125 | | <query xsi:type="n1:Retrieve..Query"> |
126 | | <option xsi:type="n1:Retrieve..Option"> |
127 | | <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> |
128 | | <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> |
129 | | <order xsi:type="xsd:string">relevance</order> |
130 | | <max_results xsi:type="xsd:int">3</max_results> |
131 | | </option> |
132 | | <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> |
133 | | </query> |
134 | | <status xsi:type="n1:Retrieve..Status"> |
135 | | <name xsi:type="xsd:string">Orefil::Success</name> |
136 | | <message xsi:type="xsd:string">success.</message> |
137 | | <code xsi:type="xsd:string">20000</code> |
138 | | </status> |
143 | | <pubmed n2:arrayType="xsd:string[15]" |
144 | | xsi:type="n2:Array"> |
145 | | <item>16888352</item> |
146 | | <item>16381938</item> |
147 | | <item>12045153</item> |
148 | | <item>15216554</item> |
149 | | <item>17151077</item> |
150 | | <item>16888348</item> |
151 | | <item>16372332</item> |
152 | | <item>11932250</item> |
153 | | <item>16722777</item> |
154 | | <item>12519945</item> |
155 | | <item>16500937</item> |
156 | | <item>17142222</item> |
157 | | <item>15554057</item> |
158 | | <item>15608236</item> |
159 | | <item>16888346</item> |
160 | | </pubmed> |
161 | | <snippet xsi:type="xsd:string">Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> |
162 | | <papers xsi:type="n1:Retrieve..Papers"> |
163 | | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
164 | | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
165 | | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
166 | | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
167 | | </papers> |
168 | | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
169 | | <pages xsi:type="n1:Retrieve..Pages"> |
170 | | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
171 | | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
172 | | </pages> |
173 | | <uri xsi:type="xsd:string">http://genome.ucsc.edu/</uri> |
174 | | <rank xsi:type="xsd:int">1</rank> |
| 160 | <pubmed n2:arrayType="xsd:string[15]" |
| 161 | xsi:type="n2:Array"> |
| 162 | <item>16888352</item> |
| 163 | <item>16381938</item> |
| 164 | <item>12045153</item> |
| 165 | <item>15216554</item> |
| 166 | <item>17151077</item> |
| 167 | <item>16888348</item> |
| 168 | <item>16372332</item> |
| 169 | <item>11932250</item> |
| 170 | <item>16722777</item> |
| 171 | <item>12519945</item> |
| 172 | <item>16500937</item> |
| 173 | <item>17142222</item> |
| 174 | <item>15554057</item> |
| 175 | <item>15608236</item> |
| 176 | <item>16888346</item> |
| 177 | </pubmed> |
| 178 | <snippet xsi:type="xsd:string">Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> |
| 179 | <papers xsi:type="n1:Retrieve..Papers"> |
| 180 | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| 181 | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| 182 | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| 183 | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| 184 | </papers> |
| 185 | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
| 186 | <rank xsi:type="xsd:int">1</rank> |
| 187 | <url xsi:type="xsd:string">http://genome.ucsc.edu/</url> |
| 188 | <pages xsi:type="n1:Retrieve..Pages"> |
| 189 | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| 190 | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| 191 | </pages> |
208 | | <pubmed n2:arrayType="xsd:string[2]" |
209 | | xsi:type="n2:Array"> |
210 | | <item>14681485</item> |
211 | | <item>16108715</item> |
212 | | </pubmed> |
213 | | <snippet xsi:type="xsd:string">Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> |
214 | | <papers xsi:type="n1:Retrieve..Papers"> |
215 | | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
216 | | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
217 | | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
218 | | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
219 | | </papers> |
220 | | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
221 | | <pages xsi:type="n1:Retrieve..Pages"> |
222 | | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
223 | | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
224 | | </pages> |
225 | | <uri xsi:type="xsd:string">http://www.genome.ucsc.edu/</uri> |
226 | | <rank xsi:type="xsd:int">2</rank> |
| 206 | <pubmed n2:arrayType="xsd:string[2]" |
| 207 | xsi:type="n2:Array"> |
| 208 | <item>14681485</item> |
| 209 | <item>16108715</item> |
| 210 | </pubmed> |
| 211 | <snippet xsi:type="xsd:string">Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> |
| 212 | <papers xsi:type="n1:Retrieve..Papers"> |
| 213 | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| 214 | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| 215 | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| 216 | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| 217 | </papers> |
| 218 | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
| 219 | <rank xsi:type="xsd:int">2</rank> |
| 220 | <url xsi:type="xsd:string">http://www.genome.ucsc.edu/</url> |
| 221 | <pages xsi:type="n1:Retrieve..Pages"> |
| 222 | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| 223 | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| 224 | </pages> |
241 | | <pubmed n2:arrayType="xsd:string[1]" |
242 | | xsi:type="n2:Array"> |
243 | | <item>15215396</item> |
244 | | </pubmed> |
245 | | <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> |
246 | | <papers xsi:type="n1:Retrieve..Papers"> |
247 | | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
248 | | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
249 | | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.cse.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
250 | | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
251 | | </papers> |
252 | | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
253 | | <pages xsi:type="n1:Retrieve..Pages"> |
254 | | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;btnG=Google+Search</google> |
255 | | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
256 | | </pages> |
257 | | <uri xsi:type="xsd:string">http://genome.cse.ucsc.edu/</uri> |
258 | | <rank xsi:type="xsd:int">3</rank> |
| 234 | <pubmed n2:arrayType="xsd:string[1]" |
| 235 | xsi:type="n2:Array"> |
| 236 | <item>15215396</item> |
| 237 | </pubmed> |
| 238 | <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> |
| 239 | <papers xsi:type="n1:Retrieve..Papers"> |
| 240 | <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</high_wire_press> |
| 241 | <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> |
| 242 | <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</bio_med_central> |
| 243 | <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.cse.ucsc.edu%2F&amp;btnG=Search</google_scholar> |
| 244 | </papers> |
| 245 | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
| 246 | <rank xsi:type="xsd:int">3</rank> |
| 247 | <url xsi:type="xsd:string">http://genome.cse.ucsc.edu/</url> |
| 248 | <pages xsi:type="n1:Retrieve..Pages"> |
| 249 | <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> |
| 250 | <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;btnG=Google+Search</google> |
| 251 | </pages> |
| 254 | <query xsi:type="n1:Retrieve..Query"> |
| 255 | <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> |
| 256 | <option xsi:type="n1:Retrieve..Option"> |
| 257 | <max_results xsi:type="xsd:int">3</max_results> |
| 258 | <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> |
| 259 | <order xsi:type="xsd:string">relevance</order> |
| 260 | <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> |
| 261 | </option> |
| 262 | </query> |
| 263 | <status xsi:type="n1:Retrieve..Status"> |
| 264 | <name xsi:type="xsd:string">Orefil::Success</name> |
| 265 | <message xsi:type="xsd:string">success.</message> |
| 266 | <code xsi:type="xsd:string">20000</code> |
| 267 | </status> |