phiX phiX174 phiX=5386 16079 Mycobacterium sp. JLS NC_009077=6048425 symbTher_IAM14863 Symbiobacterium thermophilum IAM 14863 chr=3566135 16070 Yersinia pseudotuberculosis IP 31758 NC_009708=4723306,NC_009705=153140,NC_009704=58679 18883 Mycobacterium tuberculosis H37Ra NC_009525=4419977 nocaJS61 Nocardioides sp. JS614 plasmid_pNOCA01=307814,chr=4985871 12521 Clostridium perfringens SM101 NC_008265=38092,NC_008264=12206,NC_008263=12397,NC_008262=2897393 acidCryp_JF_5 Acidiphilium cryptum JF-5 plasmid_pACRY07=5629,plasmid_pACRY06=8781,plasmid_pACRY05=37155,plasmid_pACRY04=37415,plasmid_pACRY03=88953,plasmid_pACRY02=187422,plasmid_pACRY01=203589,plasmid_pACRY08=4909,chr=3389227 lactLact Lactococcus lactis subsp. lactis Il1403 chr=2365589 13082 Bacillus licheniformis ATCC 14580 NC_006322=4222645 344 Rhizobium leguminosarum bv. viciae 3841 NC_008384=684202,NC_008382=151564,NC_008383=147463,NC_008380=5057142,NC_008381=488135,NC_008379=352782,NC_008378=870021 siliPome_DSS_3 Silicibacter pomeroyi DSS-3 chr=4109442,megaplasmid=491611 paraSp_UWE25 Candidatus Protochlamydia amoebophila UWE25 chr=2414465 geobKaus_HTA426 Geobacillus kaustophilus HTA426 chr=3544776,plasmid_pHTA426=47890 rhizEtli_CFN_42 Rhizobium etli CFN 42 d=371254,plasmid_p42c=250948,plasmid_p42b=184338,plasmid_p42a=194229,plasmid_p42f=642517,plasmid_p42e=505334,chr=4381608 13162 Streptococcus thermophilus LMG 18311 NC_006448=1796846 13163 Streptococcus thermophilus CNRZ1066 NC_006449=1796226 18817 Methylobacterium radiotolerans JCM 2831 NC_010510=586164,NC_010502=27836,NC_010505=6077833,NC_010504=22114,NC_010507=21022,NC_010509=47003,NC_010518=36410,NC_010514=42985,NC_010517=37743 28109 Bartonella tribocorum CIP 105476 NC_010161=2619061,NC_010160=23343 dichNodo_VCS1703A Dichelobacter nodosus VCS1703A chr=1389350 12931 Xanthomonas oryzae pv. oryzae KACC10331 NC_006834=4941439 eschColi_O157H7 Escherichia coli O157:H7 str. Sakai plasmid_pOSAK1=3306,chr=5498450,plasmid_pO157=92721 burk383 Burkholderia sp. 383 chr3=1395069,chr2=3587082,chr1=3694126 15759 Psychrobacter sp. PRwf-1 NC_009524=2978976,NC_009516=13956,NC_009517=2117 15758 Staphylococcus aureus subsp. aureus JH1 NC_009632=2906507,NC_009619=30429 27835 Microcystis aeruginosa NIES-843 NC_010296=5842795 campJeju_81_176 Campylobacter jejuni subsp. jejuni 81-176 chr=1616554,plasmid_pVir=37473,plasmid_pTet=45025 15751 Rhodopseudomonas palustris BisA53 NC_008435=5505494 15750 Rhodopseudomonas palustris BisB18 NC_007925=5513844 15757 Staphylococcus aureus subsp. aureus JH9 NC_009477=30429,NC_009487=2906700 15756 Xanthobacter autotrophicus Py2 NC_009717=316164,NC_009720=5308934 15755 Rhodobacter sphaeroides ATCC 17025 NC_009428=3217726,NC_009429=877879,NC_009433=13873,NC_009432=36198,NC_009431=121962,NC_009430=289489 15754 Rhodobacter sphaeroides ATCC 17029 NC_009050=1219053,NC_009040=122606,NC_009049=3147721 13603 Ralstonia eutropha H16 NC_008314=2912490,NC_005241=452156,NC_008313=4052032 shewPutrCN32 Shewanella putrefaciens CN-32 chr=4659220 aerPer1 Aeropyrum pernix K1 chr=1669696 18255 Bacillus thuringiensis str. Al Hakam NC_008600=5257091,NC_008598=55939 acinSp_ADP1 Acinetobacter sp. ADP1 chr=3598621 anapMarg_ST_MARIES Anaplasma marginale str. St. Maries chr=1197687 297 Xanthomonas axonopodis pv. citri str. 306 NC_003922=64920,NC_003921=33700,NC_003919=5175554 desuPsyc_LSV54 Desulfotalea psychrophila LSv54 chr=3523383,plasmid_small=14664,plasmid_large=121587 17227 Desulfovibrio vulgaris subsp. vulgaris DP4 NC_008751=3462887,NC_008741=198504 190 Yersinia enterocolitica subsp. enterocolitica 8081 NC_008791=67721,NC_008800=4615899 193 Clostridium botulinum A str. ATCC 3502 NC_009495=3886916,NC_009496=16344 270 Streptococcus pyogenes str. Manfredo NC_009332=1841271 16252 Synechococcus sp. JA-2-3B'a(2-13) NC_007776=3046682 16251 Synechococcus sp. JA-3-3Ab NC_007775=2932766 16319 Arcobacter butzleri RM4018 NC_009850=2341251 276 Listeria monocytogenes EGD-e NC_003210=2944528 277 Streptococcus pneumoniae TIGR4 NC_003028=2160842 13427 Heliobacterium modesticaldum Ice1 NC_010337=3075407 279 Staphylococcus epidermidis ATCC 12228 NC_005008=4439,NC_004461=2499279,NC_005003=6585,NC_005006=8007,NC_005007=4679,NC_005004=24365,NC_005005=17261 19979 Flavobacterium psychrophilum JIP02/86 NC_009613=2861988 13548 Prochlorococcus marinus str. AS9601 NC_008816=1669886 16700 Yersinia pestis Pestoides F NC_009378=137010,NC_009381=4517345,NC_009377=71507 therTher_HB8 Thermus thermophilus HB8 chr=1849742,plasmid_pTT27=256992,plasmid_pTT8=9322 28035 Streptococcus pneumoniae Hungary19A-6 NC_010380=2245615 19575 Bradyrhizobium sp. ORS278 NC_009445=7456587 18083 Escherichia coli C str. ATCC 8739 methStad1 Methanosphaera stadtmanae DSM 3091 chr=1767403 magnMagn_AMB_1 Magnetospirillum magneticum AMB-1 chr=4967148 13901 Thermoanaerobacter pseudethanolicus ATCC 33223 NC_010321=2362816 methBurt2 Methanococcoides burtonii DSM 6242 chr=2575032 13908 Rhodoferax ferrireducens T118 NC_007901=257447,NC_007908=4712337 13909 Pseudomonas putida F1 NC_009512=5959964 16400 Haemophilus influenzae PittEE NC_009566=1813033 16401 Haemophilus influenzae PittGG NC_009567=1887192 100 Mycoplasma pulmonis UAB CTIP NC_002771=963879 methMari_C7 Methanococcus maripaludis C7 chr=1772694 106 Halobacterium salinarum R1 NC_010364=2000962,NC_010367=40894,NC_010366=147625,NC_010369=194963,NC_010368=284332 geobSulf Geobacter sulfurreducens PCA chr=3814139 38 Haemophilus ducreyi 35000HP NC_002940=1698955 28247 Synechococcus sp. PCC 7002 NC_010480=124030,NC_010479=38515,NC_010478=31972,NC_010475=3008047,NC_010474=186459,NC_010477=16103,NC_010476=4809 16791 Coxiella burnetii RSA 331 NC_010117=2016427,NC_010115=37317 procMari_CCMP1375 Prochlorococcus marinus subsp. marinus str. CCMP1375 chr=1751080 31 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 NC_009653=3478,NC_009652=4259,NC_009651=88582,NC_009650=107576,NC_009648=5315120,NC_009649=175879 oenoOeni_PSU_1 Oenococcus oeni PSU-1 chr=1780517 16817 Pseudomonas stutzeri A1501 NC_009434=4567418 wiggBrev Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis chr=697724,plasmid_pWb1=5280 10639 Mycoplasma hyopneumoniae 7448 NC_007332=920079 10638 Yersinia pestis biovar Microtus str. 91001 NC_005810=4595065,NC_005813=70159,NC_005815=106642,NC_005814=21742,NC_005816=9609 caldMaqu1 Caldivirga maquilingensis IC-167 chr=2077567 salmEnte_PARATYPI_ATC Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 chr=4585229 onioYell_PHYTOPLASMA Onion yellows phytoplasma OY-M chr=860631 18459 Francisella tularensis subsp. tularensis WY96-3418 NC_009257=1898476 334 Streptococcus agalactiae NEM316 NC_004368=2211485 mariAqua_VT8 Marinobacter aquaeolei VT8 plasmid_pMAQU01=239623,chr=4326849,plasmid_pMAQU02=213290 16719 Fervidobacterium nodosum Rt17-B1 NC_009718=1948941 330 Streptococcus agalactiae 2603V/R NC_004116=2160267 333 Streptococcus mutans UA159 NC_004350=2030921 9638 Lactobacillus johnsonii NCC 533 NC_005362=1992676 17729 Anaeromyxobacter sp. Fw109-5 NC_009675=5277990 shewLoihPV4 Shewanella loihica PV-4 chr=4602594 candPela_UBIQUE_HTCC1 Candidatus Pelagibacter ubique HTCC1062 chr=1308759 myxoXant_DK_1622 Myxococcus xanthus DK 1622 chr=9139763 9636 Rickettsia rickettsii str. 'Sheila Smith' NC_009882=1257710 salmTyph_TY2 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chr=4791961 chloChlo_CAD3 Chlorobium chlorochromatii CaD3 chr=2572079 mesoFlor_L1 Mesoplasma florum L1 chr=793224 28921 Acinetobacter baumannii NC_010401=5644,NC_010402=9661,NC_010403=2726,NC_010404=94413,NC_010410=3936291 hermArse Herminiimonas arsenicoxydans chr=3424307 methMaze1 Methanosarcina mazei Go1 chr=4096345 17343 Sphingomonas wittichii RW1 NC_009508=222757,NC_009507=310228,NC_009511=5382261 99 Mycoplasma pneumoniae M129 NC_000912=816394 13643 Synechococcus sp. CC9605 NC_007516=2510659 13642 Synechococcus sp. WH 7803 NC_009481=2366980 lawsIntr_PHE_MN1_00 Lawsonia intracellularis PHE/MN1-00 plasmid_2=39794,plasmid_3=194553,chr=1457619,plasmid_1=27048 jannCCS1 Jannaschia sp. CCS1 chr=4317977,plasmid1=86072 91 Mycobacterium avium subsp. paratuberculosis K-10 NC_002944=4829781 90 Mycobacterium leprae TN NC_002677=3268203 92 Mycobacterium smegmatis str. MC2 155 NC_008596=6988209 95 Tropheryma whipplei str. Twist NC_004572=927303 13649 Xanthomonas campestris pv. vesicatoria str. 85-10 NC_007505=19146,NC_007504=1852,NC_007507=182572,NC_007506=38116,NC_007508=5178466 13885 Chlamydia trachomatis A/HAR-13 NC_007430=7510,NC_007429=1044459 13884 Rickettsia felis URRWXCal2 NC_007109=1485148,NC_007110=62829,NC_007111=39263 13887 Streptococcus pyogenes MGAS6180 NC_007296=1897573 13760 Corynebacterium glutamicum ATCC 13032 NC_006958=3282708 13888 Streptococcus pyogenes MGAS5005 NC_007297=1838554 ureaUrea Ureaplasma parvum serovar 3 str. ATCC 700970 chr=751719 streCoel Streptomyces coelicolor A3(2) chr=8667507,plasmid_SCP2=31317,plasmid_SCP1=356023 orieTsut_BORYONG Orientia tsutsugamushi str. Boryong chr=2127051 polaJS66 Polaromonas sp. JS666 plasmid_2=338007,chr=5200264,plasmid_1=360405 rhodRubr_ATCC11170 Rhodospirillum rubrum ATCC 11170 chr=4352825,plasmid_unnamed=53732 rhodRHA1 Rhodococcus sp. RHA1 plasmid_pRHL1=1123075,chr=7804765,plasmid_pRHL3=332361,plasmid_pRHL2=442536 pireSp Rhodopirellula baltica SH 1 chr=7145576 franTula_TULARENSIS Francisella tularensis subsp. tularensis SCHU S4 chr=1892819 syneSp_WH8102 Synechococcus sp. WH 8102 chr=2434428 19521 Clostridium botulinum A str. Hall NC_009698=3760560 238 Staphylococcus aureus subsp. aureus COL NC_002951=2809422,NC_006629=4440 15660 Prochlorococcus marinus str. NATL1A NC_008819=1864731 17823 Xylella fastidiosa M12 NC_010513=2475130 methPetr_PM1 Methylibium petroleiphilum PM1 chr=4044195,plasmid_RPME01=599444 237 Staphylococcus aureus subsp. aureus NCTC 8325 NC_007795=2821361 thioCrun_XCL_2 Thiomicrospira crunogena XCL-2 chr=2427734 haloHalo1 Halobacterium sp. NRC-1 chr=2014239,plasmid_pNRC100=191346,plasmid_pNRC200=365425 16190 Roseiflexus sp. RS-1 NC_009523=5801598 idioLoih_L2TR Idiomarina loihiensis L2TR chr=2839318 18637 Methylobacterium extorquens PA1 NC_010172=5471154 sodaGlos_MORSITANS Sodalis glossinidius str. 'morsitans' chr=4171146,plasmid_pSG3=10810,plasmid_pSG2=27240,plasmid_pSG1=83306 18633 Prochlorococcus marinus str. MIT 9215 NC_009840=1738790 mycoTube_H37RV Mycobacterium tuberculosis H37Rv chr=4411532 polyQLWP Polynucleobacter sp. QLW-P1DMWA-1 chr=2159490 peloLute_DSM273 Pelodictyon luteolum DSM 273 chr=2364842 burkCeno_AU_1054 Burkholderia cenocepacia AU 1054 chr3=1196094,chr2=2788459,chr1=3294563 13942 Streptococcus sanguinis SK36 NC_009009=2388435 13943 Burkholderia mallei NCTC 10229 NC_008835=2284095,NC_008836=3458208 ente638 Enterobacter sp. 638 chr=4518712,plasmid_pENTE01=157749 13946 Burkholderia mallei NCTC 10247 NC_009080=3495687,NC_009079=2352693 13947 Burkholderia mallei SAVP1 NC_008784=1734922,NC_008785=3497479 16363 Streptococcus pyogenes MGAS9429 NC_008021=1836467 neorSenn_MIYAYAMA Neorickettsia sennetsu str. Miyayama chr=859006 heliAcin_SHEEBA Helicobacter acinonychis str. Sheeba chr=1553927,plasmid_pHac1=3661 16366 Streptococcus pyogenes MGAS10750 NC_008024=1937111 16365 Streptococcus pyogenes MGAS2096 NC_008023=1860355 13473 Nitrobacter hamburgensis X14 NC_007961=121408,NC_007960=188318,NC_007964=4406967,NC_007959=294829 burkCepa_AMMD Burkholderia ambifaria AMMD plasmid_1=43581,chr3=1281472,chr2=2646969,chr1=3556545 methMari_C5_1 Methanococcus maripaludis C5 chr=1780761,plasmid_pMMC501=8285 13478 Aster yellows witches'-broom phytoplasma AYWB NC_007718=4009,NC_007719=5104,NC_007720=4316,NC_007716=706569,NC_007717=3972 13370 Actinobacillus succinogenes 130Z NC_009655=2319663 methBark1 Methanosarcina barkeri str. Fusaro chr=4837408,plasmid1=36358 geobMeta_GS15 Geobacter metallireducens GS-15 chr=3997420,plasmid_unnamed=13762 eschColi_CFT073 Escherichia coli CFT073 chr=5231428 metMar1 Methanococcus maripaludis S2 chr=1661137 enteFaec_V583 Enterococcus faecalis V583 chr=3218031,plasmid_pTEF1=66320,plasmid_pTEF3=17963,plasmid_pTEF2=57660 17265 Francisella tularensis subsp. holarctica OSU18 NC_008369=1895727 shigFlex_2A Shigella flexneri 2a str. 301 chr=4607203,plasmid_pCP301=221618 erwiCaro_ATROSEPTICA Pectobacterium atrosepticum SCRI1043 chr=5064019 pseuHalo_TAC125 Pseudoalteromonas haloplanktis TAC125 chrII=635328,chrI=3214944 17163 Campylobacter jejuni subsp. doylei 269.97 NC_009707=1845106 17161 Campylobacter curvus 525.92 NC_009715=1971264 10690 Mesorhizobium sp. BNC1 NC_008243=131247,NC_008242=343931,NC_008254=4412446,NC_008244=47561 10694 Ehrlichia canis str. Jake NC_007354=1315030 10697 Mycoplasma mobile 163K NC_006908=777079 25 Bordetella parapertussis 12822 NC_002928=4773551 26 Bordetella pertussis Tohama I NC_002929=4086189 16841 Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) NC_008610=1160782 sulfToko1 Sulfolobus tokodaii str. 7 chr=2694756 404 Lactobacillus brevis ATCC 367 NC_008498=13413,NC_008499=35595,NC_008497=2291220 403 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 NC_008529=1856951 13920 Psychrobacter cryohalolentis K5 NC_007969=3059876,NC_007968=41221 401 Lactococcus lactis subsp. cremoris SK11 NC_008527=2438589,NC_008503=14041,NC_008504=9554,NC_008505=74750,NC_008506=47208,NC_008507=14206 16137 Bradyrhizobium sp. BTAi1 NC_009475=228826,NC_009485=8264687 uncuMeth_RCI uncultured methanogenic archaeon RC-I chr=3179916 coryEffi_YS_314 Corynebacterium efficiens YS-314 chr=3147090 13485 Parabacteroides distasonis ATCC 8503 NC_009615=4811379 409 Mycoplasma gallisepticum R NC_004829=996422 28743 Yersinia pseudotuberculosis YPIII NC_010465=4689441 19469 Escherichia coli SECEC SMS-3-5 NC_010488=130440,NC_010498=5068389,NC_010485=8909,NC_010486=4074,NC_010487=3565 psycArct_273_4 Psychrobacter arcticus 273-4 chr=2650701 propAcne_KPA171202 Propionibacterium acnes KPA171202 chr=2560265 acidJS42 Acidovorax sp. JS42 plasmid_pAOVO01=72689,chr=4448856,plasmid_pAOVO02=63609 chroSale_DSM3043 Chromohalobacter salexigens DSM 3043 chr=3696649 19065 Clostridium kluyveri DSM 555 NC_009466=59182,NC_009706=3964618 18801 Staphylococcus aureus subsp. aureus str. Newman NC_009641=2878897 13151 Shigella sonnei Ss046 NC_009346=5153,NC_009345=8401,NC_009347=2101,NC_007385=214396,NC_007384=4825265 18965 Sulfurovum sp. NBC37-1 NC_009663=2562277 18963 Nitratiruptor sp. SB155-2 NC_009662=1877931 18809 Methylobacterium sp. 4-46 tropWhip_TW08_27 Tropheryma whipplei TW08/27 chr=925938 28135 Bordetella petrii DSM 12804 NC_010170=5287950 natrPhar1 Natronomonas pharaonis DSM 2160 plasmid_PL23=23486,chr=2595221,plasmid_PL131=130989 370 Chlamydophila felis Fe/C-56 NC_007900=7552,NC_007899=1166239 377 Gluconacetobacter diazotrophicus PAl 5 NC_010123=16610,NC_010125=3944163,NC_010124=38818 rubrXyla_DSM9941 Rubrobacter xylanophilus DSM 9941 chr=3225748 15746 Prochlorococcus marinus str. MIT 9301 NC_009091=1641879 15747 Rhodopseudomonas palustris HaA2 NC_007778=5331656 18981 Finegoldia magna ATCC 29328 NC_010376=1797577,NC_010371=189163 franCcI3 Frankia sp. CcI3 chr=5433628 15749 Rhodopseudomonas palustris BisB5 NC_007958=4892717 16549 Janthinobacterium sp. Marseille NC_009659=4110251 89 Mycobacterium bovis AF2122/97 NC_002945=4345492 12716 Citrobacter koseri ATCC BAA-895 NC_009792=4720462,NC_009793=9294,NC_009794=5601 82 Lactobacillus acidophilus NCFM NC_006814=1993560 81 Clostridium tetani E88 NC_004557=2799251,NC_004565=74082 16095 Mycoplasma agalactiae PG2 NC_009497=877438 87 Corynebacterium diphtheriae NCTC 13129 NC_002935=2488635 84 Lactobacillus gasseri ATCC 33323 NC_008530=1894360 85 Listeria monocytogenes str. 4b F2365 NC_002973=2905187 20197 Francisella tularensis subsp. holarctica FTA NC_009749=1890909 caldSacc_DSM8903 Caldicellulosiruptor saccharolyticus DSM 8903 chr=2970275 anabVari_ATCC29413 Anabaena variabilis ATCC 29413 plasmid_B=35762,plasmid_C=300758,chr=6365727,plasmid_A=366354 lactPlan Lactobacillus plantarum WCFS1 chr=3308274,plasmid_pWCFS101=1917,plasmid_pWCFS103=36069,plasmid_pWCFS102=2365 carbHydr_Z_2901 Carboxydothermus hydrogenoformans Z-2901 chr=2401520 13617 Prochlorococcus marinus str. MIT 9515 NC_008817=1704176 10878 Bacillus anthracis str. Sterne NC_005945=5228663 16067 Yersinia pestis Angola NC_010158=114570,NC_010159=4504254,NC_010157=68190 16062 Leuconostoc citreum KM20 NC_010466=31463,NC_010467=17971,NC_010471=1796284,NC_010470=38713,NC_010469=12183 16148 Leptospira borgpetersenii serovar Hardjo-bovis JB197 NC_008511=299762,NC_008510=3576473 16146 Leptospira borgpetersenii serovar Hardjo-bovis L550 NC_008508=3614446,NC_008509=317336 vibrVuln_CMCP6_1 Vibrio vulnificus CMCP6 chrII=1844853,chrI=3281944 10877 Bacillus thuringiensis serovar konkukian str. 97-27 NC_006578=77112,NC_005957=5237682 19517 Clostridium botulinum A str. ATCC 19397 NC_009697=3863450 nitrWino_NB_255 Nitrobacter winogradskyi Nb-255 chr=3402093 16321 Bifidobacterium adolescentis ATCC 15703 NC_008618=2089645 17629 Pseudomonas putida GB-1 NC_010322=6078430 17237 Rickettsia bellii OSU 85-389 NC_009883=1528980 19519 Clostridium botulinum F str. Langeland NC_009700=17531,NC_009699=3995387 mesoLoti Mesorhizobium loti MAFF303099 chr=7036071,plasmid_pMLa=351911,plasmid_pMLb=208315 coxiBurn Coxiella burnetii RSA 493 chr=1995281,plasmid_pQpH1=37393 247 Chlamydophila pneumoniae AR39 NC_002179=1229853 acidBact_ELLIN345 Acidobacteria bacterium Ellin345 chr=5650368 241 Salmonella typhimurium LT2 NC_003277=93939,NC_003197=4857432 16249 Bartonella bacilliformis KC583 NC_008783=1445021 12997 Acaryochloris marina MBIC11017 NC_009929=226680,NC_009928=273121,NC_009934=2133,NC_009932=155110,NC_009933=120693,NC_009930=177162,NC_009931=172728,NC_009925=6503724,NC_009927=356087,NC_009926=374161 xyleFast Xylella fastidiosa 9a5c plasmid_pXF1.3=1286,chr=2679306,plasmid_pXF51=51158 13435 Lactobacillus sakei subsp. sakei 23K NC_007576=1884661 11752 Haemophilus influenzae 86-028NP NC_007146=1914490 16393 Neisseria meningitidis 053442 NC_010120=2153416 16394 Thermoanaerobacter sp. X514 NC_010320=2457259 methKand1 Methanopyrus kandleri AV19 chr=1694969 bifiLong Bifidobacterium longum NCC2705 chr=2256640,plasmid_pBLO1=3626 leptInte Leptospira interrogans serovar Lai str. 56601 chrII=358943,chrI=4332241 burkCeno_HI2424 Burkholderia cenocepacia HI2424 plasmid_1=164857,chr3=1055417,chr2=2998664,chr1=3483902 16364 Streptococcus pyogenes MGAS10270 NC_008022=1928252 13875 Candidatus Blochmannia pennsylvanicus str. BPEN NC_007292=791654 buchSp Buchnera aphidicola str. APS (Acyrthosiphon pisum) chr=640681,plasmid_pTrp=7258,plasmid_pLeu=7786 178 Burkholderia pseudomallei K96243 NC_006351=3173005,NC_006350=4074542 176 Mycoplasma penetrans HF-2 NC_004432=1358633 pyroCali1 Pyrobaculum calidifontis JCM 11548 chr=2009313 chloTepi_TLS Chlorobium tepidum TLS chr=2154946 13282 Synechococcus elongatus PCC 6301 NC_006576=2696255 16800 Pseudomonas entomophila L48 NC_008027=5888780 picrTorr1 Picrophilus torridus DSM 9790 chr=1545895 shewANA3 Shewanella sp. ANA-3 plasmid_1=278942,chr1=4972204 13443 Listeria welshimeri serovar 6b str. SLCC5334 NC_008555=2814130 bdelBact Bdellovibrio bacteriovorus HD100 chr=3782950 gramFors_KT0803 Gramella forsetii KT0803 chr=3798465 184 Clavibacter michiganensis subsp. sepedonicus 189 Streptomyces avermitilis MA-4680 NC_004719=94287,NC_003155=9025608 clavMich_NCPPB_382 Clavibacter michiganensis subsp. michiganensis NCPPB 382 chr=3297891,plasmid_pCM1=27357,plasmid_pCM2=69989 peloCarb Pelobacter carbinolicus DSM 2380 chr=3665893 20083 Campylobacter hominis ATCC BAA-381 NC_009713=3678,NC_009714=1711273 saliTrop_CNB_440 Salinispora tropica CNB-440 chr=5183331 17057 Borrelia afzelii PKo NC_008277=905394,NC_008274=26533,NC_008273=30017,NC_008568=28533,NC_008569=24794,NC_008566=34273,NC_008567=32368,NC_008564=59958,NC_008565=59804 campJeju Campylobacter jejuni subsp. jejuni NCTC 11168 chr=1641481 17053 Pseudomonas putida W619 NC_010501=5774330 12 Pseudomonas fluorescens PfO-1 NC_007492=6438405 15 Xanthomonas campestris pv. campestris str. 8004 NC_007086=5148708 12475 Wolbachia endosymbiont strain TRS of Brugia malayi NC_006833=1080084 13217 Azoarcus sp. BH72 NC_008702=4376040 dehaEthe_195 Dehalococcoides ethenogenes 195 chr=1469720 methTherPT1 Methanosaeta thermophila PT chr=1879471 shewMR7 Shewanella sp. MR-7 chr=4792610,plasmid1=6499 shewMR4 Shewanella sp. MR-4 chr=4706287 15708 Acidovorax avenae subsp. citrulli AAC00-1 NC_008752=5352772 19087 Ureaplasma parvum serovar 3 str. ATCC 27815 geobUran_RF4 Geobacter uraniireducens Rf4 chr=5136364 shewDeni Shewanella denitrificans OS217 chr=4545906 pyrFur2 Pyrococcus furiosus DSM 3638 chr=1908256 desuRedu_MI_1 Desulfotomaculum reducens MI-1 chr=3608104 syntFuma_MPOB Syntrophobacter fumaroxidans MPOB chr=4990251 278 Streptococcus pneumoniae R6 NC_003098=2038615 13654 Synechococcus sp. RCC307 NC_009482=2224914 13655 Synechococcus sp. CC9902 NC_007513=2234828 16313 Staphylococcus aureus subsp. aureus USA300 NC_007790=3125,NC_007791=4439,NC_007792=37136,NC_007793=2872769 legiPneu_PHILADELPHIA Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chr=3397754 20391 Bacillus pumilus SAFR-032 NC_009848=3704465 chlaPneu_CWL029 Chlamydophila pneumoniae CWL029 chr=1230230 16259 Escherichia coli UTI89 NC_007946=5065741,NC_007941=114230 13067 Bacteroides fragilis YCH46 NC_006297=33716,NC_006347=5277274 gloeViol Gloeobacter violaceus PCC 7421 chr=4659019 moorTher_ATCC39073 Moorella thermoacetica ATCC 39073 chr=2628784 323 Pseudomonas syringae pv. syringae B728a NC_007005=6093698 320 Brucella suis 1330 NC_004311=1207381,NC_004310=2107794 roseDeni_OCH_114 Roseobacter denitrificans OCh 114 chr=5824 326 Streptococcus agalactiae A909 NC_007432=2127839 327 Pseudomonas fluorescens Pf-5 NC_004129=7074893 325 Ehrlichia chaffeensis str. Arkansas NC_007799=1176248 329 Desulfovibrio desulfuricans G20 NC_007519=3730232 16203 Brucella melitensis biovar Abortus 2308 NC_007624=1156948,NC_007618=2121359 12950 Yersinia pseudotuberculosis IP 32953 NC_006153=68525,NC_006155=4744671,NC_006154=27702 heliPylo_26695 Helicobacter pylori 26695 chr=1667867 12952 Rickettsia canadensis str. McKiel NC_009879=1159772 12953 Rickettsia akari str. Hartford NC_009881=1231060 16208 Mycoplasma capricolum subsp. capricolum ATCC 27343 NC_007633=1010023 17375 Francisella tularensis subsp. tularensis FSC198 NC_008245=1892616 19259 Acholeplasma laidlawii PG-8A NC_010163=1496992 77 Clostridium acetobutylicum ATCC 824 NC_003030=3940880,NC_001988=192000 74 Bacillus cereus ATCC 10987 NC_005707=208369,NC_003909=5224283 15770 Dehalococcoides sp. BAV1 NC_009455=1341892 79 Clostridium perfringens str. 13 NC_003042=54310,NC_003366=3031430 78 Clostridium difficile 630 NC_009089=4290252,NC_008226=7881 13624 Bacillus cereus subsp. cytotoxis NVH 391-98 NC_009674=4087024,NC_009673=7135 13623 Bacillus weihenstephanensis KBAB4 NC_010184=5262775,NC_010181=75107,NC_010180=417054,NC_010183=52830,NC_010182=64977 tricEryt_IMS101 Trichodesmium erythraeum IMS101 chr=7750108 photLumi Photorhabdus luminescens subsp. laumondii TTO1 chr=5688987 peloTher_SI Pelotomaculum thermopropionicum SI chr=3025375 18789 Shewanella sediminis HAW-EB3 NC_009831=5517674 therKoda1 Thermococcus kodakarensis KOD1 chr=2088737 oceaIhey Oceanobacillus iheyensis HTE831 chr=3630528 16297 Xanthomonas oryzae pv. oryzae MAFF 311018 NC_007705=4940217 19639 Methanococcus maripaludis C6 NC_009975=1744193 blocFlor Candidatus Blochmannia floridanus chr=705557 shewW318 Shewanella sp. W3-18-1 chr=4708380 16184 Clostridium phytofermentans ISDg NC_010001=4847594 17477 Acinetobacter baumannii ATCC 17978 NC_009084=11302,NC_009085=3976747,NC_009083=13408 therElon Thermosynechococcus elongatus BP-1 chr=2593857 13403 Bacillus amyloliquefaciens FZB42 NC_009725=3918589 17679 Petrotoga mobilis SJ95 NC_010003=2169548 16374 Streptococcus pneumoniae D39 NC_008533=2046115 16375 Shigella flexneri 5 str. 8401 NC_008258=4574284 methBoon1 Candidatus Methanoregula boonei 6A8 chr=2542943 mariMari_MCS10 Maricaulis maris MCS10 chr=3368780 ralsEutr_JMP134 Ralstonia eutropha JMP134 plasmid_1=87688,chr2=2726152,chr1=3806533,megaplasmid=634917 baciSubt Bacillus subtilis subsp. subtilis str. 168 chr=4214630 16372 Buchnera aphidicola str. Cc (Cinara cedri) NC_008513=416380 213 Prochlorococcus marinus subsp. pastoris str. CCMP1986 NC_005072=1657990 erytLito_HTCC2594 Erythrobacter litoralis HTCC2594 chr=3052398 acidCell_11B Acidothermus cellulolyticus 11B chr=2443540 pyrAer1 Pyrobaculum aerophilum str. IM2 chr=2222430 xantCamp Xanthomonas campestris pv. campestris str. ATCC 33913 chr=5076188 thioDeni_ATCC25259 Thiobacillus denitrificans ATCC 25259 chr=2909809 28583 Chlamydia trachomatis 434/Bu NC_010287=1038842 deinRadi Deinococcus radiodurans R1 plasmid_CP1=45704,plasmid_MP1=177466,chr2=412348,chr1=2648638 yersPest_CO92 Yersinia pestis CO92 chr=4653728,plasmid_pCD1=70305,plasmid_pPCP1=9612,plasmid_pMT1=96210 28585 Chlamydia trachomatis L2b/UCH-1/proctitis NC_010280=1038869 wolbEndo_OF_DROSOPHIL Wolbachia endosymbiont of Drosophila melanogaster chr=1267782 17153 Streptococcus suis 05ZYH33 NC_009442=2096309 10689 Kineococcus radiotolerans SRS30216 NC_009806=182572,NC_009664=4761183,NC_009660=12917 17155 Streptococcus suis 98HAH33 NC_009443=2095698 17159 Campylobacter concisus 13826 NC_009802=2052007,NC_009796=16457,NC_009795=30949 ralsSola Ralstonia solanacearum GMI1000 chr=3716413,plasmid_pGMI1000MP=2094509 10687 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 NC_005823=4277185,NC_005824=350181 17403 Frankia alni ACN14a NC_008278=7497934 16871 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 NC_008054=1864998 12388 Bacillus licheniformis ATCC 14580 NC_006270=4222597 neisMeni_Z2491_1 Neisseria meningitidis Z2491 chr=2184406 saliRube_DSM13855 Salinibacter ruber DSM 13855 chr=3551823,plasmid_pSR35=35505 17953 Campylobacter jejuni subsp. jejuni 81116 NC_009839=1628115 10616 Mycoplasma mycoides subsp. mycoides SC str. PG1 NC_005364=1211703 13496 Prochlorococcus marinus str. MIT 9303 NC_008820=2682675 28507 Clostridium botulinum A3 str. Loch Maree NC_010520=3992906,NC_010418=266785 colwPsyc_34H Colwellia psychrerythraea 34H chr=5373180 hyphNept_ATCC15444 Hyphomonas neptunium ATCC 15444 chr=3705021 vibrChol1 Vibrio cholerae O1 biovar eltor str. N16961 chrII=1072315,chrI=2961149 deinGeot_DSM11300 Deinococcus geothermalis DSM 11300 chr=2467205,plasmid_1=574127 312 Buchnera aphidicola str. Sg (Schizaphis graminum) NC_004061=641454 311 Streptococcus pyogenes MGAS315 NC_004070=1900521 metaSedu Metallosphaera sedula DSM 5348 chr=2191517 314 Clostridium thermocellum ATCC 27405 NC_009012=3843301 lactSali_UCC118 Lactobacillus salivarius UCC118 plasmid_pSF118-20=20417,chr=1827111,plasmid_pMP118=242436,plasmid_pSF118-44=44013 pediPent_ATCC25745 Pediococcus pentosaceus ATCC 25745 chr=1832387 flavJohn_UW101 Flavobacterium johnsoniae UW101 chr=6096872 mannSucc_MBEL55E Mannheimia succiniciproducens MBEL55E chr=2314078 haemSomn_129PT Haemophilus somnus 129PT chr=2007700,plasmid_pHS129=5178 13145 Shigella dysenteriae Sd197 NC_007606=4369232,NC_007607=182726,NC_009344=8953 13146 Shigella boydii Sb227 NC_007613=4519823,NC_007608=126697 17491 Legionella pneumophila str. Corby NC_009494=3576470 nanEqu1 Nanoarchaeum equitans Kin4-M chr=490885 12508 Staphylococcus haemolyticus JCSC1435 NC_007168=2685015 13384 Pelobacter propionicus DSM 2379 NC_008609=4008000,NC_008608=30722,NC_008607=202397 chlaTrac Chlamydia trachomatis D/UW-3/CX chr=1042519 haloWals1 Haloquadratum walsbyi DSM 16790 chr=3132494,plasmid_PL47=46867 13389 Shewanella baltica OS195 NC_009998=75605,NC_009999=75508,NC_010000=49148,NC_009997=5347283 baciHalo Bacillus halodurans C-125 chr=4202352 hypeButy1 Hyperthermus butylicus DSM 5456 chr=1667163 chroViol Chromobacterium violaceum ATCC 12472 chr=4751080 16088 Francisella tularensis subsp. novicida U112 NC_008601=1910031 methJann1 Methanocaldococcus jannaschii DSM 2661 chr=1664970,lg_extrachr=58407,sm_extrachr=16550 384 Bacillus cereus ATCC 14579 NC_004721=15274,NC_004722=5411809 pastMult Pasteurella multocida subsp. multocida str. Pm70 chr=2257487 386 Pseudomonas aeruginosa UCBPP-PA14 NC_008463=6537648 388 Haemophilus somnus 2336 NC_010519=2263857 16083 Alkaliphilus oremlandii OhILAs NC_009922=3123558 27853 Francisella philomiragia subsp. philomiragia ATCC 25017 NC_010331=3936,NC_010336=2045775 16081 Mycobacterium sp. KMS NC_008703=302089,NC_008704=216763,NC_008705=5737227 cytoHutc_ATCC33406 Cytophaga hutchinsonii ATCC 33406 chr=4433218 nitrEuro Nitrosomonas europaea ATCC 19718 chr=2812094 12720 Enterobacter sakazakii ATCC BAA-894 NC_009780=131196,NC_009778=4368373,NC_009779=31208 therMari Thermotoga maritima MSB8 chr=1860725 mycoGeni Mycoplasma genitalium G37 chr=580076 vibrFisc_ES114_1 Vibrio fischeri ES114 chrII=1332022,plasmid_pES100=45849,chrI=2906179 pyroIsla1 Pyrobaculum islandicum DSM 4184 chr=1826402 17407 Burkholderia multivorans ATCC 17616 NC_010084=3448466,NC_010070=167422,NC_010086=2472928,NC_010087=919806 13030 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- NC_010067=4600800 18271 Rickettsia massiliae MTU5 NC_009897=15286,NC_009900=1360898 21047 Candidatus Desulforudis audaxviator MP104C NC_010424=2349476 19857 Vibrio harveyi ATCC BAA-1116 NC_009783=3765351,NC_009777=89008,NC_009784=2204018 17639 Parvibaculum lavamentivorans DS-1 NC_009719=3914745 18059 Mycobacterium bovis BCG str. Pasteur 1173P2 NC_008769=4374522 vibrPara1 Vibrio parahaemolyticus RIMD 2210633 chrII=1877212,chrI=3288558 259 Escherichia coli O157:H7 EDL933 NC_007414=92077,NC_002655=5528445 64 Staphylococcus epidermidis RP62A NC_006663=27310,NC_002976=2616530 neisGono_FA1090_1 Neisseria gonorrhoeae FA 1090 chr=2153922 66 Streptococcus gordonii str. Challis substr. CH1 NC_009785=2196662 16723 Aeromonas salmonicida subsp. salmonicida A449 NC_009349=166749,NC_009348=4702402,NC_009350=155098,NC_004923=5424,NC_004924=5616,NC_004925=5247 16230 Mycobacterium ulcerans Agy99 NC_008611=5631606 16721 Coxiella burnetii Dugway 5J108-111 NC_009727=2158758,NC_009726=54179 16720 Pseudomonas aeruginosa PA7 NC_009656=6588339 256 Buchnera aphidicola str. Bp (Baizongia pistaciae) NC_004555=2399,NC_004545=615980 257 Chlamydophila pneumoniae J138 NC_002491=1226565 novoArom_DSM12444 Novosphingobium aromaticivorans DSM 12444 chr=3561584,plasmid_pNL2=487268,plasmid_pNL1=184462 15642 Mycobacterium tuberculosis F11 NC_009565=4424435 azoaSp_EBN1 Azoarcus sp. EbN1 plasmid_2=223670,chr=4296230,plasmid_1=207355 therTher_HB27 Thermus thermophilus HB27 chr=1894877,plasmid_pTT27=232605 metAce1 Methanosarcina acetivorans C2A chr=5751492 glucOxyd_621H Gluconobacter oxydans 621H plasmid_pGOX2=26568,plasmid_pGOX1=163186,chr=2702173,plasmid_pGOX3=14547,plasmid_pGOX4=13223,plasmid_pGOX5=2687 listInno Listeria innocua Clip11262 chr=3011208,plasmid_pLI100=81905 sulfAcid1 Sulfolobus acidocaldarius DSM 639 chr=2225959 geobTher_NG80_2 Geobacillus thermodenitrificans NG80-2 chr=3550319,plasmid_pLW1071=57693 402 Lactobacillus casei ATCC 334 NC_008502=29061,NC_008526=2895264 13960 Escherichia coli E24377A NC_009789=6199,NC_009788=70609,NC_009801=4979619,NC_009790=74224,NC_009791=5033,NC_009787=34367,NC_009786=79237 13954 Burkholderia pseudomallei 1710b NC_007435=3181762,NC_007434=4126292 17445 Marinomonas sp. MWYL1 NC_009654=5100344 13967 Corynebacterium jeikeium K411 NC_003080=14323,NC_007164=2462499 leifXyli_XYLI_CTCB0 Leifsonia xyli subsp. xyli str. CTCB07 chr=2584158 10645 Synechococcus elongatus PCC 7942 NC_007604=2695903,NC_007595=46366 campFetu_82_40 Campylobacter fetus subsp. fetus 82-40 chr=1773615 13355 Ehrlichia ruminantium str. Welgevonden NC_006832=1512977 desuHafn_Y51 Desulfitobacterium hafniense Y51 chr=5727534 13356 Ehrlichia ruminantium str. Gardel NC_006831=1499920 13291 Bacillus clausii KSM-K16 NC_006582=4303871 16421 Francisella tularensis subsp. holarctica NC_007880=1895994 therVolc1 Thermoplasma volcanium GSS1 chr=1584804 soliUsit_ELLIN6076 Solibacter usitatus Ellin6076 chr=9965640 bradJapo Bradyrhizobium japonicum USDA 110 chr=9105828 methTher1 Methanothermobacter thermautotrophicus str. Delta H chr=1751377 13454 Pseudoalteromonas atlantica T6c NC_008228=5187005 methAeol1 Methanococcus aeolicus Nankai-3 chr=1569500 nostSp Nostoc sp. PCC 7120 plasmid_pCC7120delta=55414,plasmid_pCC7120beta=186614,chr=6413771,plasmid_pCC7120gamma=101965,plasmid_pCC7120alpha=408101,plasmid_pCC7120zeta=5584,plasmid_pCC7120epsilon=40340 sphiAlas_RB2256 Sphingopyxis alaskensis RB2256 F_plasmid=28543,chr=3345170 saccDegr_2_40 Saccharophagus degradans 2-40 chr=5057531 408 Shigella flexneri 2a str. 2457T NC_004741=4599354 anaeDeha_2CP_C Anaeromyxobacter dehalogenans 2CP-C chr=5013479 bordBron Bordetella bronchiseptica RB50 chr=5339179 rickBell_RML369_C Rickettsia bellii RML369-C chr=1522076 pyroArse1 Pyrobaculum arsenaticum DSM 13514 chr=2121076 thioDeni_ATCC33889 Sulfurimonas denitrificans DSM 1251 chr=2201561 methSmit1 Methanobrevibacter smithii ATCC 35061 chr=1853160 halMar1 Haloarcula marismortui ATCC 43049 chrII=288050,plasmid_pNG600=155300,plasmid_pNG100=33303,plasmid_pNG200=33452,plasmid_pNG500=132678,plasmid_pNG400=50060,plasmid_pNG300=39521,chrI=3131724,plasmid_pNG700=410554 9618 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 NC_006855=49558,NC_006856=138742,NC_006905=4755700 9619 Brucella abortus biovar 1 str. 9-941 NC_006933=1162204,NC_006932=2124241 vermEise_EF01_2 Verminephrobacter eiseniae EF01-2 chr=5566749,plasmid_pVEIS01=31194 granBeth_CGDNIH1 Granulibacter bethesdensis CGDNIH1 chr=2708355 alcaBork_SK2 Alcanivorax borkumensis SK2 chr=3120143 vibrChol_O395_1 Vibrio cholerae O395 chr2=3024069,chr1=1108250 nitrOcea_ATCC19707 Nitrosococcus oceani ATCC 19707 chr=3481691,plasmid_A=40420 campJeju_RM1221 Campylobacter jejuni RM1221 chr=1777831 12468 Bacillus cereus E33L NC_007103=466370,NC_007105=53501,NC_007104=5108,NC_007107=9150,NC_007106=8191,NC_006274=5300915 12469 Streptococcus pyogenes MGAS10394 NC_006086=1899877 19135 Actinobacillus pleuropneumoniae serovar 3 str. JL03 NC_010278=2242062 woliSucc Wolinella succinogenes DSM 1740 chr=2110355 19485 Ochrobactrum anthropi ATCC 49188 NC_009668=1895911,NC_009669=170351,NC_009667=2887297,NC_009671=93589,NC_009670=101491,NC_009672=57138 therPend1 Thermofilum pendens Hrk 5 chr=1781889,pTPEN01=31504 19489 Staphylococcus aureus subsp. aureus USA300_TCH1516 NC_010079=2872915,NC_010063=27041 therFusc_YX Thermobifida fusca YX chr=3642249 12609 Chlorobium phaeobacteroides DSM 266 NC_008639=3133902 aquiAeol Aquifex aeolicus VF5 chr=1551335,plasmid_ece1=39456 heliPylo_J99 Helicobacter pylori J99 chr=1643831 burkPseu_1106A Burkholderia pseudomallei 1106a chrII=3100794,chrI=3988455 azorCaul2 Azorhizobium caulinodans ORS 571 chr=5369772 12607 Prosthecochloris vibrioformis DSM 265 NC_009337=1966858 synePCC6 Synechocystis sp. PCC 6803 plasmid_pSYSG=44343,chr=3573470,plasmid_pSYSM=119895,plasmid_pSYSA=103307,plasmid_pSYSX=106004 baumCica_HOMALODISCA Baumannia cicadellinicola str. Hc (Homalodisca coagulata) chr=686194 355 Chlamydophila abortus S26/3 NC_004552=1144377 28111 Sorangium cellulosum 'So ce 56' NC_010162=13033779 shewBalt Shewanella baltica OS155 plasmid_pSbal04=7995,chr=5127376,plasmid_pSbal01=116763,plasmid_pSbal02=74000,plasmid_pSbal03=16762 therTeng Thermoanaerobacter tengcongensis MB4 chr=2689445 359 Pseudomonas syringae pv. tomato str. DC3000 NC_004632=67473,NC_004578=6397126,NC_004633=73661 19943 Rickettsia rickettsii str. Iowa NC_010263=1268175 alkaEhrl_MLHE_1 Alkalilimnicola ehrlichei MLHE-1 chr=3275944 sulSol1 Sulfolobus solfataricus P2 chr=2992245 15604 Dehalococcoides sp. CBDB1 NC_007356=1395502 19265 Nitrosopumilus maritimus SCM1 NC_010085=1645259 19543 Thermotoga sp. RQ2 methHung1 Methanospirillum hungatei JF-1 chr=3544738 27803 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 NC_010102=4858887 28505 Clostridium botulinum B1 str. Okra NC_010516=3958233,NC_010379=148780 15766 Lactobacillus reuteri F275 NC_009513=1999618 17929 Burkholderia cenocepacia MC0-3 NC_010512=1224595,NC_010508=3532883,NC_010515=3213911 15762 Mycobacterium sp. MCS NC_008146=5705448,NC_008147=215075 15760 Mycobacterium gilvum PYR-GCK NC_009341=16660,NC_009340=25309,NC_009338=5619607,NC_009339=321253 15761 Mycobacterium vanbaalenii PYR-1 NC_008726=6491865 18797 Lactococcus lactis subsp. cremoris MG1363 NC_009004=2529478 20371 Brucella suis ATCC 23445 NC_010167=1400844,NC_010169=1923763 desuVulg_HILDENBOROUG Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough chr=3570858,megaplasmid=202301 20079 Escherichia coli DH10B NC_010473=4686137 288 Yersinia pestis KIM NC_004838=100990,NC_004088=4600755 13006 Alkaliphilus metalliredigens QYMF NC_009633=4929566 13001 Acinetobacter baumannii NC_010398=24922,NC_010400=3421954,NC_010395=6106,NC_010396=25014 4 Treponema denticola ATCC 35405 NC_002967=2843201 283 Agrobacterium tumefaciens str. C58 NC_003062=2841580,NC_003063=2075577,NC_003064=542868,NC_003065=214233 methVann1 Methanococcus vannielii SB chr=1720048 285 Xylella fastidiosa Temecula1 NC_004556=2519802,NC_004554=1346 286 Streptococcus pyogenes MGAS8232 NC_003485=1895017 candCars_RUDDII Candidatus Carsonella ruddii PV chr=159662 336 Anaplasma phagocytophilum HZ NC_007797=1471282 burkMall_ATCC23344 Burkholderia mallei ATCC 23344 chr2=2325379,chr1=3510148 leucMese_ATCC8293 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 chr=2038396,plasmid_pLEUM1=37367 burkViet_G4 Burkholderia vietnamiensis G4 chr3=1241007,chr2=2411759,chr1=3652814,plasmid_pBVIE04=107231,plasmid_pBVIE05=88096,plasmid_pBVIE02=265616,plasmid_pBVIE03=226679,plasmid_pBVIE01=397868 267 Pseudomonas putida KT2440 NC_002947=6181863 266 Staphylococcus aureus subsp. aureus MSSA476 NC_005951=20652,NC_002953=2799802 265 Staphylococcus aureus subsp. aureus MRSA252 NC_002952=2902619 264 Staphylococcus aureus subsp. aureus N315 NC_003140=24653,NC_002745=2814816 17643 Shewanella baltica OS185 NC_009665=5229686,NC_009661=83224 archFulg1 Archaeoglobus fulgidus DSM 4304 chr=2178400 13418 Polaromonas naphthalenivorans CJ2 NC_008757=353291,NC_008759=171866,NC_008758=190172,NC_008781=4410291,NC_008764=6459,NC_008760=143747,NC_008761=58808,NC_008762=21611,NC_008763=9898 18007 Desulfococcus oleovorans Hxd3 NC_009943=3944167 16304 Sinorhizobium medicae WSM419 NC_009622=219313,NC_009620=1570951,NC_009621=1245408,NC_009636=3781904 16306 Caulobacter sp. K31 NC_010333=177878,NC_010338=5477872,NC_010335=233649 59 Chloroflexus aurantiacus J-10-fl NC_010175=5258541 12530 Synechococcus sp. CC9311 NC_008319=2606748 13551 Prochlorococcus marinus str. MIT 9211 NC_009976=1688963 15691 Mycobacterium abscessus NC_010394=23319,NC_010397=5067172 fusoNucl Fusobacterium nucleatum subsp. nucleatum ATCC 25586 chr=2174500 63 Staphylococcus aureus RF122 NC_007622=2742531 heliHepa Helicobacter hepaticus ATCC 51449 chr=1799146 17249 Thermosipho melanesiensis BI429 NC_009616=1915238 15596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 NC_007350=2516575,NC_007351=38454,NC_007352=22870 psycIngr_37 Psychromonas ingrahamii 37 chr=4559598 syntAcid_SB Syntrophus aciditrophicus SB chr=3179300 salmTyph Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid_pHCM2=106516,chr=4809037,plasmid_pHCM1=218160 burkXeno_LB400 Burkholderia xenovorans LB400 chr3=1471779,chr2=3363523,chr1=4895836 trepPall Treponema pallidum subsp. pallidum str. Nichols chr=1138011 neisMeni_MC58_1 Neisseria meningitidis MC58 chr=2272360 syntWolf_GOETTINGEN Syntrophomonas wolfei subsp. wolfei str. Goettingen chr=2936195 15644 Thermotoga lettingae TMO NC_009828=2135342 13913 Nitrosomonas eutropha C91 NC_008342=55635,NC_008341=65132,NC_008344=2661057 17417 Dinoroseobacter shibae DFL 12 NC_009958=86208,NC_009959=72296,NC_009955=190506,NC_009956=152970,NC_009957=126304,NC_009952=3789584 13911 Prochlorococcus marinus str. NATL2A NC_007335=1842899 13910 Prochlorococcus marinus str. MIT 9312 NC_007577=1709204 250 Ralstonia metallidurans CH34 NC_007974=2580084,NC_007971=233720,NC_007972=171459,NC_007973=3928089 13915 Frankia sp. EAN1pec NC_009921=8982042 13914 Ignicoccus hospitalis KIN4/I NC_009776=1297538 rhodSpha_2_4_1 Rhodobacter sphaeroides 2.4.1 chr2=943016,chr1=3188609,plasmid_B=114178,plasmid_C=105284,plasmid_A=114045,plasmid_D=100828,plasmid_E=37100 16235 Escherichia coli 536 NC_008253=4938920 zymoMobi_ZM4 Zymomonas mobilis subsp. mobilis ZM4 chr=2056416 rhodPalu_CGA009 Rhodopseudomonas palustris CGA009 chr=5459213,plasmid_pRPA=8427 420 Chlamydophila pneumoniae TW-183 NC_005043=1225935 stapMari1 Staphylothermus marinus F1 chr=1570485 sinoMeli Sinorhizobium meliloti 1021 chr=3654135,plasmid_pSymA=1354226,plasmid_pSymB=1683333 bartHens_HOUSTON_1 Bartonella henselae str. Houston-1 chr=1931047 301 Streptococcus pyogenes SSI-1 NC_004606=1894275 19193 Corynebacterium glutamicum R NC_009343=49120,NC_009342=3314179 304 Clostridium perfringens ATCC 13124 NC_008261=3256683 306 Staphylococcus aureus subsp. aureus MW2 NC_003923=2820462 307 Corynebacterium glutamicum ATCC 13032 NC_003450=3309401 caulCres Caulobacter crescentus CB15 chr=4016947 haheChej_KCTC_2396 Hahella chejuensis KCTC 2396 chr=7215267 10784 Bacillus anthracis str. 'Ames Ancestor' NC_007530=5227419,NC_007323=94830,NC_007322=181677 magnMC1 Magnetococcus sp. MC-1 chr=4719581 heliPylo_HPAG1 Helicobacter pylori HPAG1 chr=1596366,plasmid_pHPAG1=9370 pyrHor1 Pyrococcus horikoshii OT3 chr=1738505 12514 Brucella ovis ATCC 25840 NC_009505=2111370,NC_009504=1164220 12512 Arthrobacter aurescens TC1 NC_008711=4597686,NC_008713=300725,NC_008712=328237 actiPleu_L20 Actinobacillus pleuropneumoniae L20 chr=2274482 paraDeni_PD1222 Paracoccus denitrificans PD1222 plasmid_1=653815,chr2=1730097,chr1=2852282 borrBurg Borrelia burgdorferi B31 plasmid_cp26=26498,plasmid_lp21=18753,plasmid_lp25=24177,plasmid_lp28-4=27323,plasmid_lp28-2=29766,plasmid_lp28-3=28601,plasmid_lp28-1=26921,chr=910724,plasmid_cp9=9386,plasmid_lp5=5228,plasmid_lp38=38829,plasmid_lp17=16823,plasmid_cp32-1=30750,plasmid_cp32-6=29838,plasmid_cp32-7=30800,plasmid_cp32-4=30299,plasmid_cp32-8=30885,plasmid_cp32-9=30651,plasmid_lp36=36849,plasmid_lp56=52971,plasmid_lp54=53561,plasmid_cp32-3=30223 strePyog_M1_GAS Streptococcus pyogenes M1 GAS chr=1852441 pseuAeru Pseudomonas aeruginosa PAO1 chr=6264404 16523 Herpetosiphon aurantiacus ATCC 23779 NC_009974=99204,NC_009972=6346587,NC_009973=339639 16525 Candidatus Korarchaeum cryptofilum OPF8 NC_010482=1590757 19619 Lysinibacillus sphaericus C3-41 NC_010382=4639821,NC_010381=177642 19617 Candidatus Sulcia muelleri GWSS NC_010118=245530 saccEryt_NRRL_2338 Saccharopolyspora erythraea NRRL 2338 chr=8212805 methCaps_BATH Methylococcus capsulatus str. Bath chr=3304561 16645 Yersinia pestis Antiqua NC_008150=4702289,NC_008122=70299,NC_008120=96471,NC_008121=10777 16646 Yersinia pestis Nepal516 NC_008149=4534590,NC_008119=10778,NC_008118=100918 12637 Clostridium beijerinckii NCIMB 8052 NC_009617=6000632 ehrlRumi_WELGEVONDEN Ehrlichia ruminantium str. Welgevonden chr=1516355 methLabrZ_1 Methanocorpusculum labreanum Z chr=1804962 vibrVuln_YJ016_1 Vibrio vulnificus YJ016 plasmid_pYJ016=48508,chrII=1857073,chrI=3354505 13773 Streptococcus thermophilus LMD-9 NC_008500=4449,NC_008501=3361,NC_008532=1856368 20039 Leptothrix cholodnii SP-6 shewAmaz Shewanella amazonensis SB2B chr=4306142 13126 Legionella pneumophila str. Lens NC_006369=3345687,NC_006366=59832 13127 Legionella pneumophila str. Paris NC_006368=3503610,NC_006365=131885 13120 Mycoplasma hyopneumoniae 232 NC_006360=892758 18509 Staphylococcus aureus subsp. aureus Mu3 NC_009782=2880168 13040 Silicibacter sp. TM1040 NC_008043=821788,NC_008042=130973,NC_008044=3200938 18267 Candidatus Vesicomyosocius okutanii HA NC_009465=1022154 methFlag_KT Methylobacillus flagellatus KT chr=2971517 therAcid1 Thermoplasma acidophilum DSM 1728 chr=1564906 therPetr_RKU_1 Thermotoga petrophila RKU-1 chr=1823511 shewFrig Shewanella frigidimarina NCIMB 400 chr=4845257 photProf_SS9 Photobacterium profundum SS9 chr2=2237943,chr1=4085304,plasmid_pPBPR1=80033 burkThai_E264 Burkholderia thailandensis E264 chrII=2914771,chrI=3809201 17811 Lactobacillus helveticus DPC 4571 NC_010080=2080931 229 Chlamydia muridarum Nigg NC_002182=7501,NC_002620=1072950 228 Chlamydophila caviae GPIC NC_004720=7966,NC_003361=1173390 nitrMult_ATCC25196 Nitrosospira multiformis ATCC 25196 plasmid_2=17036,plasmid_3=14159,plasmid_1=18871,chr1=3184243 223 Mycobacterium tuberculosis CDC1551 NC_002755=4403837 220 Prochlorococcus marinus str. MIT 9313 NC_005071=2410873 20241 Shewanella halifaxensis HAW-EB4 NC_010334=5226917 20243 Brucella canis ATCC 23365 NC_010104=1206800,NC_010103=2105969 88 Mycobacterium avium 104 NC_008595=5475491 19227 Renibacterium salmoninarum ATCC 33209 NC_010168=3155250 neisMeni_FAM18_1 Neisseria meningitidis FAM18 chr=2194961 arthFB24 Arthrobacter sp. FB24 plasmid_2=115507,plasmid_3=96488,plasmid_1=159538,chr1=4698945 10679 Rickettsia typhi str. Wilmington NC_006142=1111496 17457 Pseudomonas mendocina ymp NC_009439=5072807 13959 Escherichia coli HS NC_009800=4643538 17455 Shewanella woodyi ATCC 51908 NC_010506=5935403 17109 Salinispora arenicola CNS-205 NC_009953=5786361 17459 Serratia proteamaculans 568 NC_009832=5448853,NC_009829=46804 13953 Burkholderia pseudomallei 668 NC_009075=3127456,NC_009074=3912947 10676 Mycoplasma synoviae 53 NC_007294=799476 10675 Mycoplasma hyopneumoniae J NC_007295=897405 16820 Clostridium novyi NT NC_008593=2547720 nocaFarc_IFM10152 Nocardia farcinica IFM 10152 chr=6021225,plasmid_pNF1=184026,plasmid_pNF2=87093 13378 Bacteroides vulgatus ATCC 8482 NC_009614=5163189 16351 Escherichia coli W3110 AC_000091=4646332 porpGing_W83 Porphyromonas gingivalis W83 chr=2343476 17415 Shewanella pealeana ATCC 700345 NC_009901=5174581 eschColi_APEC_O1 Escherichia coli APEC O1 chr=5082025 46 Bacteroides fragilis NCTC 9343 NC_003228=5205140,NC_006873=36560 13462 Roseiflexus castenholzii DSM 13941 NC_009767=5723298 44 Bartonella quintana str. Toulouse NC_005955=1581384 42 Rickettsia conorii str. Malish 7 NC_003103=1268755 43 Rickettsia prowazekii str. Madrid E NC_000963=1111523 bactThet_VPI_5482 Bacteroides thetaiotaomicron VPI-5482 chr=6260361,plasmid_p5482=33038 17413 Delftia acidovorans SPH-1 NC_010002=6767514 haemInfl_KW20 Haemophilus influenzae Rd KW20 chr=1830138 brucMeli Brucella melitensis 16M chrII=1177787,chrI=2117144 haloHalo_SL1 Halorhodospira halophila SL1 chr=2678452 pyrAby1 Pyrococcus abyssi GE5 chr=1765118,plasmid_pGT5=3444 mculMari1 Methanoculleus marisnigri JR1 chr=2478101 12554 Borrelia garinii PBi NC_006128=27108,NC_006129=55560,NC_006156=904246 dechArom_RCB Dechloromonas aromatica RCB chr=4501104 stapAure_MU50 Staphylococcus aureus subsp. aureus Mu50 chr=2878529,plasmid_VRSAp=25107 eschColi_K12 Escherichia coli K12 chr=4639675 12416 Pseudomonas syringae pv. phaseolicola 1448A NC_005773=5928787,NC_007275=51711,NC_007274=131950 aeroHydr_ATCC7966 Aeromonas hydrophila subsp. hydrophila ATCC 7966 chr=4744448 baciAnth_AMES Bacillus anthracis str. Ames chr=5227293 shewOnei Shewanella oneidensis MR-1 plasmid_pMR-1=161613,chr=4969803 15217 Human herpesvirus 1 NC_001806=152261 lMaj5 Leishmania major 2005 chr1=268984,chr2=355714,chr3=384518,chr4=441313,chr5=465823,chr6=516874,chr7=596348,chr8=574972,chr9=573441,chr10=570864,chr11=582575,chr12=675347,chr13=654604,chr14=622648,chr15=629514,chr16=714659,chr17=684831,chr18=739751,chr19=702212,chr20=742551,chr21=772974,chr22=716608,chr23=772567,chr24=840950,chr25=912849,chr26=1091579,chr27=1130447,chr28=1160128,chr29=1212674,chr30=1403454,chr31=1484336,chr32=1604650,chr33=1583673,chr34=1866754,chr35=2090491,chr36=2682183 arabidopsis Arabidopsis thaliana TAIR9 arabidopsis_tair8 Arabidopsis thaliana TAIR8 araTha1 Arabidopsis thaliana TAIR7 mm5 Mouse May 2004 (mm5) Sscrofa9.58 Pig May 2010 (SGSC Sscrofa9.58)