チケット #47 (closed 仕様: fixed)
検索 WebAPI 機能の仕様
| 報告者: | h-morita | 担当者: | yy |
|---|---|---|---|
| 優先度: | 各マイルストーンで解決する | マイルストーン: | Iterate5(1/10) |
| コンポーネント: | OReFiL | バージョン: | |
| キーワード: | 関係者: | ||
| GanttChart表示: | OFF | 依存TaskNo: | |
| 開始予定日: | YYYY/MM/DD | 終了予定日: | YYYY/MM/DD |
説明 (最終更新者: h-morita) (diff)
検索 WebAPI 機能の仕様
インタフェース
SOAP
- WSDL
- /search/service.wsdl
- エントリポイント
- /search/api
- SOAPAction
- /search/api/GetResourceInfoByQueryTerm
- パラメータ仕様
| パラメータ名 | パラメータ内容 | 必須/オプション | デフォルト値 | 設定可能な値 |
| expression | 検索文字列 | 必須 | ー | IndriRunQuery が対応可能な式 |
| max_results | 最大検索件数 | 必須 | ー | 1 〜 1000 |
| order | ソート方法 | 必須 | ー | relevance もしくは date |
| enable_hide_unfetched | 404ページの表示/非表示 | 必須 | ー | true もしくは false |
| enable_relevance_feedback | 疑似関連フィードバック | 必須 | ー | true もしくは false |
- エラー仕様
- できうる限り SOAP エラー仕様に従ってエラーを返す
- パラメータが不足している場合内部サーバエラーで処理される場合がある
REST
- URI
- /search.xml
- パラメータ仕様
- GET パラメータもしくは POST パラメータとして付与
| パラメータ名 | パラメータ内容 | 必須/オプション | デフォルト値 | 設定可能な値 |
| query | 検索文字列 | 必須 | ー | IndriRunQuery が対応可能な式 |
| count | 最大検索件数 | オプション | 100 | 1 〜 1000 |
| sort_by | ソート方法 | オプション | relevance | relevance もしくは date |
| hide_unfetched | 404ページの表示/非表示 | オプション | on | on もしくは off |
| feedback | 疑似関連フィードバック | オプション | off | on もしくは off |
- エラー仕様
- 基本的には HTTP ステータスをもとにエラーハンドリングを行うこと
- ユーザパラメータにエラーがある場合は出来うる限りそのエラー内容を XML で返す
- エラー内容の仕様
- errors: エラーリスト
- error: エラー
- http_status_code: HTTP ステータスコード
- code: アプリケーションエラーコード
- name: エラー名
- message: エラーメッセージ
- error: エラー
- errors: エラーリスト
- エラーサンプル
<?xml version="1.0" encoding="UTF-8"?> <errors> <error> <http_status_code>400</http_status_code> <code>40003</code> <name>Orefil::InvalidCountError</name> <message>Set integer of 1 or more to `Max Results` value.</message> </error> </errors>
- エラー内容の仕様
レスポンス仕様
- Result_Set: 結果セット ( REST の場合は result_set )
- query: デフォルト値反映後の問い合わせ内容
- expression: 検索文字列パラメータ
- option: オプション系パラメータ
- max_results: 出力最大件数
- order: ソート方法
- enable_hide_unfetched: 404なオンラインリソース結果を表示するかどうか ( true / false )
- enable_relevance_feedback: 疑似フィードバックの有無 ( true / false )
- last_index_date: インデックスの更新日時
- status: 実行結果ステータス ( SOAP のみに存在 )
- code: ステータスコード
- name: ステータス名
- message: ステータスメッセージ
- results: 検索結果リスト
- item: 検索結果単体 ( REST の場合は result )
- id: オンラインリソース ID
- rank: 検索一致ランク
- title: オンラインリソースタイトル
- updated_at: データ更新日 ( XML Schema 形式の日付で記載 )
- average_stars: レーティング平均値
- snippet: スニペット
- mesh_term_list: MeSH リスト
- item: MeSH 単体 ( REST の場合は mesh_term )
- url: オンラインリソース URL
- pages: 参照リンク検索 URL リスト
- item: 参照リンク検索 ( REST の場合は page )
- name: 検索エンジン名
- url: 参照リンク検索 URL
- item: 参照リンク検索 ( REST の場合は page )
- papers: 参照文献検索 URI リスト
- item: 参照文献検索 ( REST の場合は paper )
- name: 検索エンジン名
- url: 参照文献検索 URL
- item: 参照文献検索 ( REST の場合は paper )
- pmid_list: 参照 PubMed の PMID リスト
- item: 参照 PubMed の pmid ( REST の場合は pmid )
- item: 検索結果単体 ( REST の場合は result )
- query: デフォルト値反映後の問い合わせ内容
リクエスト/レスポンスサンプル
以下のクエリで Web API を呼び出すリクエストとその結果のレスポンスを SOAP / REST の二つでサンプルとして示す。
- リクエスト内容
- 検索文字列 : #filreq(DNA.majr #combine(genome))
- クエリオプション
- 最大結果件数 : 3 件
- ソート方法 : 関連度順
- 404ページの表示/ 非表示 : 表示
- 疑似関連フィードバック : 無効
SOAP
- リクエスト
<?xml version="1.0" encoding="UTF-8"?> <SOAP-ENV:Envelope xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/" SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/" xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"> <SOAP-ENV:Body> <m:GetResourceInfoByQueryTerm xmlns:m="urn:ActionWebService"> <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> <max_results xsi:type="xsd:int">3</max_results> <order xsi:type="xsd:string">relevance</order> <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> </m:GetResourceInfoByQueryTerm> </SOAP-ENV:Body> </SOAP-ENV:Envelope> - レスポンス
<?xml version="1.0" encoding="UTF-8" ?> <env:Envelope xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:env="http://schemas.xmlsoap.org/soap/envelope/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <env:Body> <n1:GetResourceInfoByQueryTermResponse xmlns:n1="urn:ActionWebService" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"> <return xsi:type="n1:Retrieve..ResultSet"> <results n2:arrayType="n1:Retrieve..Result[3]" xmlns:n2="http://schemas.xmlsoap.org/soap/encoding/" xsi:type="n2:Array"> <item> <id xsi:type="xsd:int">4980</id> <mesh_term_list n2:arrayType="xsd:string[28]" xsi:type="n2:Array"> <item>Abnormalities, Multiple</item> <item>Carbamoyl-Phosphate Synthase I Deficiency Disease</item> <item>Chickens</item> <item>Chromosome Deletion</item> <item>Chromosome Mapping</item> <item>Chromosomes, Human, Pair 2</item> <item>Computational Biology</item> <item>DNA Primers</item> <item>Database Management Systems</item> <item>Databases, Genetic</item> <item>Databases, Nucleic Acid</item> <item>Databases, Protein</item> <item>Exons</item> <item>Genome</item> <item>Genome, Human</item> <item>Genomics</item> <item>Information Storage and Retrieval</item> <item>Internet</item> <item>Linkage (Genetics)</item> <item>Microsatellite Repeats</item> <item>Polymorphism, Single Nucleotide</item> <item>Proteins</item> <item>Proteome</item> <item>Proteomics</item> <item>RNA, Messenger</item> <item>Sequence Alignment</item> <item>Software</item> <item>Zebrafish</item> </mesh_term_list> <title xsi:type="xsd:string">UCSC Genome Browser Home</title> <pmid_list n2:arrayType="xsd:string[15]" xsi:type="n2:Array"> <item>16888352</item> <item>16381938</item> <item>12045153</item> <item>15216554</item> <item>17151077</item> <item>16888348</item> <item>16372332</item> <item>11932250</item> <item>16722777</item> <item>12519945</item> <item>16500937</item> <item>17142222</item> <item>15554057</item> <item>15608236</item> <item>16888346</item> </pmid_list> <snippet xsi:type="xsd:string">Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> <rank xsi:type="xsd:int">1</rank> <papers n2:arrayType="n1:Retrieve..Paper[4]" xsi:type="n2:Array"> <item> <name href="#id18291200"></name> <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> </item> <item> <name href="#id18285850"></name> <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.ucsc.edu%2F&ds=jnl&g=s&t=all</url> </item> <item> <name href="#id18277510"></name> <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.ucsc.edu%2F</url> </item> <item> <name href="#id18264560"></name> <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Search</url> </item> </papers> <average_stars xsi:type="xsd:double">+3.666666666666667</average_stars> <url xsi:type="xsd:string">http://genome.ucsc.edu/</url> <pages n2:arrayType="n1:Retrieve..Page[2]" xsi:type="n2:Array"> <item> <name href="#id18255240"></name> <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Google+Search</url> </item> <item> <name href="#id18253260"></name> <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&kgs=0&kls=1</url> </item> </pages> <updated_at xsi:type="xsd:dateTime">2008-02-20T00:00:00+09:00</updated_at> </item> <item> <id xsi:type="xsd:int">7142</id> <mesh_term_list n2:arrayType="xsd:string[9]" xsi:type="n2:Array"> <item>Chromosome Mapping</item> <item>Databases, Genetic</item> <item>Gene Expression Profiling</item> <item>Genome</item> <item>Oligonucleotide Array Sequence Analysis</item> <item>Sequence Alignment</item> <item>Sequence Analysis, DNA</item> <item>Software</item> <item>User-Computer Interface</item> </mesh_term_list> <title xsi:type="xsd:string">UCSC Genome Browser Home</title> <pmid_list n2:arrayType="xsd:string[2]" xsi:type="n2:Array"> <item>14681485</item> <item>16108715</item> </pmid_list> <snippet xsi:type="xsd:string">Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> <rank xsi:type="xsd:int">2</rank> <papers n2:arrayType="n1:Retrieve..Paper[4]" xsi:type="n2:Array"> <item> <name href="#id18291200"></name> <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> </item> <item> <name href="#id18285850"></name> <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&ds=jnl&g=s&t=all</url> </item> <item> <name href="#id18277510"></name> <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.ucsc.edu%2F</url> </item> <item> <name href="#id18264560"></name> <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Search</url> </item> </papers> <average_stars xsi:type="xsd:double">+3</average_stars> <url xsi:type="xsd:string">http://www.genome.ucsc.edu/</url> <pages n2:arrayType="n1:Retrieve..Page[2]" xsi:type="n2:Array"> <item> <name href="#id18255240"></name> <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Google+Search</url> </item> <item> <name href="#id18253260"></name> <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&kgs=0&kls=1</url> </item> </pages> <updated_at xsi:type="xsd:dateTime">2008-02-18T00:00:00+09:00</updated_at> </item> <item> <id xsi:type="xsd:int">7515</id> <mesh_term_list n2:arrayType="xsd:string[4]" xsi:type="n2:Array"> <item>Computational Biology</item> <item>Genomics</item> <item>Isochores</item> <item>Software</item> </mesh_term_list> <title xsi:type="xsd:string">UCSC Genome Browser Home</title> <pmid_list n2:arrayType="xsd:string[1]" xsi:type="n2:Array"> <item>15215396</item> </pmid_list> <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> <rank xsi:type="xsd:int">3</rank> <papers n2:arrayType="n1:Retrieve..Paper[4]" xsi:type="n2:Array"> <item> <name href="#id18291200"></name> <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> </item> <item> <name href="#id18285850"></name> <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&ds=jnl&g=s&t=all</url> </item> <item> <name href="#id18277510"></name> <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.cse.ucsc.edu%2F</url> </item> <item> <name href="#id18264560"></name> <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Search</url> </item> </papers> <average_stars xsi:type="xsd:double">+3</average_stars> <url xsi:type="xsd:string">http://genome.cse.ucsc.edu/</url> <pages n2:arrayType="n1:Retrieve..Page[2]" xsi:type="n2:Array"> <item> <name href="#id18255240"></name> <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Google+Search</url> </item> <item> <name href="#id18253260"></name> <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&kgs=0&kls=1</url> </item> </pages> <updated_at xsi:type="xsd:dateTime">2008-02-17T00:00:00+09:00</updated_at> </item> </results> <query xsi:type="n1:Retrieve..Query"> <option xsi:type="n1:Retrieve..Option"> <max_results xsi:type="xsd:int">3</max_results> <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> <order xsi:type="xsd:string">relevance</order> </option> <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> <last_index_date xsi:type="xsd:dateTime">2008-03-17T15:34:23+09:00</last_index_date> </query> <status xsi:type="n1:Retrieve..Status"> <name xsi:type="xsd:string">Orefil::Success</name> <code xsi:type="xsd:string">20000</code> <message xsi:type="xsd:string">success.</message> </status> </return> </n1:GetResourceInfoByQueryTermResponse> <name id="id18291200" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">BioMed Central</name> <name id="id18285850" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">Scirus</name> <name id="id18277510" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">HighWire Press</name> <name id="id18264560" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">Google Scholar</name> <name id="id18255240" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">Google</name> <name id="id18253260" xsi:type="xsd:string" env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">AltaVista</name> </env:Body> </env:Envelope>
REST
- リクエスト
/search.xml?query=%23filreq%28DNA.majr+%23combine%28genome%29%29&count=3&sort_by=relevance&hide_unfetched=on
- レスポンス
<?xml version="1.0" encoding="UTF-8"?> <result_set> <query> <expression>#filreq(DNA.majr #combine(genome))</expression> <option> <max_results>3</max_results> <order>relevance</order> <enable_hide_unfetched>true</enable_hide_unfetched> <enable_relevance_feedback>false</enable_relevance_feedback> </option> <last_index_date>2008-03-04T17:05:26+09:00</last_index_date> </query> <results> <result> <id>4980</id> <rank>1</rank> <title>UCSC Genome Browser Home</title> <updated_at>2008-02-20T00:00:00+09:00</updated_at> <average_stars>3.4</average_stars> <snippet> Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many... </snippet> <mesh_term_list> <mesh_term>Abnormalities, Multiple</mesh_term> <mesh_term>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh_term> <mesh_term>Chickens</mesh_term> <mesh_term>Chromosome Deletion</mesh_term> <mesh_term>Chromosome Mapping</mesh_term> <mesh_term>Chromosomes, Human, Pair 2</mesh_term> <mesh_term>Computational Biology</mesh_term> <mesh_term>DNA Primers</mesh_term> <mesh_term>Database Management Systems</mesh_term> <mesh_term>Databases, Genetic</mesh_term> <mesh_term>Databases, Nucleic Acid</mesh_term> <mesh_term>Databases, Protein</mesh_term> <mesh_term>Exons</mesh_term> <mesh_term>Genome</mesh_term> <mesh_term>Genome, Human</mesh_term> <mesh_term>Genomics</mesh_term> <mesh_term>Information Storage and Retrieval</mesh_term> <mesh_term>Internet</mesh_term> <mesh_term>Linkage (Genetics)</mesh_term> <mesh_term>Microsatellite Repeats</mesh_term> <mesh_term>Polymorphism, Single Nucleotide</mesh_term> <mesh_term>Proteins</mesh_term> <mesh_term>Proteome</mesh_term> <mesh_term>Proteomics</mesh_term> <mesh_term>RNA, Messenger</mesh_term> <mesh_term>Sequence Alignment</mesh_term> <mesh_term>Software</mesh_term> <mesh_term>Zebrafish</mesh_term> </mesh_term_list> <url>http://genome.ucsc.edu/</url> <pages> <page> <name>Google</name> <url> http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Google+Search </url> </page> <page> <name>AltaVista</name> <url> http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&kgs=0&kls=1 </url> </page> </pages> <papers> <paper> <name>BioMed Central</name> <url> http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search </url> </paper> <paper> <name>Scirus</name> <url> http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.ucsc.edu%2F&ds=jnl&g=s&t=all </url> </paper> <paper> <name>HighWire Press</name> <url> http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007 </url> </paper> <paper> <name>Google Scholar</name> <url> http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Search </url> </paper> </papers> <pmid_list> <pmid>16888352</pmid> <pmid>16381938</pmid> <pmid>12045153</pmid> <pmid>15216554</pmid> <pmid>17151077</pmid> <pmid>16888348</pmid> <pmid>16372332</pmid> <pmid>11932250</pmid> <pmid>16722777</pmid> <pmid>12519945</pmid> <pmid>16500937</pmid> <pmid>17142222</pmid> <pmid>15554057</pmid> <pmid>15608236</pmid> <pmid>16888346</pmid> </pmid_list> </result> <result> <id>7142</id> <rank>2</rank> <title>UCSC Genome Browser Home</title> <updated_at>2008-02-18T00:00:00+09:00</updated_at> <average_stars>3.0</average_stars> <snippet> Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical... </snippet> <mesh_term_list> <mesh_term>Chromosome Mapping</mesh_term> <mesh_term>Databases, Genetic</mesh_term> <mesh_term>Gene Expression Profiling</mesh_term> <mesh_term>Genome</mesh_term> <mesh_term>Oligonucleotide Array Sequence Analysis</mesh_term> <mesh_term>Sequence Alignment</mesh_term> <mesh_term>Sequence Analysis, DNA</mesh_term> <mesh_term>Software</mesh_term> <mesh_term>User-Computer Interface</mesh_term> </mesh_term_list> <url>http://www.genome.ucsc.edu/</url> <pages> <page> <name>Google</name> <url> http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Google+Search </url> </page> <page> <name>AltaVista</name> <url> http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&kgs=0&kls=1 </url> </page> </pages> <papers> <paper> <name>BioMed Central</name> <url> http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search </url> </paper> <paper> <name>Scirus</name> <url> http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&ds=jnl&g=s&t=all </url> </paper> <paper> <name>HighWire Press</name> <url> http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007 </url> </paper> <paper> <name>Google Scholar</name> <url> http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Search </url> </paper> </papers> <pmid_list> <pmid>14681485</pmid> <pmid>16108715</pmid> </pmid_list> </result> <result> <id>7515</id> <rank>3</rank> <title>UCSC Genome Browser Home</title> <updated_at>2008-02-17T00:00:00+09:00</updated_at> <average_stars>3.0</average_stars> <snippet> IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G... </snippet> <mesh_term_list> <mesh_term>Computational Biology</mesh_term> <mesh_term>Genomics</mesh_term> <mesh_term>Isochores</mesh_term> <mesh_term>Software</mesh_term> </mesh_term_list> <url>http://genome.cse.ucsc.edu/</url> <pages> <page> <name>Google</name> <url> http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Google+Search </url> </page> <page> <name>AltaVista</name> <url> http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&kgs=0&kls=1 </url> </page> </pages> <papers> <paper> <name>BioMed Central</name> <url> http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search </url> </paper> <paper> <name>Scirus</name> <url> http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&ds=jnl&g=s&t=all </url> </paper> <paper> <name>HighWire Press</name> <url> http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007 </url> </paper> <paper> <name>Google Scholar</name> <url> http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Search </url> </paper> </papers> <pmid_list> <pmid>15215396</pmid> </pmid_list> </result> </results> </result_set>
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