バージョン 11 から バージョン 12 における更新: チケット #47

差分発生行の前後
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更新日時:
2008/01/25 13:58:11 (18 年 前)
更新者:
h-morita
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  • チケット #47 – 説明

    v11 v12  
    5757   * expression: 検索文字列パラメータ 
    5858    * option: オプション系パラメータ 
    59      * max_result: 出力最大件数 
     59     * max_results: 出力最大件数 
    6060     * order: ソート方法 
    6161     * enable_hide_unfetched: 404なオンラインリソース結果を表示するかどうか 
    … …  
    7272    * mesh_list: MeSH リスト 
    7373     * item: MeSH 単体 ( REST の場合は mesh ) 
    74     * uri: オンラインリソース URI 
    75     * pages: 参照リンク検索 URI リスト 
    76      * google: google による参照リンク検索 URI 
    77      * altavista: altavista による参照リンク検索 URI 
     74    * url: オンラインリソース URL 
     75    * pages: 参照リンク検索 URL リスト 
     76     * google: google による参照リンク検索 URL 
     77     * altavista: altavista による参照リンク検索 URL 
    7878    * papers: 参照文献検索 URI リスト 
    79      * bio_med_central: BioMed Central による参照文献検索 URI 
    80      * scirus: scirus による参照文献検索 URI 
    81      * high_wire_press: high wire press による参照文献検索 URI 
    82      * google_scholar: google scholar による参照文献検索 URI 
     79     * bio_med_central: BioMed Central による参照文献検索 URL 
     80     * scirus: scirus による参照文献検索 URL 
     81     * high_wire_press: high wire press による参照文献検索 URL 
     82     * google_scholar: google scholar による参照文献検索 URL 
    8383    * pubmed: 参照 PubMed の PMID リスト 
    8484     * pmid: 参照 PubMed の pmid ( REST の場合は pmid ) 
    … …  
    123123        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"> 
    124124      <return xsi:type="n1:Retrieve..ResultSet"> 
    125         <query xsi:type="n1:Retrieve..Query"> 
    126           <option xsi:type="n1:Retrieve..Option"> 
    127             <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> 
    128             <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> 
    129             <order xsi:type="xsd:string">relevance</order> 
    130             <max_results xsi:type="xsd:int">3</max_results> 
    131           </option> 
    132           <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> 
    133         </query> 
    134         <status xsi:type="n1:Retrieve..Status"> 
    135           <name xsi:type="xsd:string">Orefil::Success</name> 
    136           <message xsi:type="xsd:string">success.</message> 
    137           <code xsi:type="xsd:string">20000</code> 
    138         </status> 
    139125        <results n2:arrayType="n1:Retrieve..Result[3]" 
    140126            xmlns:n2="http://schemas.xmlsoap.org/soap/encoding/" 
    141127            xsi:type="n2:Array"> 
    142128          <item> 
    143             <pubmed n2:arrayType="xsd:string[15]" 
    144                 xsi:type="n2:Array"> 
    145               <item>16888352</item> 
    146               <item>16381938</item> 
    147               <item>12045153</item> 
    148               <item>15216554</item> 
    149               <item>17151077</item> 
    150               <item>16888348</item> 
    151               <item>16372332</item> 
    152               <item>11932250</item> 
    153               <item>16722777</item> 
    154               <item>12519945</item> 
    155               <item>16500937</item> 
    156               <item>17142222</item> 
    157               <item>15554057</item> 
    158               <item>15608236</item> 
    159               <item>16888346</item> 
    160             </pubmed> 
    161             <snippet xsi:type="xsd:string">Comparative &lt;strong&gt;Genomic&lt;/strong&gt; Analysis Using the UCSC &lt;strong&gt;Genome&lt;/strong&gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &lt;strong&gt;genomes&lt;/strong&gt;. The University of California Santa Cruz (UCSC) &lt;strong&gt;Genome&lt;/strong&gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> 
    162             <papers xsi:type="n1:Retrieve..Papers"> 
    163               <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
    164               <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central> 
    165               <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
    166               <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
    167             </papers> 
    168             <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
    169             <pages xsi:type="n1:Retrieve..Pages"> 
    170               <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google> 
    171               <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista> 
    172             </pages> 
    173             <uri xsi:type="xsd:string">http://genome.ucsc.edu/</uri> 
    174             <rank xsi:type="xsd:int">1</rank> 
    175129            <mesh_list n2:arrayType="xsd:string[28]" 
    176130                xsi:type="n2:Array"> 
    … …  
    204158              <item>Zebrafish</item> 
    205159            </mesh_list> 
     160            <pubmed n2:arrayType="xsd:string[15]" 
     161                xsi:type="n2:Array"> 
     162              <item>16888352</item> 
     163              <item>16381938</item> 
     164              <item>12045153</item> 
     165              <item>15216554</item> 
     166              <item>17151077</item> 
     167              <item>16888348</item> 
     168              <item>16372332</item> 
     169              <item>11932250</item> 
     170              <item>16722777</item> 
     171              <item>12519945</item> 
     172              <item>16500937</item> 
     173              <item>17142222</item> 
     174              <item>15554057</item> 
     175              <item>15608236</item> 
     176              <item>16888346</item> 
     177            </pubmed> 
     178            <snippet xsi:type="xsd:string">Comparative &lt;strong&gt;Genomic&lt;/strong&gt; Analysis Using the UCSC &lt;strong&gt;Genome&lt;/strong&gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &lt;strong&gt;genomes&lt;/strong&gt;. The University of California Santa Cruz (UCSC) &lt;strong&gt;Genome&lt;/strong&gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> 
     179            <papers xsi:type="n1:Retrieve..Papers"> 
     180              <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
     181              <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
     182              <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central> 
     183              <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
     184            </papers> 
     185            <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
     186            <rank xsi:type="xsd:int">1</rank> 
     187            <url xsi:type="xsd:string">http://genome.ucsc.edu/</url> 
     188            <pages xsi:type="n1:Retrieve..Pages"> 
     189              <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista> 
     190              <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google> 
     191            </pages> 
    206192          </item> 
    207193          <item> 
    208             <pubmed n2:arrayType="xsd:string[2]" 
    209                 xsi:type="n2:Array"> 
    210               <item>14681485</item> 
    211               <item>16108715</item> 
    212             </pubmed> 
    213             <snippet xsi:type="xsd:string">Finding anchors for &lt;strong&gt;genomic&lt;/strong&gt; sequence comparison . Recent sequencing of the human and other mammalian &lt;strong&gt;genomes&lt;/strong&gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &lt;strong&gt;Genome&lt;/strong&gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &lt;strong&gt;Genome&lt;/strong&gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> 
    214             <papers xsi:type="n1:Retrieve..Papers"> 
    215               <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
    216               <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central> 
    217               <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=www.genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
    218               <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
    219             </papers> 
    220             <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
    221             <pages xsi:type="n1:Retrieve..Pages"> 
    222               <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google> 
    223               <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista> 
    224             </pages> 
    225             <uri xsi:type="xsd:string">http://www.genome.ucsc.edu/</uri> 
    226             <rank xsi:type="xsd:int">2</rank> 
    227194            <mesh_list n2:arrayType="xsd:string[9]" 
    228195                xsi:type="n2:Array"> 
    … …  
    237204              <item>User-Computer Interface</item> 
    238205            </mesh_list> 
     206            <pubmed n2:arrayType="xsd:string[2]" 
     207                xsi:type="n2:Array"> 
     208              <item>14681485</item> 
     209              <item>16108715</item> 
     210            </pubmed> 
     211            <snippet xsi:type="xsd:string">Finding anchors for &lt;strong&gt;genomic&lt;/strong&gt; sequence comparison . Recent sequencing of the human and other mammalian &lt;strong&gt;genomes&lt;/strong&gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &lt;strong&gt;Genome&lt;/strong&gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &lt;strong&gt;Genome&lt;/strong&gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> 
     212            <papers xsi:type="n1:Retrieve..Papers"> 
     213              <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
     214              <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
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     216              <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=www.genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
     217            </papers> 
     218            <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
     219            <rank xsi:type="xsd:int">2</rank> 
     220            <url xsi:type="xsd:string">http://www.genome.ucsc.edu/</url> 
     221            <pages xsi:type="n1:Retrieve..Pages"> 
     222              <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista> 
     223              <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google> 
     224            </pages> 
    239225          </item> 
    240226          <item> 
    241             <pubmed n2:arrayType="xsd:string[1]" 
    242                 xsi:type="n2:Array"> 
    243               <item>15215396</item> 
    244             </pubmed> 
    245             <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in &lt;strong&gt;genome&lt;/strong&gt; sequences . Isochores are long &lt;strong&gt;genome&lt;/strong&gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &lt;strong&gt;genome&lt;/strong&gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> 
    246             <papers xsi:type="n1:Retrieve..Papers"> 
    247               <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
    248               <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central> 
    249               <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.cse.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
    250               <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
    251             </papers> 
    252             <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
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    254               <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Google+Search</google> 
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     238            <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in &lt;strong&gt;genome&lt;/strong&gt; sequences . Isochores are long &lt;strong&gt;genome&lt;/strong&gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &lt;strong&gt;genome&lt;/strong&gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> 
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     245            <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
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