# # ChangeLog for /galaxy-central/scripts/scramble/patches/Cheetah/SetupConfig.py # # Generated by Trac 0.11.5.ja1 # 2024/11/09 11:34:24 Fri, 22 Oct 2010 04:23:16 GMT hatakeyama [2] * galaxy-central (追加) * galaxy-central/LICENSE.txt (追加) * galaxy-central/MANIFEST.in (追加) * galaxy-central/Makefile (追加) * galaxy-central/README.txt (追加) * galaxy-central/buildbot_setup.sh (追加) * galaxy-central/community_datatypes_conf.xml.sample (追加) * galaxy-central/community_wsgi.ini.sample (追加) * galaxy-central/contrib (追加) * galaxy-central/contrib/README (追加) * galaxy-central/contrib/edu.psu.galaxy.GalaxyServer.plist (追加) * galaxy-central/contrib/galaxy.debian-init (追加) * galaxy-central/contrib/galaxy.solaris-smf.xml (追加) * galaxy-central/contrib/multiproccess.sh (追加) * galaxy-central/cron (追加) * galaxy-central/cron/README.txt (追加) * galaxy-central/cron/add_manual_builds.py (追加) * galaxy-central/cron/build_chrom_db.py (追加) * galaxy-central/cron/check_galaxy.sh (追加) * galaxy-central/cron/cleanup_datasets.py (追加) * galaxy-central/cron/parse_builds.py (追加) * galaxy-central/cron/parse_builds_3_sites.py (追加) * galaxy-central/cron/updateucsc.sh.sample (追加) * galaxy-central/database (追加) * galaxy-central/database/info.txt (追加) * galaxy-central/datatypes_conf.xml.sample (追加) * galaxy-central/display_applications (追加) * galaxy-central/display_applications/ensembl (追加) * galaxy-central/display_applications/ensembl/ensembl_bam.xml (追加) * galaxy-central/display_applications/ensembl/ensembl_gff.xml (追加) * galaxy-central/display_applications/ensembl/ensembl_interval_as_bed.xml (追加) * galaxy-central/display_applications/gbrowse (追加) * galaxy-central/display_applications/gbrowse/gbrowse_gff.xml (追加) * galaxy-central/display_applications/gbrowse/gbrowse_interval_as_bed.xml (追加) * galaxy-central/display_applications/gbrowse/gbrowse_wig.xml (追加) * galaxy-central/display_applications/genetrack.xml (追加) * galaxy-central/display_applications/ucsc (追加) * galaxy-central/display_applications/ucsc/bam.xml (追加) * galaxy-central/display_applications/ucsc/bigbed.xml (追加) * galaxy-central/display_applications/ucsc/bigwig.xml (追加) * galaxy-central/display_applications/ucsc/interval_as_bed.xml (追加) * galaxy-central/display_applications/ucsc/maf_customtrack.xml (追加) * galaxy-central/dist-eggs.ini (追加) * galaxy-central/eggs.ini (追加) * galaxy-central/lib (追加) * galaxy-central/lib/fpconst.py (追加) * galaxy-central/lib/galaxy (追加) * galaxy-central/lib/galaxy/__init__.py (追加) * galaxy-central/lib/galaxy/app.py (追加) * galaxy-central/lib/galaxy/config.py (追加) * galaxy-central/lib/galaxy/datatypes (追加) * galaxy-central/lib/galaxy/datatypes/__init__.py (追加) * galaxy-central/lib/galaxy/datatypes/assembly.py (追加) * galaxy-central/lib/galaxy/datatypes/binary.py (追加) * galaxy-central/lib/galaxy/datatypes/chrominfo.py (追加) * galaxy-central/lib/galaxy/datatypes/converters (追加) * galaxy-central/lib/galaxy/datatypes/converters/bam_to_bai.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_genetrack_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_genetrack_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_gff_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bed_to_summary_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/gff_to_bed_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/gff_to_summary_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bed_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_coverage.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_coverage.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/interval_to_summary_tree_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/lped_to_fped_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/maf_to_interval_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py (追加) * galaxy-central/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml (追加) * galaxy-central/lib/galaxy/datatypes/coverage.py (追加) * galaxy-central/lib/galaxy/datatypes/data.py (追加) * galaxy-central/lib/galaxy/datatypes/display_applications (追加) * galaxy-central/lib/galaxy/datatypes/display_applications/__init__.py (追加) * galaxy-central/lib/galaxy/datatypes/display_applications/application.py (追加) * galaxy-central/lib/galaxy/datatypes/display_applications/parameters.py (追加) * galaxy-central/lib/galaxy/datatypes/display_applications/util.py (追加) * galaxy-central/lib/galaxy/datatypes/genetics.py (追加) * galaxy-central/lib/galaxy/datatypes/images.py (追加) * galaxy-central/lib/galaxy/datatypes/indexers (追加) * galaxy-central/lib/galaxy/datatypes/indexers/coverage.py (追加) * galaxy-central/lib/galaxy/datatypes/indexers/coverage.xml (追加) * galaxy-central/lib/galaxy/datatypes/indexers/interval.awk (追加) * galaxy-central/lib/galaxy/datatypes/indexers/interval.py (追加) * galaxy-central/lib/galaxy/datatypes/indexers/interval.xml (追加) * galaxy-central/lib/galaxy/datatypes/indexers/interval_awk.xml (追加) * galaxy-central/lib/galaxy/datatypes/indexers/wiggle.py (追加) * galaxy-central/lib/galaxy/datatypes/indexers/wiggle.xml (追加) * galaxy-central/lib/galaxy/datatypes/interval.py (追加) * galaxy-central/lib/galaxy/datatypes/metadata.py (追加) * galaxy-central/lib/galaxy/datatypes/ngsindex.py (追加) * galaxy-central/lib/galaxy/datatypes/qualityscore.py (追加) * galaxy-central/lib/galaxy/datatypes/registry.py (追加) * galaxy-central/lib/galaxy/datatypes/sequence.py (追加) * galaxy-central/lib/galaxy/datatypes/sniff.py (追加) * galaxy-central/lib/galaxy/datatypes/tabular.py (追加) * galaxy-central/lib/galaxy/datatypes/test (追加) * galaxy-central/lib/galaxy/datatypes/test/1.bam (追加) * galaxy-central/lib/galaxy/datatypes/test/1.bed (追加) * galaxy-central/lib/galaxy/datatypes/test/1.fastq (追加) * galaxy-central/lib/galaxy/datatypes/test/1.fastqsanger (追加) * galaxy-central/lib/galaxy/datatypes/test/1.fastqsolexa (追加) * galaxy-central/lib/galaxy/datatypes/test/1.sam (追加) * galaxy-central/lib/galaxy/datatypes/test/1.sff (追加) * galaxy-central/lib/galaxy/datatypes/test/10col.pileup (追加) * galaxy-central/lib/galaxy/datatypes/test/2.fastq (追加) * galaxy-central/lib/galaxy/datatypes/test/2.fastqsanger (追加) * galaxy-central/lib/galaxy/datatypes/test/2.fastqsolexa (追加) * galaxy-central/lib/galaxy/datatypes/test/3.bam (追加) * galaxy-central/lib/galaxy/datatypes/test/4.bed (追加) * galaxy-central/lib/galaxy/datatypes/test/6col.pileup (追加) * galaxy-central/lib/galaxy/datatypes/test/alignment.axt (追加) * galaxy-central/lib/galaxy/datatypes/test/alignment.lav (追加) * galaxy-central/lib/galaxy/datatypes/test/complete.bed (追加) * galaxy-central/lib/galaxy/datatypes/test/file.html (追加) * galaxy-central/lib/galaxy/datatypes/test/gff_version_3.gff (追加) * galaxy-central/lib/galaxy/datatypes/test/interval.interval (追加) * galaxy-central/lib/galaxy/datatypes/test/interval1.bed (追加) * galaxy-central/lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.csfasta (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.fasta (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.maf (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.qual (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.qual454 (追加) * galaxy-central/lib/galaxy/datatypes/test/sequence.qualsolid (追加) * galaxy-central/lib/galaxy/datatypes/test/temp.txt (追加) * galaxy-central/lib/galaxy/datatypes/test/test.gff (追加) * galaxy-central/lib/galaxy/datatypes/test/test.gtf (追加) * galaxy-central/lib/galaxy/datatypes/test/test_ensembl.tab (追加) * galaxy-central/lib/galaxy/datatypes/test/test_space.txt (追加) * galaxy-central/lib/galaxy/datatypes/test/test_tab.bed (追加) * galaxy-central/lib/galaxy/datatypes/test/test_tab1.tabular (追加) * galaxy-central/lib/galaxy/datatypes/test/ucsc.customtrack (追加) * galaxy-central/lib/galaxy/datatypes/test/wiggle.wig (追加) * galaxy-central/lib/galaxy/datatypes/tracks.py (追加) * galaxy-central/lib/galaxy/datatypes/xml.py (追加) * galaxy-central/lib/galaxy/eggs (追加) * galaxy-central/lib/galaxy/eggs/__init__.py (追加) * galaxy-central/lib/galaxy/eggs/dist.py (追加) * galaxy-central/lib/galaxy/eggs/scramble.py (追加) * galaxy-central/lib/galaxy/jobs (追加) * galaxy-central/lib/galaxy/jobs/__init__.py (追加) * galaxy-central/lib/galaxy/jobs/actions (追加) * galaxy-central/lib/galaxy/jobs/actions/__init__.py (追加) * galaxy-central/lib/galaxy/jobs/actions/post.py (追加) * galaxy-central/lib/galaxy/jobs/runners (追加) * galaxy-central/lib/galaxy/jobs/runners/__init__.py (追加) * galaxy-central/lib/galaxy/jobs/runners/drmaa.py (追加) * galaxy-central/lib/galaxy/jobs/runners/local.py (追加) * galaxy-central/lib/galaxy/jobs/runners/pbs.py (追加) * galaxy-central/lib/galaxy/jobs/runners/sge.py (追加) * galaxy-central/lib/galaxy/model (追加) * galaxy-central/lib/galaxy/model/__init__.py (追加) * galaxy-central/lib/galaxy/model/custom_types.py (追加) * galaxy-central/lib/galaxy/model/item_attrs.py (追加) * galaxy-central/lib/galaxy/model/mapping.py (追加) * galaxy-central/lib/galaxy/model/mapping_tests.py (追加) * galaxy-central/lib/galaxy/model/migrate (追加) * galaxy-central/lib/galaxy/model/migrate/__init__.py (追加) * galaxy-central/lib/galaxy/model/migrate/check.py (追加) * galaxy-central/lib/galaxy/model/migrate/migrate.cfg (追加) * galaxy-central/lib/galaxy/model/migrate/versions (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0001_initial_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0002_metadata_file_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0003_security_and_libraries.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0004_indexes_and_defaults.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0006_change_qual_datatype.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0007_sharing_histories.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0008_galaxy_forms.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0009_request_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0010_hda_display_at_authz_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0012_user_address.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0013_change_lib_item_templates_to_forms.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0014_pages.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0015_tagging.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0016_v0015_mysql_index_fix.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0017_library_item_indexes.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0018_ordered_tags_and_page_tags.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0019_request_library_folder.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0020_library_upload_job.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0021_user_prefs.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0022_visualization_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0023_page_published_and_deleted_columns.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0024_page_slug_unique_constraint.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0025_user_info.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0026_cloud_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0027_request_events.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0028_external_metadata_file_override.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0029_user_actions.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0030_history_slug_column.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0031_community_and_workflow_tags.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0032_stored_workflow_slug_column.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0033_published_cols_for_histories_and_workflows.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0034_page_user_share_association.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0035_item_annotations_and_workflow_step_tags.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0036_add_deleted_column_to_library_template_assoc_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0037_samples_library.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0038_add_inheritable_column_to_library_template_assoc_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0039_add_synopsis_column_to_library_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0040_page_annotations.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0041_workflow_invocation.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0042_workflow_invocation_fix.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0043_visualization_sharing_tagging_annotating.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0044_add_notify_column_to_request_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0045_request_type_permissions_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0046_post_job_actions.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0047_job_table_user_id_column.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0048_dataset_instance_state_column.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0049_api_keys_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0050_drop_cloud_tables.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0051_imported_col_for_jobs_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0052_sample_dataset_table.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0053_item_ratings.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0054_visualization_dbkey.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0055_add_pja_assoc_for_jobs.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0056_workflow_outputs.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0057_request_notify.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0058_history_import_export.py (追加) * galaxy-central/lib/galaxy/model/migrate/versions/0059_sample_dataset_file_path.py (追加) * galaxy-central/lib/galaxy/model/orm (追加) * galaxy-central/lib/galaxy/model/orm/__init__.py (追加) * galaxy-central/lib/galaxy/model/orm/ext (追加) * galaxy-central/lib/galaxy/model/orm/ext/__init__.py (追加) * galaxy-central/lib/galaxy/model/orm/ext/assignmapper.py (追加) * galaxy-central/lib/galaxy/model/orm/logging_connection_proxy.py (追加) * galaxy-central/lib/galaxy/security (追加) * galaxy-central/lib/galaxy/security/__init__.py (追加) * galaxy-central/lib/galaxy/tags (追加) * galaxy-central/lib/galaxy/tags/__init__.py (追加) * galaxy-central/lib/galaxy/tags/tag_handler.py (追加) * galaxy-central/lib/galaxy/tools (追加) * galaxy-central/lib/galaxy/tools/__init__.py (追加) * galaxy-central/lib/galaxy/tools/actions (追加) * galaxy-central/lib/galaxy/tools/actions/__init__.py (追加) * galaxy-central/lib/galaxy/tools/actions/history_imp_exp.py (追加) * galaxy-central/lib/galaxy/tools/actions/metadata.py (追加) * galaxy-central/lib/galaxy/tools/actions/upload.py (追加) * galaxy-central/lib/galaxy/tools/actions/upload_common.py (追加) * galaxy-central/lib/galaxy/tools/data (追加) * galaxy-central/lib/galaxy/tools/data/__init__.py (追加) * galaxy-central/lib/galaxy/tools/deps (追加) * galaxy-central/lib/galaxy/tools/deps/__init__.py (追加) * galaxy-central/lib/galaxy/tools/deps/tests.py (追加) * galaxy-central/lib/galaxy/tools/exception_handling.py (追加) * galaxy-central/lib/galaxy/tools/imp_exp (追加) * galaxy-central/lib/galaxy/tools/imp_exp/__init__.py (追加) * galaxy-central/lib/galaxy/tools/imp_exp/export_history.py (追加) * galaxy-central/lib/galaxy/tools/parameters (追加) * 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galaxy-central/templates/genetrack/invalid.html (追加) * galaxy-central/templates/genetrack/search.html (追加) * galaxy-central/templates/grid_base.mako (追加) * galaxy-central/templates/grid_base_async.mako (追加) * galaxy-central/templates/grid_common.mako (追加) * galaxy-central/templates/history (追加) * galaxy-central/templates/history/clone.mako (追加) * galaxy-central/templates/history/display.mako (追加) * galaxy-central/templates/history/display_structured.mako (追加) * galaxy-central/templates/history/embed.mako (追加) * galaxy-central/templates/history/grid.mako (追加) * galaxy-central/templates/history/item_content.mako (追加) * galaxy-central/templates/history/list_as_xml.mako (追加) * galaxy-central/templates/history/list_published.mako (追加) * galaxy-central/templates/history/options.mako (追加) * galaxy-central/templates/history/permissions.mako (追加) * galaxy-central/templates/history/rename.mako (追加) * galaxy-central/templates/history/share.mako (追加) * galaxy-central/templates/history/view.mako (追加) * galaxy-central/templates/ind_share_base.mako (追加) * galaxy-central/templates/library (追加) * galaxy-central/templates/library/common (追加) * galaxy-central/templates/library/common/browse_library.mako (追加) * galaxy-central/templates/library/common/common.mako (追加) * galaxy-central/templates/library/common/edit_template.mako (追加) * galaxy-central/templates/library/common/folder_info.mako (追加) * galaxy-central/templates/library/common/folder_permissions.mako (追加) * galaxy-central/templates/library/common/ldda_edit_info.mako (追加) * galaxy-central/templates/library/common/ldda_info.mako (追加) * galaxy-central/templates/library/common/ldda_permissions.mako (追加) * galaxy-central/templates/library/common/library_dataset_info.mako (追加) * galaxy-central/templates/library/common/library_dataset_permissions.mako (追加) * galaxy-central/templates/library/common/library_info.mako (追加) * galaxy-central/templates/library/common/library_item_info.mako (追加) * galaxy-central/templates/library/common/library_permissions.mako (追加) * galaxy-central/templates/library/common/new_folder.mako (追加) * galaxy-central/templates/library/common/select_template.mako (追加) * galaxy-central/templates/library/common/upload.mako (追加) * galaxy-central/templates/library/grid.mako (追加) * galaxy-central/templates/library/index.mako (追加) * galaxy-central/templates/message.mako (追加) * galaxy-central/templates/mobile (追加) * galaxy-central/templates/mobile/dataset (追加) * galaxy-central/templates/mobile/dataset/detail.mako (追加) * galaxy-central/templates/mobile/dataset/peek.mako (追加) * galaxy-central/templates/mobile/form.mako (追加) * galaxy-central/templates/mobile/history (追加) * galaxy-central/templates/mobile/history/detail.mako (追加) * galaxy-central/templates/mobile/history/list.mako (追加) * galaxy-central/templates/mobile/index.mako (追加) * galaxy-central/templates/mobile/manage_library.mako (追加) * galaxy-central/templates/mobile/settings.mako (追加) * galaxy-central/templates/no_access.mako (追加) * galaxy-central/templates/page (追加) * galaxy-central/templates/page/create.mako (追加) * galaxy-central/templates/page/display.mako (追加) * galaxy-central/templates/page/editor.mako (追加) * galaxy-central/templates/page/history_annotation_table.mako (追加) * galaxy-central/templates/page/index.mako (追加) * galaxy-central/templates/page/list_published.mako (追加) * galaxy-central/templates/page/select_items_grid.mako (追加) * galaxy-central/templates/page/select_items_grid_async.mako (追加) * galaxy-central/templates/page/wymiframe.mako (追加) * galaxy-central/templates/panels.mako (追加) * galaxy-central/templates/requests (追加) * galaxy-central/templates/requests/common (追加) * galaxy-central/templates/requests/common/create_request.mako (追加) * galaxy-central/templates/requests/common/dataset_transfer.mako (追加) * galaxy-central/templates/requests/common/edit_basic_request_info.mako (追加) * galaxy-central/templates/requests/common/events.mako (追加) * galaxy-central/templates/requests/common/find_samples.mako (追加) * galaxy-central/templates/requests/common/index.mako (追加) * galaxy-central/templates/requests/common/manage_request.mako (追加) * galaxy-central/templates/requests/common/sample_datasets.mako (追加) * galaxy-central/templates/requests/common/sample_events.mako (追加) * galaxy-central/templates/requests/common/sample_state.mako (追加) * galaxy-central/templates/requests/find_samples_index.mako (追加) * galaxy-central/templates/requests/grid.mako (追加) * galaxy-central/templates/requests/index.mako (追加) * galaxy-central/templates/root (追加) * galaxy-central/templates/root/history.mako (追加) * galaxy-central/templates/root/history_as_xml.mako (追加) * galaxy-central/templates/root/history_common.mako (追加) * galaxy-central/templates/root/history_item.mako (追加) * galaxy-central/templates/root/index.mako (追加) * galaxy-central/templates/root/redirect.mako (追加) * galaxy-central/templates/root/tool_menu.mako (追加) * galaxy-central/templates/sharing_base.mako (追加) * galaxy-central/templates/tagging_common.mako (追加) * galaxy-central/templates/tool_executed.mako (追加) * galaxy-central/templates/tool_form.mako (追加) * galaxy-central/templates/tracks (追加) * galaxy-central/templates/tracks/add_to_viz.mako (追加) * galaxy-central/templates/tracks/add_tracks.mako (追加) * galaxy-central/templates/tracks/browser.mako (追加) * galaxy-central/templates/tracks/index.mako (追加) * galaxy-central/templates/tracks/new_browser.mako (追加) * galaxy-central/templates/user (追加) * galaxy-central/templates/user/dbkeys.mako (追加) * galaxy-central/templates/user/edit_address.mako (追加) * galaxy-central/templates/user/index.mako (追加) * galaxy-central/templates/user/info.mako (追加) * galaxy-central/templates/user/login.mako (追加) * galaxy-central/templates/user/logout.mako (追加) * galaxy-central/templates/user/new_address.mako (追加) * galaxy-central/templates/user/permissions.mako (追加) * galaxy-central/templates/user/register.mako (追加) * galaxy-central/templates/user/reset_password.mako (追加) * galaxy-central/templates/visualization (追加) * galaxy-central/templates/visualization/create.mako (追加) * galaxy-central/templates/visualization/display.mako (追加) * galaxy-central/templates/visualization/embed.mako (追加) * galaxy-central/templates/visualization/item_content.mako (追加) * galaxy-central/templates/visualization/list.mako (追加) * galaxy-central/templates/visualization/list_published.mako (追加) * galaxy-central/templates/webapps (追加) * galaxy-central/templates/webapps/community (追加) * galaxy-central/templates/webapps/community/admin (追加) * galaxy-central/templates/webapps/community/admin/center.mako (追加) * galaxy-central/templates/webapps/community/admin/index.mako (追加) * galaxy-central/templates/webapps/community/admin/reject_tool.mako (追加) * galaxy-central/templates/webapps/community/base_panels.mako (追加) * galaxy-central/templates/webapps/community/category (追加) * galaxy-central/templates/webapps/community/category/create_category.mako (追加) * galaxy-central/templates/webapps/community/category/edit_category.mako (追加) * galaxy-central/templates/webapps/community/category/grid.mako (追加) * galaxy-central/templates/webapps/community/common (追加) * galaxy-central/templates/webapps/community/common/common.mako (追加) * galaxy-central/templates/webapps/community/common/rate_tool.mako (追加) * galaxy-central/templates/webapps/community/common/view_tool_history.mako (追加) * galaxy-central/templates/webapps/community/index.mako (追加) * galaxy-central/templates/webapps/community/message.mako (追加) * galaxy-central/templates/webapps/community/tool (追加) * galaxy-central/templates/webapps/community/tool/edit_tool.mako (追加) * galaxy-central/templates/webapps/community/tool/grid.mako (追加) * galaxy-central/templates/webapps/community/tool/help.mako (追加) * galaxy-central/templates/webapps/community/tool/view_tool.mako (追加) * galaxy-central/templates/webapps/community/upload (追加) * galaxy-central/templates/webapps/community/upload/upload.mako (追加) * galaxy-central/templates/webapps/community/user (追加) * galaxy-central/templates/webapps/community/user/info.mako (追加) * galaxy-central/templates/webapps/galaxy (追加) * galaxy-central/templates/webapps/galaxy/admin (追加) * galaxy-central/templates/webapps/galaxy/admin/center.mako (追加) * galaxy-central/templates/webapps/galaxy/admin/index.mako (追加) * galaxy-central/templates/webapps/galaxy/base_panels.mako (追加) * galaxy-central/templates/webapps/galaxy/user (追加) * galaxy-central/templates/webapps/galaxy/user/api_keys.mako (追加) * galaxy-central/templates/webapps/galaxy/user/info.mako (追加) * galaxy-central/templates/webapps/reports (追加) * galaxy-central/templates/webapps/reports/base_panels.mako (追加) * galaxy-central/templates/webapps/reports/dataset_info.mako (追加) * galaxy-central/templates/webapps/reports/grid.mako (追加) * galaxy-central/templates/webapps/reports/index.mako (追加) * galaxy-central/templates/webapps/reports/job_info.mako (追加) * galaxy-central/templates/webapps/reports/jobs_per_domain.mako (追加) * galaxy-central/templates/webapps/reports/jobs_per_month_all.mako (追加) * galaxy-central/templates/webapps/reports/jobs_per_month_in_error.mako (追加) * galaxy-central/templates/webapps/reports/jobs_per_tool.mako (追加) * galaxy-central/templates/webapps/reports/jobs_per_user.mako (追加) * galaxy-central/templates/webapps/reports/jobs_specified_month_all.mako (追加) * galaxy-central/templates/webapps/reports/jobs_specified_month_in_error.mako (追加) * galaxy-central/templates/webapps/reports/jobs_tool_per_month.mako (追加) * galaxy-central/templates/webapps/reports/jobs_user_per_month.mako (追加) * galaxy-central/templates/webapps/reports/registered_users.mako (追加) * galaxy-central/templates/webapps/reports/registered_users_per_month.mako (追加) * galaxy-central/templates/webapps/reports/registered_users_specified_date.mako (追加) * galaxy-central/templates/webapps/reports/registered_users_specified_month.mako (追加) * galaxy-central/templates/webapps/reports/system.mako (追加) * galaxy-central/templates/webapps/reports/users_last_access_date.mako (追加) * galaxy-central/templates/workflow (追加) * galaxy-central/templates/workflow/build_from_current_history.mako (追加) * galaxy-central/templates/workflow/configure_menu.mako (追加) * galaxy-central/templates/workflow/display.mako (追加) * galaxy-central/templates/workflow/edit_attributes.mako (追加) * galaxy-central/templates/workflow/editor.mako (追加) * galaxy-central/templates/workflow/editor_generic_form.mako (追加) * galaxy-central/templates/workflow/editor_tool_form.mako (追加) * galaxy-central/templates/workflow/embed.mako (追加) * galaxy-central/templates/workflow/export.mako (追加) * galaxy-central/templates/workflow/index.mako (追加) * galaxy-central/templates/workflow/item_content.mako (追加) * galaxy-central/templates/workflow/list.mako (追加) * galaxy-central/templates/workflow/list_for_run.mako (追加) * galaxy-central/templates/workflow/list_published.mako (追加) * galaxy-central/templates/workflow/myexp_export.mako (追加) * galaxy-central/templates/workflow/myexp_export_content.mako (追加) * galaxy-central/templates/workflow/rename.mako (追加) * galaxy-central/templates/workflow/run.mako (追加) * galaxy-central/templates/workflow/run_complete.mako (追加) * galaxy-central/templates/workflow/sharing.mako (追加) * galaxy-central/test (追加) * galaxy-central/test-data (追加) * galaxy-central/test-data/1.axt (追加) * galaxy-central/test-data/1.bam (追加) * galaxy-central/test-data/1.bed (追加) * galaxy-central/test-data/1.bed.spaces (追加) * galaxy-central/test-data/1.bigbed (追加) * galaxy-central/test-data/1.bigwig (追加) * galaxy-central/test-data/1.customtrack (追加) * galaxy-central/test-data/1.fasta (追加) * galaxy-central/test-data/1.fastq (追加) * galaxy-central/test-data/1.fastqsanger (追加) * galaxy-central/test-data/1.fastqsolexa (追加) * galaxy-central/test-data/1.interval (追加) * galaxy-central/test-data/1.lav (追加) * galaxy-central/test-data/1.pileup (追加) * galaxy-central/test-data/1.sam (追加) * galaxy-central/test-data/1.scf (追加) * galaxy-central/test-data/1.sff (追加) * galaxy-central/test-data/1.tabular (追加) * galaxy-central/test-data/1.txt (追加) * galaxy-central/test-data/1.wig (追加) * galaxy-central/test-data/10.bed (追加) * galaxy-central/test-data/11.bed (追加) * galaxy-central/test-data/12.bed (追加) * galaxy-central/test-data/13.bed (追加) * galaxy-central/test-data/2.bed (追加) * galaxy-central/test-data/2.bigwig (追加) * galaxy-central/test-data/2.fasta (追加) * galaxy-central/test-data/2.fastq (追加) * galaxy-central/test-data/2.fastqsanger (追加) * galaxy-central/test-data/2.fastqsolexa (追加) * galaxy-central/test-data/2.interval (追加) * galaxy-central/test-data/2.lav (追加) * galaxy-central/test-data/2.pep (追加) * galaxy-central/test-data/2.sam (追加) * galaxy-central/test-data/2.sff (追加) * galaxy-central/test-data/2.tabular (追加) * galaxy-central/test-data/2.txt (追加) * galaxy-central/test-data/2.wig (追加) * galaxy-central/test-data/2_mod.bed (追加) * galaxy-central/test-data/2gen.fastq (追加) * galaxy-central/test-data/2way.maf (追加) * galaxy-central/test-data/3.bam (追加) * galaxy-central/test-data/3.bed (追加) * galaxy-central/test-data/3.fasta (追加) * galaxy-central/test-data/3.fastqsanger (追加) * galaxy-central/test-data/3.maf (追加) * galaxy-central/test-data/3.sam (追加) * galaxy-central/test-data/3.wig (追加) * galaxy-central/test-data/3_wig.bed (追加) * galaxy-central/test-data/3way.maf (追加) * galaxy-central/test-data/4.bed (追加) * galaxy-central/test-data/4.bed.bz2 (追加) * galaxy-central/test-data/4.bed.gz (追加) * galaxy-central/test-data/4.bed.zip (追加) * galaxy-central/test-data/4.fasta (追加) * galaxy-central/test-data/4.maf (追加) * galaxy-central/test-data/454.fasta (追加) * galaxy-central/test-data/454.qual (追加) * galaxy-central/test-data/454Length.txt (追加) * galaxy-central/test-data/454Score.pdf (追加) * galaxy-central/test-data/454Score.png (追加) * galaxy-central/test-data/454_high_quality_hist.pdf (追加) * galaxy-central/test-data/4_windows.bed (追加) * galaxy-central/test-data/4_windows.gff (追加) * galaxy-central/test-data/4_windows_2.bed (追加) * galaxy-central/test-data/4_windows_2.gff (追加) * galaxy-central/test-data/5.bed (追加) * galaxy-central/test-data/5.gff (追加) * galaxy-central/test-data/5.gff3 (追加) * galaxy-central/test-data/5.maf (追加) * galaxy-central/test-data/5_liftover_mapped.bed (追加) * galaxy-central/test-data/5_liftover_unmapped.bed (追加) * galaxy-central/test-data/6.bed (追加) * galaxy-central/test-data/6.maf (追加) * galaxy-central/test-data/6_feature_coverage.bed (追加) * galaxy-central/test-data/6_indels.tabular (追加) * galaxy-central/test-data/6_mask_cpg.maf (追加) * galaxy-central/test-data/6_mask_noncpg.maf (追加) * galaxy-central/test-data/6_quality_filter.maf (追加) * galaxy-central/test-data/7.bed (追加) * galaxy-central/test-data/8.bed (追加) * galaxy-central/test-data/8.tabular (追加) * galaxy-central/test-data/9.bed (追加) * galaxy-central/test-data/9_hg18.bed (追加) * galaxy-central/test-data/DNAseHSS.dat (追加) * galaxy-central/test-data/Extract_features1_out.gff (追加) * galaxy-central/test-data/Interval2Maf_pairwise_out.maf (追加) * galaxy-central/test-data/Ssuis.fasta (追加) * galaxy-central/test-data/XY_Plot_1_out.pdf (追加) * galaxy-central/test-data/a.tab (追加) * galaxy-central/test-data/a.txt (追加) * galaxy-central/test-data/add_scores_input1.interval (追加) * galaxy-central/test-data/add_scores_input2.bed (追加) * galaxy-central/test-data/add_scores_output1.interval (追加) * galaxy-central/test-data/add_scores_output2.interval (追加) * galaxy-central/test-data/aggregate_binned_scores_3.wig (追加) * galaxy-central/test-data/aggregate_binned_scores_in_intervals.bed (追加) * galaxy-central/test-data/aggregate_binned_scores_in_intervals.out (追加) * galaxy-central/test-data/aggregate_binned_scores_in_intervals2.interval (追加) * galaxy-central/test-data/aggregate_binned_scores_in_intervals3.out (追加) * galaxy-central/test-data/annotation_profiler_1.out (追加) * galaxy-central/test-data/annotation_profiler_2.out (追加) * galaxy-central/test-data/asian_chars_1.txt (追加) * galaxy-central/test-data/axt_to_concat_fasta.dat (追加) * galaxy-central/test-data/axt_to_fasta.dat (追加) * galaxy-central/test-data/b1.fasta (追加) * galaxy-central/test-data/bam_to_sam_out1.sam (追加) * galaxy-central/test-data/bam_to_sam_out2.sam (追加) * galaxy-central/test-data/beam_output1.tab (追加) * galaxy-central/test-data/beam_output2.tab (追加) * galaxy-central/test-data/bed2gff_out.gff (追加) * galaxy-central/test-data/bfast_out1.sam (追加) * galaxy-central/test-data/bfast_out2.sam (追加) * galaxy-central/test-data/blat_coverage_report_test1.out (追加) * galaxy-central/test-data/blat_coverage_report_test1.txt (追加) * galaxy-central/test-data/blat_mapping_test1.out (追加) * galaxy-central/test-data/blat_mapping_test1.txt (追加) * galaxy-central/test-data/blat_wrapper_test1.fa (追加) * galaxy-central/test-data/blat_wrapper_test1.out (追加) * galaxy-central/test-data/bowtie_in1.fastqcssanger (追加) * galaxy-central/test-data/bowtie_in2.fastqsanger (追加) * galaxy-central/test-data/bowtie_in3.fastqcssanger (追加) * galaxy-central/test-data/bowtie_in4.fastqcssanger (追加) * galaxy-central/test-data/bowtie_in5.fastqsanger (追加) * galaxy-central/test-data/bowtie_in6.fastqsanger (追加) * galaxy-central/test-data/bowtie_out1.sam (追加) * galaxy-central/test-data/bowtie_out2.sam (追加) * galaxy-central/test-data/bowtie_out3.sam (追加) * galaxy-central/test-data/bowtie_out4.sam (追加) * galaxy-central/test-data/bowtie_out5.sam (追加) * galaxy-central/test-data/bowtie_out6.sam (追加) * galaxy-central/test-data/bowtie_out7.sam (追加) * galaxy-central/test-data/bowtie_out8.sam (追加) * galaxy-central/test-data/boxplot_summary_statistics_out.png (追加) * galaxy-central/test-data/branchlength_fasta_in.dat (追加) * galaxy-central/test-data/branchlength_in.fasta (追加) * galaxy-central/test-data/branchlength_out.dat (追加) * galaxy-central/test-data/branchlength_out.tabular (追加) * galaxy-central/test-data/build_ucsc_custom_track_out1.customtrack (追加) * galaxy-central/test-data/bwa_wrapper_in1.fastq (追加) * galaxy-central/test-data/bwa_wrapper_in2.fastq (追加) * galaxy-central/test-data/bwa_wrapper_in3.fastq (追加) * galaxy-central/test-data/bwa_wrapper_out1.sam (追加) * galaxy-central/test-data/bwa_wrapper_out2.sam (追加) * galaxy-central/test-data/bwa_wrapper_out3.sam (追加) * galaxy-central/test-data/cat_wrapper_out1.bed (追加) * galaxy-central/test-data/categories.tabular (追加) * galaxy-central/test-data/categories_criteria.tabular (追加) * galaxy-central/test-data/categorized_elements.tabular (追加) * galaxy-central/test-data/cc.EarlyRepSeg.20051216.bed (追加) * galaxy-central/test-data/cca_out1.tabular (追加) * galaxy-central/test-data/cca_out2.pdf (追加) * galaxy-central/test-data/cf-gene2exon.dat (追加) * galaxy-central/test-data/cf_maf2fasta.dat (追加) * galaxy-central/test-data/cf_maf2fasta_concat.dat (追加) * galaxy-central/test-data/cf_maf2fasta_new.dat (追加) * galaxy-central/test-data/cf_maf_limit_to_species.dat (追加) * galaxy-central/test-data/cf_maf_to_bed.dat (追加) * galaxy-central/test-data/changeCase_out1.tabular (追加) * galaxy-central/test-data/changeCase_out2.tabular (追加) * galaxy-central/test-data/chipseq_enriched.bed.gz (追加) * galaxy-central/test-data/chipseq_input.bed.gz (追加) * galaxy-central/test-data/chrY1.bed (追加) * galaxy-central/test-data/chrY2.bed (追加) * galaxy-central/test-data/chrY_Coverage.bed (追加) * galaxy-central/test-data/chr_m.fasta (追加) * galaxy-central/test-data/closest_features.interval (追加) * galaxy-central/test-data/closest_features_both.gff (追加) * galaxy-central/test-data/closest_features_both2.gff (追加) * galaxy-central/test-data/closest_features_down.interval (追加) * galaxy-central/test-data/closest_features_either.interval (追加) * galaxy-central/test-data/closest_features_up.interval (追加) * galaxy-central/test-data/codingSnps_input1.interval (追加) * galaxy-central/test-data/codingSnps_input2.bed (追加) * galaxy-central/test-data/codingSnps_input2.interval (追加) * galaxy-central/test-data/codingSnps_inputGenes1.bed (追加) * galaxy-central/test-data/codingSnps_inputGenes2.bed (追加) * galaxy-central/test-data/codingSnps_output.interval (追加) * galaxy-central/test-data/codingSnps_output1.interval (追加) * galaxy-central/test-data/codingSnps_output2.interval (追加) * galaxy-central/test-data/column_join_in1.pileup (追加) * galaxy-central/test-data/column_join_in10.pileup (追加) * galaxy-central/test-data/column_join_in11.pileup (追加) * galaxy-central/test-data/column_join_in12.pileup (追加) * galaxy-central/test-data/column_join_in13.tabular (追加) * galaxy-central/test-data/column_join_in14.tabular (追加) * galaxy-central/test-data/column_join_in15.tabular (追加) * galaxy-central/test-data/column_join_in2.pileup (追加) * galaxy-central/test-data/column_join_in3.pileup (追加) * galaxy-central/test-data/column_join_in4.pileup (追加) * galaxy-central/test-data/column_join_in5.pileup (追加) * galaxy-central/test-data/column_join_in6.pileup (追加) * galaxy-central/test-data/column_join_in7.pileup (追加) * galaxy-central/test-data/column_join_in8.pileup (追加) * galaxy-central/test-data/column_join_in9.pileup (追加) * galaxy-central/test-data/column_join_out1.pileup (追加) * galaxy-central/test-data/column_join_out2.pileup (追加) * galaxy-central/test-data/column_join_out3.pileup (追加) * galaxy-central/test-data/column_join_out4.pileup (追加) * galaxy-central/test-data/column_join_out5.tabular (追加) * galaxy-central/test-data/column_maker_out1.interval (追加) * galaxy-central/test-data/column_maker_out2.interval (追加) * galaxy-central/test-data/column_maker_out3.interval (追加) * galaxy-central/test-data/combine_phiX_out_1.fastqcssanger (追加) * galaxy-central/test-data/combine_phiX_out_2.fastqcssanger (追加) * galaxy-central/test-data/convert_SOLiD_color2nuc_test1.out (追加) * galaxy-central/test-data/convert_SOLiD_color2nuc_test1.txt (追加) * galaxy-central/test-data/cor.tabular (追加) * galaxy-central/test-data/cor_out.txt (追加) * galaxy-central/test-data/criteria_elements_data.tabular (追加) * galaxy-central/test-data/ctdBatchInput.txt (追加) * galaxy-central/test-data/ctdBatchOut.txt (追加) * galaxy-central/test-data/cuffcompare_in1.gtf (追加) * galaxy-central/test-data/cuffcompare_in2.gtf (追加) * galaxy-central/test-data/cuffcompare_in3.gtf (追加) * galaxy-central/test-data/cuffcompare_out5.gtf (追加) * galaxy-central/test-data/cuffcompare_out6.tracking (追加) * galaxy-central/test-data/cuffdiff_in1.sam (追加) * galaxy-central/test-data/cuffdiff_in2.sam (追加) * galaxy-central/test-data/cuffdiff_out5.tracking (追加) * galaxy-central/test-data/cufflinks_in.sam (追加) * galaxy-central/test-data/cufflinks_out1.gtf (追加) * galaxy-central/test-data/cufflinks_out2.expr (追加) * galaxy-central/test-data/cufflinks_out3.expr (追加) * galaxy-central/test-data/customTrack1.bed (追加) * galaxy-central/test-data/customTrack2.bed (追加) * galaxy-central/test-data/dna_filter_in1.tabular (追加) * galaxy-central/test-data/dna_filter_out1.tabular (追加) * galaxy-central/test-data/dna_filter_out2.tabular (追加) * galaxy-central/test-data/dna_filter_out3.tabular (追加) * galaxy-central/test-data/dna_filter_out4.tabular (追加) * galaxy-central/test-data/dnds_inp.fasta (追加) * galaxy-central/test-data/dnds_out.tabular (追加) * galaxy-central/test-data/droPer1.bed (追加) * galaxy-central/test-data/droPer1.dat (追加) * galaxy-central/test-data/emboss_antigenic_out.tabular (追加) * galaxy-central/test-data/emboss_backtranseq_out.fasta (追加) * galaxy-central/test-data/emboss_banana_out.txt (追加) * galaxy-central/test-data/emboss_biosed_out.fasta (追加) * galaxy-central/test-data/emboss_btwisted_out.btwisted (追加) * galaxy-central/test-data/emboss_cai_out.cai (追加) * galaxy-central/test-data/emboss_charge_out.charge (追加) * galaxy-central/test-data/emboss_chips_out.chips (追加) * galaxy-central/test-data/emboss_codcmp_out.codcmp (追加) * galaxy-central/test-data/emboss_coderet_out.coderet (追加) * galaxy-central/test-data/emboss_compseq_out.compseq (追加) * galaxy-central/test-data/emboss_cpgreport_out1.gff (追加) * galaxy-central/test-data/emboss_cpgreport_out2.cpgreport (追加) * galaxy-central/test-data/emboss_cusp_out.cusp (追加) * galaxy-central/test-data/emboss_cutseq_out.fasta (追加) * galaxy-central/test-data/emboss_dan_out.png (追加) * galaxy-central/test-data/emboss_degapseq_out.fasta (追加) * galaxy-central/test-data/emboss_descseq_out.fasta (追加) * galaxy-central/test-data/emboss_einverted_out.einverted (追加) * galaxy-central/test-data/emboss_epestfind_out.epestfind (追加) * galaxy-central/test-data/emboss_equicktandem_out.equicktandem (追加) * galaxy-central/test-data/emboss_est2genome_out.est2genome (追加) * galaxy-central/test-data/emboss_etandem_out.table (追加) * galaxy-central/test-data/emboss_extractseq_out.fasta (追加) * galaxy-central/test-data/emboss_freak_out.freak 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galaxy-central/test-data/emboss_revseq_out.fasta (追加) * galaxy-central/test-data/emboss_seqmatchall_out.fasta (追加) * galaxy-central/test-data/emboss_seqret_out.fasta (追加) * galaxy-central/test-data/emboss_sigcleave_out.tabular (追加) * galaxy-central/test-data/emboss_sirna_out.fasta (追加) * galaxy-central/test-data/emboss_sixpack_out2.sixpack (追加) * galaxy-central/test-data/emboss_skipseq_out.fasta (追加) * galaxy-central/test-data/emboss_splitter_out.fasta (追加) * galaxy-central/test-data/emboss_supermatcher_out.fasta (追加) * galaxy-central/test-data/emboss_syco_out.syco (追加) * galaxy-central/test-data/emboss_tranalign_out.fasta (追加) * galaxy-central/test-data/emboss_transeq_out.fasta (追加) * galaxy-central/test-data/emboss_trimest_out.fasta (追加) * galaxy-central/test-data/emboss_trimseq_out.fasta (追加) * galaxy-central/test-data/emboss_union_out.fasta (追加) * galaxy-central/test-data/emboss_water_out.fasta (追加) * galaxy-central/test-data/emboss_water_out.score (追加) * galaxy-central/test-data/emboss_wobble_out.png (追加) * galaxy-central/test-data/emboss_wobble_out.wobble (追加) * galaxy-central/test-data/emboss_wordcount_out.wordcount (追加) * galaxy-central/test-data/empty_file.dat (追加) * galaxy-central/test-data/encode_1.bed (追加) * galaxy-central/test-data/eq-addvalue.dat (追加) * galaxy-central/test-data/eq-condense.dat (追加) * galaxy-central/test-data/eq-convert.dat (追加) * galaxy-central/test-data/eq-createinterval.dat (追加) * galaxy-central/test-data/eq-cut.dat (追加) * galaxy-central/test-data/eq-paste.dat (追加) * galaxy-central/test-data/eq-removebeginning.dat (追加) * galaxy-central/test-data/eq-showbeginning.dat (追加) * galaxy-central/test-data/eq-showtail.dat (追加) * galaxy-central/test-data/extract_genomic_dna.fa (追加) * galaxy-central/test-data/extract_genomic_dna_out1.fasta (追加) * galaxy-central/test-data/extract_genomic_dna_out2.fasta (追加) * galaxy-central/test-data/extract_genomic_dna_out3.interval (追加) * galaxy-central/test-data/extract_genomic_dna_out4.gff (追加) * galaxy-central/test-data/extract_genomic_dna_out5.fasta (追加) * galaxy-central/test-data/fasta_collapser1.fasta (追加) * galaxy-central/test-data/fasta_collapser1.out (追加) * galaxy-central/test-data/fasta_concatenate_out.fasta (追加) * galaxy-central/test-data/fasta_formatter1.fasta (追加) * galaxy-central/test-data/fasta_formatter1.out (追加) * galaxy-central/test-data/fasta_formatter2.out (追加) * galaxy-central/test-data/fasta_nuc_changer1.fasta (追加) * galaxy-central/test-data/fasta_nuc_changer1.out (追加) * galaxy-central/test-data/fasta_nuc_changer2.fasta (追加) * galaxy-central/test-data/fasta_nuc_changer2.out (追加) * galaxy-central/test-data/fasta_to_tabular_out1.tabular (追加) * galaxy-central/test-data/fasta_to_tabular_out2.tabular (追加) * galaxy-central/test-data/fasta_to_tabular_out3.tabular (追加) * galaxy-central/test-data/fasta_tool_compute_length_1.out (追加) * galaxy-central/test-data/fasta_tool_compute_length_2.out (追加) * galaxy-central/test-data/fasta_tool_compute_length_3.out (追加) * galaxy-central/test-data/fasta_tool_filter_length_1.out (追加) * galaxy-central/test-data/fastq_combiner_in_1.fasta (追加) * galaxy-central/test-data/fastq_combiner_in_1.qual454 (追加) * galaxy-central/test-data/fastq_combiner_no_qual_ascii_out_1.fastqcssanger (追加) * galaxy-central/test-data/fastq_combiner_no_qual_decimal_out_1.fastqsanger (追加) * galaxy-central/test-data/fastq_conv_in1.fastq (追加) * galaxy-central/test-data/fastq_conv_out1.fastqsanger (追加) * galaxy-central/test-data/fastq_conv_out2.fastqsolexa (追加) * galaxy-central/test-data/fastq_conv_out4.fasta (追加) * galaxy-central/test-data/fastq_gen_conv_in1.fastq (追加) * galaxy-central/test-data/fastq_gen_conv_in2.fastq (追加) * galaxy-central/test-data/fastq_gen_conv_out1.fastqsanger (追加) * galaxy-central/test-data/fastq_gen_conv_out2.fastqsanger (追加) * galaxy-central/test-data/fastq_qual_conv1.fastq (追加) * galaxy-central/test-data/fastq_qual_conv1.out (追加) * 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galaxy-central/test-data/fastq_trimmer_out1.fastqsanger (追加) * galaxy-central/test-data/fastqsolexa_to_fasta_qual_out2.fasta (追加) * galaxy-central/test-data/fastqsolexa_to_fasta_qual_out4.fasta (追加) * galaxy-central/test-data/fastx_artifacts1.fasta (追加) * galaxy-central/test-data/fastx_artifacts1.out (追加) * galaxy-central/test-data/fastx_artifacts2.fastq (追加) * galaxy-central/test-data/fastx_artifacts2.out (追加) * galaxy-central/test-data/fastx_barcode_splitter1.fastq (追加) * galaxy-central/test-data/fastx_barcode_splitter1.out (追加) * galaxy-central/test-data/fastx_barcode_splitter1.txt (追加) * galaxy-central/test-data/fastx_clipper1.fastq (追加) * galaxy-central/test-data/fastx_clipper1a.out (追加) * galaxy-central/test-data/fastx_rev_comp1.fasta (追加) * galaxy-central/test-data/fastx_rev_comp2.fastq (追加) * galaxy-central/test-data/fastx_reverse_complement1.out (追加) * galaxy-central/test-data/fastx_reverse_complement2.out (追加) * galaxy-central/test-data/fastx_trimmer1.fasta (追加) * galaxy-central/test-data/fastx_trimmer1.out (追加) * galaxy-central/test-data/fastx_trimmer2.fastq (追加) * galaxy-central/test-data/fastx_trimmer2.out (追加) * galaxy-central/test-data/filter1_test1.bed (追加) * galaxy-central/test-data/filter1_test2.bed (追加) * galaxy-central/test-data/filteredJoinedFlanksDNAse.dat (追加) * galaxy-central/test-data/find_diag_hits.tabular (追加) * galaxy-central/test-data/flankingSequencesWindows0.tabular (追加) * galaxy-central/test-data/flankingSequencesWindows10.tabular (追加) * galaxy-central/test-data/flankingSequencesWindows10_2.tabular (追加) * galaxy-central/test-data/flanks_inp.bed (追加) * galaxy-central/test-data/flanks_out.bed (追加) * galaxy-central/test-data/flanks_out1.bed (追加) * galaxy-central/test-data/flanks_out2.bed (追加) * galaxy-central/test-data/fr.csfasta (追加) * galaxy-central/test-data/fr.qualsolid (追加) * galaxy-central/test-data/fs-compare-2.dat (追加) * galaxy-central/test-data/fs-compare.dat (追加) * galaxy-central/test-data/fs-grep.dat (追加) * 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galaxy-central/tools/regVariation/microsats_alignment_level.xml (追加) * galaxy-central/tools/regVariation/microsats_mutability.py (追加) * galaxy-central/tools/regVariation/microsats_mutability.xml (追加) * galaxy-central/tools/regVariation/parseMAF_smallIndels.pl (追加) * galaxy-central/tools/regVariation/quality_filter.py (追加) * galaxy-central/tools/regVariation/quality_filter.xml (追加) * galaxy-central/tools/regVariation/qv_to_bqv.py (追加) * galaxy-central/tools/regVariation/qv_to_bqv.xml (追加) * galaxy-central/tools/regVariation/rcve.py (追加) * galaxy-central/tools/regVariation/rcve.xml (追加) * galaxy-central/tools/regVariation/substitution_rates.py (追加) * galaxy-central/tools/regVariation/substitution_rates.xml (追加) * galaxy-central/tools/regVariation/substitutions.py (追加) * galaxy-central/tools/regVariation/substitutions.xml (追加) * galaxy-central/tools/regVariation/t_test_two_samples.pl (追加) * galaxy-central/tools/regVariation/t_test_two_samples.xml (追加) * galaxy-central/tools/regVariation/windowSplitter.py (追加) * galaxy-central/tools/regVariation/windowSplitter.xml (追加) * galaxy-central/tools/rgenetics (追加) * galaxy-central/tools/rgenetics/listFiles.py (追加) * galaxy-central/tools/rgenetics/plinkbinJZ.py (追加) * galaxy-central/tools/rgenetics/rgCaCo.py (追加) * galaxy-central/tools/rgenetics/rgCaCo.xml (追加) * galaxy-central/tools/rgenetics/rgCaCo_code.py (追加) * galaxy-central/tools/rgenetics/rgClean.py (追加) * galaxy-central/tools/rgenetics/rgClean.xml (追加) * galaxy-central/tools/rgenetics/rgClean_code.py (追加) * galaxy-central/tools/rgenetics/rgEigPCA.py (追加) * galaxy-central/tools/rgenetics/rgEigPCA.xml (追加) * galaxy-central/tools/rgenetics/rgEigPCA_code.py (追加) * galaxy-central/tools/rgenetics/rgGLM.py (追加) * galaxy-central/tools/rgenetics/rgGLM.xml (追加) * galaxy-central/tools/rgenetics/rgGLM_code.py (追加) * galaxy-central/tools/rgenetics/rgGRR.py (追加) * galaxy-central/tools/rgenetics/rgGRR.xml (追加) * galaxy-central/tools/rgenetics/rgGRR_code.py (追加) * galaxy-central/tools/rgenetics/rgGTOOL.py (追加) * galaxy-central/tools/rgenetics/rgGTOOL.xml (追加) * galaxy-central/tools/rgenetics/rgGTOOL_code.py (追加) * galaxy-central/tools/rgenetics/rgHaploView.py (追加) * galaxy-central/tools/rgenetics/rgHaploView.xml (追加) * galaxy-central/tools/rgenetics/rgHaploView_code.py (追加) * galaxy-central/tools/rgenetics/rgLDIndep.py (追加) * galaxy-central/tools/rgenetics/rgLDIndep.xml (追加) * galaxy-central/tools/rgenetics/rgLDIndep_code.py (追加) * galaxy-central/tools/rgenetics/rgManQQ.py (追加) * galaxy-central/tools/rgenetics/rgManQQ.xml (追加) * galaxy-central/tools/rgenetics/rgManQQ_code.py (追加) * galaxy-central/tools/rgenetics/rgPedSub.py (追加) * galaxy-central/tools/rgenetics/rgPedSub.xml (追加) * galaxy-central/tools/rgenetics/rgPedSub_code.py (追加) * galaxy-central/tools/rgenetics/rgQC.py (追加) * galaxy-central/tools/rgenetics/rgQC.xml (追加) * galaxy-central/tools/rgenetics/rgQC_code.py (追加) * galaxy-central/tools/rgenetics/rgQQ.py (追加) * galaxy-central/tools/rgenetics/rgQQ.xml (追加) * galaxy-central/tools/rgenetics/rgQQ_code.py (追加) * galaxy-central/tools/rgenetics/rgRegion.py (追加) * galaxy-central/tools/rgenetics/rgRegion.xml (追加) * galaxy-central/tools/rgenetics/rgRegion_code.py (追加) * galaxy-central/tools/rgenetics/rgTDT.py (追加) * galaxy-central/tools/rgenetics/rgTDT.xml (追加) * galaxy-central/tools/rgenetics/rgTDT_code.py (追加) * galaxy-central/tools/rgenetics/rgfakePed.py (追加) * galaxy-central/tools/rgenetics/rgfakePed.xml (追加) * galaxy-central/tools/rgenetics/rgfakePed_code.py (追加) * galaxy-central/tools/rgenetics/rgfakePhe.py (追加) * galaxy-central/tools/rgenetics/rgfakePhe.xml (追加) * galaxy-central/tools/rgenetics/rgfakePhe_code.py (追加) * galaxy-central/tools/rgenetics/rgtest.sh (追加) * galaxy-central/tools/rgenetics/rgtest_one_tool.sh (追加) * galaxy-central/tools/rgenetics/rgutils.py (追加) * galaxy-central/tools/samtools (追加) * galaxy-central/tools/samtools/bam_to_sam.py (追加) * galaxy-central/tools/samtools/bam_to_sam.xml (追加) * galaxy-central/tools/samtools/pileup_interval.py (追加) * galaxy-central/tools/samtools/pileup_interval.xml (追加) * galaxy-central/tools/samtools/pileup_parser.pl (追加) * galaxy-central/tools/samtools/pileup_parser.xml (追加) * galaxy-central/tools/samtools/sam2interval.py (追加) * galaxy-central/tools/samtools/sam2interval.xml (追加) * galaxy-central/tools/samtools/sam_bitwise_flag_filter.py (追加) * galaxy-central/tools/samtools/sam_bitwise_flag_filter.xml (追加) * galaxy-central/tools/samtools/sam_merge.py (追加) * galaxy-central/tools/samtools/sam_merge.xml (追加) * galaxy-central/tools/samtools/sam_merge_code.py (追加) * galaxy-central/tools/samtools/sam_pileup.py (追加) * galaxy-central/tools/samtools/sam_pileup.xml (追加) * galaxy-central/tools/samtools/sam_to_bam.py (追加) * galaxy-central/tools/samtools/sam_to_bam.xml (追加) * galaxy-central/tools/solid_tools (追加) * galaxy-central/tools/solid_tools/maq_cs_wrapper.py (追加) * galaxy-central/tools/solid_tools/maq_cs_wrapper.xml (追加) * galaxy-central/tools/solid_tools/maq_cs_wrapper_code.py (追加) * galaxy-central/tools/solid_tools/qualsolid_boxplot_graph.sh (追加) * galaxy-central/tools/solid_tools/solid_qual_boxplot.xml (追加) * galaxy-central/tools/solid_tools/solid_qual_stats.py (追加) * galaxy-central/tools/solid_tools/solid_qual_stats.xml (追加) * galaxy-central/tools/sr_assembly (追加) * galaxy-central/tools/sr_assembly/velvetg.xml (追加) * galaxy-central/tools/sr_assembly/velvetg_wrapper.py (追加) * galaxy-central/tools/sr_assembly/velveth.xml (追加) * galaxy-central/tools/sr_assembly/velveth_wrapper.py (追加) * galaxy-central/tools/sr_mapping (追加) * galaxy-central/tools/sr_mapping/PerM.xml (追加) * galaxy-central/tools/sr_mapping/bfast_wrapper.py (追加) * galaxy-central/tools/sr_mapping/bfast_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/bowtie_color_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/bowtie_wrapper.py (追加) * galaxy-central/tools/sr_mapping/bowtie_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/bwa_wrapper.py (追加) * galaxy-central/tools/sr_mapping/bwa_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/fastq_statistics.xml (追加) * galaxy-central/tools/sr_mapping/lastz_paired_reads_wrapper.py (追加) * galaxy-central/tools/sr_mapping/lastz_paired_reads_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/lastz_wrapper.py (追加) * galaxy-central/tools/sr_mapping/lastz_wrapper.xml (追加) * galaxy-central/tools/sr_mapping/srma_wrapper.py (追加) * galaxy-central/tools/sr_mapping/srma_wrapper.xml (追加) * galaxy-central/tools/stats (追加) * galaxy-central/tools/stats/aggregate_binned_scores_in_intervals.xml (追加) * galaxy-central/tools/stats/aggregate_scores_in_intervals.py (追加) * galaxy-central/tools/stats/column_maker.py (追加) * galaxy-central/tools/stats/column_maker.xml (追加) * galaxy-central/tools/stats/cor.py (追加) * galaxy-central/tools/stats/cor.xml (追加) * galaxy-central/tools/stats/correlation.pl (追加) * galaxy-central/tools/stats/correlation.xml (追加) * galaxy-central/tools/stats/dna_filtering.py (追加) * galaxy-central/tools/stats/dna_filtering.xml (追加) * galaxy-central/tools/stats/filtering.py (追加) * galaxy-central/tools/stats/filtering.xml (追加) * galaxy-central/tools/stats/generate_matrix_for_pca_lda.pl (追加) * galaxy-central/tools/stats/generate_matrix_for_pca_lda.xml (追加) * galaxy-central/tools/stats/grouping.py (追加) * galaxy-central/tools/stats/grouping.xml (追加) * galaxy-central/tools/stats/gsummary.py (追加) * galaxy-central/tools/stats/gsummary.xml (追加) * galaxy-central/tools/stats/gsummary.xml.groups (追加) * galaxy-central/tools/stats/lda_analy.xml (追加) * galaxy-central/tools/stats/plot_from_lda.xml (追加) * galaxy-central/tools/stats/r_wrapper.sh (追加) * galaxy-central/tools/stats/wiggle_to_simple.py (追加) * galaxy-central/tools/stats/wiggle_to_simple.xml (追加) * galaxy-central/tools/taxonomy (追加) * galaxy-central/tools/taxonomy/find_diag_hits.py (追加) * galaxy-central/tools/taxonomy/find_diag_hits.xml (追加) * galaxy-central/tools/taxonomy/gi2taxonomy.py (追加) * galaxy-central/tools/taxonomy/gi2taxonomy.xml (追加) * galaxy-central/tools/taxonomy/lca.py (追加) * galaxy-central/tools/taxonomy/lca.xml (追加) * galaxy-central/tools/taxonomy/poisson2test.py (追加) * galaxy-central/tools/taxonomy/poisson2test.xml (追加) * galaxy-central/tools/taxonomy/t2ps_wrapper.py (追加) * galaxy-central/tools/taxonomy/t2ps_wrapper.xml (追加) * galaxy-central/tools/taxonomy/t2t_report.xml (追加) * galaxy-central/tools/validation (追加) * galaxy-central/tools/validation/fix_errors.py (追加) * galaxy-central/tools/validation/fix_errors.xml (追加) * galaxy-central/tools/validation/fix_errors_code.py (追加) * galaxy-central/tools/validation/validate.py (追加) * galaxy-central/tools/visualization (追加) * galaxy-central/tools/visualization/GMAJ.py (追加) * galaxy-central/tools/visualization/GMAJ.xml (追加) * galaxy-central/tools/visualization/LAJ.py (追加) * galaxy-central/tools/visualization/LAJ.xml (追加) * galaxy-central/tools/visualization/LAJ_code.py (追加) * galaxy-central/tools/visualization/build_ucsc_custom_track.py (追加) * galaxy-central/tools/visualization/build_ucsc_custom_track.xml (追加) * galaxy-central/tools/visualization/build_ucsc_custom_track_code.py (追加) * galaxy-central/transfer_datasets.ini.sample (追加) * galaxy-central/universe_wsgi.ini.sample (追加) import galaxy-central