTCTAGGGCTA s rn3.chrX 159861438 14 + 160775580 CTATTCTAGGGCTA s canFam1.chrX 124765428 14 + 126913094 CTACTCTAGGGCCC s galGal2.chr26 3679526 14 - 4255270 CTACGCTAATGAGT s fr1.chrUn 230132755 14 - 349519338 TTAGACGAATGAGT s danRer1.chr10 12185566 12 + 25436222 -TGGGCGGAGGCA- a score=283274.0 s hg17.chrX 152648978 218 + 154824264 CGGCAGGGTTGATGGGGGAAGTGGCCCCTGAGCTGT-CATTGCCCCCTGCCGCCTCCTTCTCCTTCTTGCCACTGTACTGGCCAATGAACGAACCATCCTCGTTGAACTGAACATCCA---CGCTGCCCCCATAATCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCGTTGAGCGATGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA s panTro1.chrX 157964710 218 + 160174553 CGGCAGGGTTGATGGGGGAGGTGGCCCCTGAGCTGT-CATTGCCCCCTGCCGCCTCCTTCTCCTTCTTGCCACTGTACTGGCCAATGAACGAACCATCCTCGTTGAACTGAACATCCA---CGCTGCCCCCATAATCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCGTTGAGCGATGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA s mm5.chrX 65413432 218 + 160634946 CTGCAGGATTGATAGGAGAGGTAGCCCCTGAACTGT-CATTGCCTCCTGCTGCCTCCTTCTCTTTCTTGCCACTGTACTGGCCGATGAAAGAGCCATCCTCATTGAACTGGACGTCCA---CACTGCCCCCATAATCAGCCAGGCTGTCATCACTGCCTAGGGGTTTGATGTCTCCGTTGAGAGATGGCTGGCT-GCTGCCAAAGGCCTTCTCTTCATTGTCA s rn3.chrX 159861452 218 + 160775580 CTGCAGGATTGATAGGAGAGGTAGCCCCTGAGCTGT-CATTGCCTCCCGCTGCCTCCTTCTCTTTTTTGCCACTGTATTGGCCGATGAAAGAGCCATCCTCATTGAACTGGACATCCA---CACTGCCCCCATAATCAGCCAGACTGTCATCACTGCCTAGGGGTTTGATGTCTCCATTGAGAGATGGCTGGCT-GCTGCCGAAGGCCTTCTCTTCATTGTCA s canFam1.chrX 124765442 218 + 126913094 CGGCAGGGTTGATGGGGGAGGCGGCCCCTGAGCTGT-CGTTGCCGCCTGCTGCCTCCTTCTCCTTCTTGCCGCTGTACTGGCCGATGAAGGAGCCGTCCTCGTTGAACTGCACGTCCA---CGCTGCCCCCGTAGTCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCATTGAGGGACGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA s galGal2.chr26 3679540 218 - 4255270 AGATAGCATTGACTGGGGACGTGGCTTCTGAGCTCT-CGTTGCCTTCCGTTTCCTCCTTGTCCTTTTTCACTGTGTACTGGCCAATGAAGGAGCCGTCCTCGTTGAACTGCCCTTCCC---CACCCTCTCCGTAGTCCACCAAGCTGTCGTCACTCTCCTGTTGCTTTATCGTGCCATCCAGGGAGGTCTGACT-GTTGGGCAGTGGTTTGTTGTCTTCATCG s fr1.chrUn 329627114 209 - 349519338 CGGCAGGGTTGAGGGGGGAGTTGTCCGGTACGCCGTGGAACGGCTCCGGCC-------CCTCGCTGTGGCGGCTGAACTGGCTGGCCAGGGACTCGTCCATGTTGAGCTCCGTGGTTACGGCGCTGCTGCCGTTGAAGTCCAGGTTGTCCTCGCTGCACA---GCTTGCTGTCCTCGCCCAGCGAAGGCTGGCTGGCTGT----GCGCTTCTCTTCGAGGTCA s danRer1.chr10 12185578 200 + 25436222 TGTTGGGGTTGACCGGCGACACGGCGCCAGAGCTGT-CGTGCCCGCGTG---------GATCCCTTCGACCGCTGTACTGCCCGATGAAGGAGCCGTCCTCATTGAACTGGATGTCCA---CGCTGTCCCCGTAATCCGCCAGACTGTCGTTGCTGCT---GCGCTTGCTCTCGCACCC---CGACGGCTGGCT-GATGG---AGCACTTCTCCATATCACTG a score=102002.0 s hg17.chrX 152691446 25 + 154824264 ATGCTCATGGCGTCCACCACTTCCG s mm5.chrX 65450627 25 + 160634946 ATGATCCTGGTGTCTACCACGTCTG s rn3.chrX 159897295 25 + 160775580 ATGCTCCTGGTGTCTACCGTGTCCG s canFam1.chrX 124808548 25 + 126913094 ATGCTCCTGGCATCCACCACCTCGG a score=45779.0 s hg17.chrX 152694029 80 + 154824264 TCAGTGTG---GCTTGGGGGTCGTGTCTAGGCCCTGGGGGTGGGAAGCTGAGGGTGAGGCTGGGGCCCCAGGGCCCCGGGAGA s panTro1.chrX 158011192 80 + 160174553 TCAGTGTG---GCTTGGGGGTCGTGTCTAGGCCCTGGGGGTGGGAAGCTGAGGGTGAGGCTGGGGCCCCAGGGCCCCGGGAGA s mm5.chrX 65453119 80 + 160634946 TCAGACTG---GCTTGCGAGTTGAATCTGGACCCTGGGGATGGGAGGTTGAGGGGGAAATTGGAGCCCCAGGTCCCCGGGAGA s rn3.chrX 159899770 80 + 160775580 TCAGACTG---GCTTGCGAGTTGAATCTGGACCCTGGGGATGGGAAACTGAGGGGGAAACTGGAGCCCCAGGTCCCCGGGAGA s canFam1.chrX 124811065 77 + 126913094 TCAGT------GCTTAAGTGGAGAGTCCAGGCCCTGGGGATGGGACGCCGAGGGGGACGCCGGGGCCCCGGAGCCGCGGGAGA s galGal2.chr26 3294210 66 - 4255270 TCAGGGCG---GCT--------------GCGCCATGGAACTGAAATGCACACCGTGCCCTGGCACCCCCATCACCCCTGGGGA s danRer1.chrNA 128898465 70 + 390413307 CCAGACTGCAAGCACAGGGAGAGTGTCTGGCCCCCAGGGC-----AGCT--------CGCTGGGGCCAGAGAGCCTCTGGTGA a score=18883.0 s hg17.chrX 152694109 35 + 154824264 AGCCTTTGTTCCTGCCCAGGCGGCTGCTGGGCGGG s panTro1.chrX 158011272 35 + 160174553 AGCCTTTGTTCCTGCCCAGGCGGCTGCTGGGCGGG s mm5.chrX 65453199 35 + 160634946 AGACTTTGTTTTTGCTGATGCTGCTGCAGGCCAGG s rn3.chrX 159899850 35 + 160775580 AGACTTTGTTTTTGCTGAAGCTGCTGCAGGCCAGG s canFam1.chrX 124811142 35 + 126913094 AGCCTTTGCTCCTACCCAGGCGGCCGGAGGCCGGA s galGal2.chr26 3294276 30 - 4255270 CATC----CCCCTGTCAGCACTGCT-CGGGGCGGG a score=7409.0 s hg17.chrX 152694144 26 + 154824264 GCCTTTGGGCTTCGGGGCCCAGGACT s panTro1.chrX 158011307 26 + 160174553 GCCTTTGGGCTTCGGGGCCCAGGACT s mm5.chrX 65453234 20 + 160634946 GGCGTCAGAGTT------CCTAGACT s rn3.chrX 159899885 26 + 160775580 GGCTTCAGGTTTCGAGTTCCTAGACT s canFam1.chrX 124811177 26 + 126913094 GGCTTCAGGCTGCAgggcccggggcc s galGal2.chrUn 50576950 22 + 165033910 -GTTCTGAG---CGAGGAACAGCACC a score=24632.0 s hg17.chrX 152694170 31 + 154824264 GGGAGAGGTGGTAGATGCTGGCCCAAGGCCC s panTro1.chrX 158011333 31 + 160174553 GGGAGAGGTGGTAGATGCTGGCCCAAGGCCC s mm5.chrX 65453254 31 + 160634946 CGGGGAGGCTGTAGATGCTAACCCATGGCCC s rn3.chrX 159899911 31 + 160775580 GGGGGAGGCTGTAGATGCTAGCCCATGGCCC s canFam1.chrX 124811203 31 + 126913094 gggggagccggtggacgcgggccccgcgccc s galGal2.chrUn 50576972 31 + 165033910 GGGAGAGGCGGCAGCGGCTGCCCCCGAGCTC s fr1.chrUn 329777075 24 - 349519338 GGACGAGGAGGTGGAGGAAGGATC------- a score=47489.0 s hg17.chrX 152694201 49 + 154824264 TGGCGGACAGAGGTCTTTCCCAAGAGCTCCTTAAACACAGAGTCCATGT s panTro1.chrX 158011364 49 + 160174553 TGGCGGACAGAGGTCTTTCCCAAGAGCTCCTTAAACACAGAGTCCATGT s mm5.chrX 65453285 49 + 160634946 TGGCGGACAGCAGTCTTTCCCAAGAGCTCCTTAAACACAGAATTCATGT s rn3.chrX 159899942 49 + 160775580 TGGCGGACAGCAGCCTTTCCCAAGAGCTCCTTAAACACAGAATCCATGT s canFam1.chrX 124811234 49 + 126913094 tggcgggcggAGGTCTTTCCCAGGAGCTCCTTAAACACGGAATCCATGG s fr1.chrUn 329777109 37 - 349519338 TGGCGTGTG------------AGGAGCTCCTTAAAAACAGAGTCCATGT a score=175616.0 s hg17.chrX 152694250 13 + 154824264 TCTGTGCCACAGC s panTro1.chrX 158011413 13 + 160174553 TCTGTGCCACAGC s mm5.chrX 65453334 13 + 160634946 TCTGTGCCACAGC s rn3.chrX 159899991 13 + 160775580 TCTGCGCCACAGC s canFam1.chrX 124811283 13 + 126913094 TCTGTGCCACAGC