#This is a sample file distributed with Galaxy that is used by some #alignment tools. The maf_pairwise.loc file has this format (white #space characters are TAB characters): # # # #Pairwise (anoGam1,dm2) PAIRWISE_anoGam1_dm2 anoGam1,dm2 anoGam1,dm2 /depot/data2/galaxy/anoGam1/align/dm2/maf/chr2L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr2R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrM.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrU.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrX.maf #Pairwise (canFam1,hg17) PAIRWISE_canFam1_hg17 canFam1,hg17 canFam1,hg17 /depot/data2/galaxy/canFam1/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrX.maf #Pairwise (canFam1,mm6) PAIRWISE_canFam1_mm6 canFam1,mm6 canFam1,mm6 /depot/data2/galaxy/canFam1/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrX.maf #Pairwise (canFam2,canFam2) PAIRWISE_canFam2_canFam2 canFam2,canFam2 canFam2,canFam2 /depot/data2/galaxy/canFam2/align/canFam2/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrX.maf #Pairwise (canFam2,hg17) PAIRWISE_canFam2_hg17 canFam2,hg17 canFam2,hg17 /depot/data2/galaxy/canFam2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrX.maf #Pairwise (canFam2,hg18) PAIRWISE_canFam2_hg18 canFam2,hg18 canFam2,hg18 /depot/data2/galaxy/canFam2/align/hg18/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrX.maf #Pairwise (canFam2,mm6) PAIRWISE_canFam2_mm6 canFam2,mm6 canFam2,mm6 /depot/data2/galaxy/canFam2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrX.maf #Pairwise (canFam2,mm7) PAIRWISE_canFam2_mm7 canFam2,mm7 canFam2,mm7 /depot/data2/galaxy/canFam2/align/mm7/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrX.maf #Pairwise (canFam2,mm8) PAIRWISE_canFam2_mm8 canFam2,mm8 canFam2,mm8 /depot/data2/galaxy/canFam2/align/mm8/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrX.maf #Pairwise (canFam2,rn3) PAIRWISE_canFam2_rn3 canFam2,rn3 canFam2,rn3 /depot/data2/galaxy/canFam2/align/rn3/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrX.maf #Pairwise (canFam2,rn4) PAIRWISE_canFam2_rn4 canFam2,rn4 canFam2,rn4 /depot/data2/galaxy/canFam2/align/rn4/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrX.maf #Pairwise (danRer2,fr1) PAIRWISE_danRer2_fr1 danRer2,fr1 danRer2,fr1 /depot/data2/galaxy/danRer2/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrUn.maf #Pairwise (danRer2,hg17) PAIRWISE_danRer2_hg17 danRer2,hg17 danRer2,hg17 /depot/data2/galaxy/danRer2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrUn.maf #Pairwise (danRer2,mm6) PAIRWISE_danRer2_mm6 danRer2,mm6 danRer2,mm6 /depot/data2/galaxy/danRer2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrUn.maf #Pairwise (danRer2,tetNig1) PAIRWISE_danRer2_tetNig1 danRer2,tetNig1 danRer2,tetNig1 /depot/data2/galaxy/danRer2/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrUn.maf #Pairwise (danRer3,fr1) PAIRWISE_danRer3_fr1 danRer3,fr1 danRer3,fr1 /depot/data2/galaxy/danRer3/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrUn.maf #Pairwise (danRer3,hg18) PAIRWISE_danRer3_hg18 danRer3,hg18 danRer3,hg18 /depot/data2/galaxy/danRer3/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrUn.maf #Pairwise (danRer3,mm7) PAIRWISE_danRer3_mm7 danRer3,mm7 danRer3,mm7 /depot/data2/galaxy/danRer3/align/mm7/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrUn.maf #Pairwise (danRer3,mm8) PAIRWISE_danRer3_mm8 danRer3,mm8 danRer3,mm8 /depot/data2/galaxy/danRer3/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chrM.maf #Pairwise (danRer3,tetNig1) PAIRWISE_danRer3_tetNig1 danRer3,tetNig1 danRer3,tetNig1 /depot/data2/galaxy/danRer3/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrUn.maf #Pairwise (danRer4,fr1) PAIRWISE_danRer4_fr1 danRer4,fr1 danRer4,fr1 /depot/data2/galaxy/danRer4/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrUn_random.maf #Pairwise (danRer4,hg18) PAIRWISE_danRer4_hg18 danRer4,hg18 danRer4,hg18 /depot/data2/galaxy/danRer4/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrUn_random.maf #Pairwise (danRer4,mm8) PAIRWISE_danRer4_mm8 danRer4,mm8 danRer4,mm8 /depot/data2/galaxy/danRer4/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrUn_random.maf #Pairwise (danRer4,rn4) PAIRWISE_danRer4_rn4 danRer4,rn4 danRer4,rn4 /depot/data2/galaxy/danRer4/align/rn4/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrUn_random.maf #Pairwise (danRer4,tetNig1) PAIRWISE_danRer4_tetNig1 danRer4,tetNig1 danRer4,tetNig1 /depot/data2/galaxy/danRer4/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrUn_random.maf