| | 2 | == Web API 結果サンプル == |
| | 3 | * 以下のクエリで Web API を呼び出した結果のサンプル |
| | 4 | * クエリ式 : #filreq(DNA.majr #combine(genome)) |
| | 5 | * クエリ条件 |
| | 6 | * 最大結果件数 : 5 件 |
| | 7 | * ソート順序 : 関連度順 |
| | 8 | * Page not Found なページを隠す : ○ |
| | 9 | * 疑似関連フィードバックを有効 : ×[[br]] |
| | 10 | {{{ |
| | 11 | <?xml version="1.0" encoding="UTF-8"?> |
| | 12 | <result_set> |
| | 13 | <query> |
| | 14 | <expression>#filreq(DNA.majr #combine(genome))</expression> |
| | 15 | <option> |
| | 16 | <max_results>5</max_results> |
| | 17 | <order>relevance</order> |
| | 18 | <enable_hide_unfetched>true</enable_hide_unfetched> |
| | 19 | <enable_relevance_feedback>false</enable_relevance_feedback> |
| | 20 | </option> |
| | 21 | </query> |
| | 22 | <results> |
| | 23 | <result> |
| | 24 | <rank>1</rank> |
| | 25 | <title>UCSC Genome Browser Home</title> |
| | 26 | <snippet>Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> |
| | 27 | <meshes> |
| | 28 | <mesh>Abnormalities, Multiple</mesh> |
| | 29 | <mesh>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh> |
| | 30 | <mesh>Chickens</mesh> |
| | 31 | <mesh>Chromosome Deletion</mesh> |
| | 32 | <mesh>Chromosome Mapping</mesh> |
| | 33 | <mesh>Chromosomes, Human, Pair 2</mesh> |
| | 34 | <mesh>Computational Biology</mesh> |
| | 35 | <mesh>DNA Primers</mesh> |
| | 36 | <mesh>Database Management Systems</mesh> |
| | 37 | <mesh>Databases, Genetic</mesh> |
| | 38 | <mesh>Databases, Nucleic Acid</mesh> |
| | 39 | <mesh>Databases, Protein</mesh> |
| | 40 | <mesh>Exons</mesh> |
| | 41 | <mesh>Genome</mesh> |
| | 42 | <mesh>Genome, Human</mesh> |
| | 43 | <mesh>Genomics</mesh> |
| | 44 | <mesh>Information Storage and Retrieval</mesh> |
| | 45 | <mesh>Internet</mesh> |
| | 46 | <mesh>Linkage (Genetics)</mesh> |
| | 47 | <mesh>Microsatellite Repeats</mesh> |
| | 48 | <mesh>Polymorphism, Single Nucleotide</mesh> |
| | 49 | <mesh>Proteins</mesh> |
| | 50 | <mesh>Proteome</mesh> |
| | 51 | <mesh>Proteomics</mesh> |
| | 52 | <mesh>RNA, Messenger</mesh> |
| | 53 | <mesh>Sequence Alignment</mesh> |
| | 54 | <mesh>Software</mesh> |
| | 55 | <mesh>Zebrafish</mesh> |
| | 56 | </meshes> |
| | 57 | <url>http://genome.ucsc.edu/</url> |
| | 58 | <pages> |
| | 59 | <google>http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| | 60 | <altavista>http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| | 61 | </pages> |
| | 62 | <papers> |
| | 63 | <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| | 64 | <scirus>http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| | 65 | <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| | 66 | <google_scholar>http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| | 67 | </papers> |
| | 68 | <pubmeds> |
| | 69 | <pmid>16888352</pmid> |
| | 70 | <pmid>16381938</pmid> |
| | 71 | <pmid>12045153</pmid> |
| | 72 | <pmid>15216554</pmid> |
| | 73 | <pmid>17151077</pmid> |
| | 74 | <pmid>16888348</pmid> |
| | 75 | <pmid>16372332</pmid> |
| | 76 | <pmid>11932250</pmid> |
| | 77 | <pmid>16722777</pmid> |
| | 78 | <pmid>12519945</pmid> |
| | 79 | <pmid>16500937</pmid> |
| | 80 | <pmid>17142222</pmid> |
| | 81 | <pmid>15554057</pmid> |
| | 82 | <pmid>15608236</pmid> |
| | 83 | <pmid>16888346</pmid> |
| | 84 | </pubmeds> |
| | 85 | </result> |
| | 86 | <result> |
| | 87 | <rank>2</rank> |
| | 88 | <title>UCSC Genome Browser Home</title> |
| | 89 | <snippet>Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> |
| | 90 | <meshes> |
| | 91 | <mesh>Chromosome Mapping</mesh> |
| | 92 | <mesh>Databases, Genetic</mesh> |
| | 93 | <mesh>Gene Expression Profiling</mesh> |
| | 94 | <mesh>Genome</mesh> |
| | 95 | <mesh>Oligonucleotide Array Sequence Analysis</mesh> |
| | 96 | <mesh>Sequence Alignment</mesh> |
| | 97 | <mesh>Sequence Analysis, DNA</mesh> |
| | 98 | <mesh>Software</mesh> |
| | 99 | <mesh>User-Computer Interface</mesh> |
| | 100 | </meshes> |
| | 101 | <url>http://www.genome.ucsc.edu/</url> |
| | 102 | <pages> |
| | 103 | <google>http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| | 104 | <altavista>http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| | 105 | </pages> |
| | 106 | <papers> |
| | 107 | <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| | 108 | <scirus>http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| | 109 | <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| | 110 | <google_scholar>http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| | 111 | </papers> |
| | 112 | <pubmeds> |
| | 113 | <pmid>14681485</pmid> |
| | 114 | <pmid>16108715</pmid> |
| | 115 | </pubmeds> |
| | 116 | </result> |
| | 117 | <result> |
| | 118 | <rank>3</rank> |
| | 119 | <title>UCSC Genome Browser Home</title> |
| | 120 | <snippet>IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> |
| | 121 | <meshes> |
| | 122 | <mesh>Computational Biology</mesh> |
| | 123 | <mesh>Genomics</mesh> |
| | 124 | <mesh>Isochores</mesh> |
| | 125 | <mesh>Software</mesh> |
| | 126 | </meshes> |
| | 127 | <url>http://genome.cse.ucsc.edu/</url> |
| | 128 | <pages> |
| | 129 | <google>http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| | 130 | <altavista>http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| | 131 | </pages> |
| | 132 | <papers> |
| | 133 | <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| | 134 | <scirus>http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| | 135 | <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| | 136 | <google_scholar>http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.cse.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| | 137 | </papers> |
| | 138 | <pubmeds> |
| | 139 | <pmid>15215396</pmid> |
| | 140 | </pubmeds> |
| | 141 | </result> |
| | 142 | <result> |
| | 143 | <rank>4</rank> |
| | 144 | <title>Ensembl Genome Browser</title> |
| | 145 | <snippet>...http : //www . ensembl . org/ ) project provides a comprehensive and integrated source of annotation of chordate <strong>genome</strong> sequences . Over the past year the number of <strong>genomes</strong> available from Ensembl has increased from 15 to 33 , with the addition of sites for...Ensembl has increased from 15 to 33 , with the addition of sites for the mammalian <strong>genomes</strong> of elephant , rabbit , armadillo , tenrec , platypus , pig , cat , bush baby , common shrew , microbat and european...</snippet> |
| | 146 | <meshes> |
| | 147 | <mesh>ADP-Ribosylation Factors</mesh> |
| | 148 | <mesh>Abnormalities, Multiple</mesh> |
| | 149 | <mesh>Alternative Splicing</mesh> |
| | 150 | <mesh>Automation</mesh> |
| | 151 | <mesh>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh> |
| | 152 | <mesh>Cardiomyopathy, Dilated</mesh> |
| | 153 | <mesh>Chickens</mesh> |
| | 154 | <mesh>Chromosome Deletion</mesh> |
| | 155 | <mesh>Chromosome Mapping</mesh> |
| | 156 | <mesh>Chromosomes, Human, Pair 2</mesh> |
| | 157 | <mesh>Computational Biology</mesh> |
| | 158 | <mesh>DNA Primers</mesh> |
| | 159 | <mesh>Database Management Systems</mesh> |
| | 160 | <mesh>Databases, Factual</mesh> |
| | 161 | <mesh>Databases, Genetic</mesh> |
| | 162 | <mesh>Databases, Nucleic Acid</mesh> |
| | 163 | <mesh>Dog Diseases</mesh> |
| | 164 | <mesh>Exons</mesh> |
| | 165 | <mesh>Expressed Sequence Tags</mesh> |
| | 166 | <mesh>GTP Phosphohydrolases</mesh> |
| | 167 | <mesh>Genes</mesh> |
| | 168 | <mesh>Genetic Techniques</mesh> |
| | 169 | <mesh>Genome</mesh> |
| | 170 | <mesh>Genome, Human</mesh> |
| | 171 | <mesh>Genomics</mesh> |
| | 172 | <mesh>Glycosyltransferases</mesh> |
| | 173 | <mesh>Information Dissemination</mesh> |
| | 174 | <mesh>Information Storage and Retrieval</mesh> |
| | 175 | <mesh>Internet</mesh> |
| | 176 | <mesh>Membrane Proteins</mesh> |
| | 177 | <mesh>Microsatellite Repeats</mesh> |
| | 178 | <mesh>Models, Biological</mesh> |
| | 179 | <mesh>Nucleic Acid Hybridization</mesh> |
| | 180 | <mesh>Oligonucleotide Array Sequence Analysis</mesh> |
| | 181 | <mesh>Polymorphism, Single Nucleotide</mesh> |
| | 182 | <mesh>Promoter Regions (Genetics)</mesh> |
| | 183 | <mesh>Quantitative Trait Loci</mesh> |
| | 184 | <mesh>Regulatory Sequences, Nucleic Acid</mesh> |
| | 185 | <mesh>Sarcoglycans</mesh> |
| | 186 | <mesh>Software</mesh> |
| | 187 | <mesh>Systems Biology</mesh> |
| | 188 | <mesh>Zebrafish</mesh> |
| | 189 | <mesh>Zebrafish Proteins</mesh> |
| | 190 | </meshes> |
| | 191 | <url>http://www.ensembl.org/index.html</url> |
| | 192 | <pages> |
| | 193 | <google>http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;btnG=Google+Search</google> |
| | 194 | <altavista>http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;kgs=0&amp;kls=1</altavista> |
| | 195 | </pages> |
| | 196 | <papers> |
| | 197 | <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=www.ensembl.org%2Findex.html&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| | 198 | <scirus>http://www.scirus.com/srsapp/search?q=www.ensembl.org%2Findex.html&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| | 199 | <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=www.ensembl.org%2Findex.html&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| | 200 | <google_scholar>http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.ensembl.org%2Findex.html&amp;btnG=Search</google_scholar> |
| | 201 | </papers> |
| | 202 | <pubmeds> |
| | 203 | <pmid>16381931</pmid> |
| | 204 | <pmid>15189572</pmid> |
| | 205 | <pmid>12385995</pmid> |
| | 206 | <pmid>11890680</pmid> |
| | 207 | <pmid>15216554</pmid> |
| | 208 | <pmid>16103655</pmid> |
| | 209 | <pmid>14681459</pmid> |
| | 210 | <pmid>15123595</pmid> |
| | 211 | <pmid>15608235</pmid> |
| | 212 | <pmid>12519943</pmid> |
| | 213 | <pmid>15078858</pmid> |
| | 214 | <pmid>15123591</pmid> |
| | 215 | <pmid>11752248</pmid> |
| | 216 | <pmid>17148474</pmid> |
| | 217 | <pmid>17537812</pmid> |
| | 218 | <pmid>16888346</pmid> |
| | 219 | <pmid>15123590</pmid> |
| | 220 | <pmid>16610137</pmid> |
| | 221 | <pmid>16729214</pmid> |
| | 222 | </pubmeds> |
| | 223 | </result> |
| | 224 | <result> |
| | 225 | <rank>5</rank> |
| | 226 | <title>BGI Rise Rice Genome Database</title> |
| | 227 | <snippet>A <strong>Genome</strong>-wide Microsatellite Polymorphism Database for the Indica and Japonica Rice . Microsatellite ( MS ) polymorphism is an...from IRGSP and genetic markers from RGP . Based on genetic marker positions on the rice <strong>genome</strong> ( http : //rise . <strong>genomics</strong> . org . cn/rice2/index . jsp ) , we determined the approximate genetic distances of these MS loci...</snippet> |
| | 228 | <meshes> |
| | 229 | <mesh>DNA, Plant</mesh> |
| | 230 | <mesh>Databases, Genetic</mesh> |
| | 231 | <mesh>Genome, Plant</mesh> |
| | 232 | <mesh>Genomics</mesh> |
| | 233 | <mesh>Microsatellite Repeats</mesh> |
| | 234 | <mesh>Oryza sativa</mesh> |
| | 235 | <mesh>Polymorphism, Genetic</mesh> |
| | 236 | </meshes> |
| | 237 | <url>http://rise.genomics.org.cn/rice/index2.jsp</url> |
| | 238 | <pages> |
| | 239 | <google>http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Frise.genomics.org.cn%2Frice%2Findex2.jsp&amp;btnG=Google+Search</google> |
| | 240 | <altavista>http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Frise.genomics.org.cn%2Frice%2Findex2.jsp&amp;kgs=0&amp;kls=1</altavista> |
| | 241 | </pages> |
| | 242 | <papers> |
| | 243 | <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| | 244 | <scirus>http://www.scirus.com/srsapp/search?q=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| | 245 | <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| | 246 | <google_scholar>http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;btnG=Search</google_scholar> |
| | 247 | </papers> |
| | 248 | <pubmeds> |
| | 249 | <pmid>14681438</pmid> |
| | 250 | <pmid>17452422</pmid> |
| | 251 | </pubmeds> |
| | 252 | </result> |
| | 253 | </results> |
| | 254 | </result_set> |
| | 255 | }}} |
