バージョン 14 から バージョン 16 における更新: チケット #47

差分発生行の前後
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更新日時:
2008/01/28 17:32:39 (17 年 前)
更新者:
h-morita
コメント:

SOAP のサンプル部分の更新に失敗しておりました。 申し訳有りません。

最新のものに差し換えましたので、ご確認ください。

凡例:

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  • チケット #47 – 説明

    v14 v16  
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     155            <snippet xsi:type="xsd:string">...reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. &lt;strong&gt;Genomic&lt;/strong&gt; resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and &lt;strong&gt;genome&lt;/strong&gt;.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view and access sequence data associated with genes in their &lt;strong&gt;genomic&lt;/strong&gt; context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and...</snippet> 
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     162            <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
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    150171              <item>Abnormalities, Multiple</item> 
    … …  
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    177198              <item>Zebrafish</item> 
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    197             <snippet xsi:type="xsd:string">Comparative &lt;strong&gt;Genomic&lt;/strong&gt; Analysis Using the UCSC &lt;strong&gt;Genome&lt;/strong&gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &lt;strong&gt;genomes&lt;/strong&gt;. The University of California Santa Cruz (UCSC) &lt;strong&gt;Genome&lt;/strong&gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> 
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    199             <papers xsi:type="n1:Retrieve..Papers"> 
    200               <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
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     208            <snippet xsi:type="xsd:string">DictyMOLD-a Dictyostelium discoideum &lt;strong&gt;genome&lt;/strong&gt; browser database. SUMMARY: With the Dictyostelium &lt;strong&gt;Genome&lt;/strong&gt; Project nearing completion, we initiated the construction of a data repository for all Dictyostelium discoideum &lt;strong&gt;genomic&lt;/strong&gt; data. Up to now this database, called DictyMOLD (Dicty Map Of Linked Data), incorporates the...a perl-based browser was developed. AVAILABILITY: The DictyMOLD database is freely accessible via http://&lt;strong&gt;genome&lt;/strong&gt;.imb-jena.de/dictyostelium/ CONTACT: gernot@imb-jena.de. MeSH:Animals MeSH:Chromosome Mapping / methods...</snippet> 
     209            <papers xsi:type="n1:Retrieve..Papers"> 
     210              <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.imb-jena.de%2Fdictyostelium%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
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     215            <title xsi:type="xsd:string">Dictyostelium Genome Analysis</title> 
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    215224              <item>Chromosome Mapping</item> 
     225              <item>Database Management Systems</item> 
    216226              <item>Databases, Genetic</item> 
    217               <item>Gene Expression Profiling</item> 
    218               <item>Genome</item> 
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    230             <snippet xsi:type="xsd:string">Finding anchors for &lt;strong&gt;genomic&lt;/strong&gt; sequence comparison . Recent sequencing of the human and other mammalian &lt;strong&gt;genomes&lt;/strong&gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &lt;strong&gt;Genome&lt;/strong&gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &lt;strong&gt;Genome&lt;/strong&gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> 
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     240            <snippet xsi:type="xsd:string">u-&lt;strong&gt;Genome&lt;/strong&gt;: a database on &lt;strong&gt;genome&lt;/strong&gt; design in unicellular &lt;strong&gt;genomes&lt;/strong&gt;. Unicellular eukaryotes were among the first ones to be selected for complete &lt;strong&gt;genome&lt;/strong&gt; sequencing because of the small size of their &lt;strong&gt;genomes&lt;/strong&gt; and their interactions with humans and a broad range of animals and plants. Currently, ten completely sequenced unicellular &lt;strong&gt;genome&lt;/strong&gt; sequences have been publicly released and as the number of available unicellular genomes increases, comparative...</snippet> 
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     242              <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=sege.ntu.edu.sg%2Fwester%2Fugenome%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
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     247            <title xsi:type="xsd:string">UGenome</title> 
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     250              <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fsege.ntu.edu.sg%2Fwester%2Fugenome%2F&amp;amp;btnG=Google+Search</google> 
     251              <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fsege.ntu.edu.sg%2Fwester%2Fugenome%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista> 
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    246             <mesh_list n2:arrayType="xsd:string[4]" 
    247                 xsi:type="n2:Array"> 
    248               <item>Computational Biology</item> 
     253            <url xsi:type="xsd:string">http://sege.ntu.edu.sg/wester/ugenome/</url> 
     254            <mesh_term_list n2:arrayType="xsd:string[2]" 
     255                xsi:type="n2:Array"> 
     256              <item>Databases, Genetic</item> 
    249257              <item>Genomics</item> 
    250               <item>Isochores</item> 
    251               <item>Software</item> 
    252             </mesh_list> 
    253             <pubmed n2:arrayType="xsd:string[1]" 
    254                 xsi:type="n2:Array"> 
    255               <item>15215396</item> 
    256             </pubmed> 
    257             <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in &lt;strong&gt;genome&lt;/strong&gt; sequences . Isochores are long &lt;strong&gt;genome&lt;/strong&gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &lt;strong&gt;genome&lt;/strong&gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> 
    258             <url xsi:type="xsd:string">http://genome.cse.ucsc.edu/</url> 
    259             <papers xsi:type="n1:Retrieve..Papers"> 
    260               <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.cse.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar> 
    261               <high_wire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press> 
    262               <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus> 
    263               <bio_med_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central> 
    264             </papers> 
    265             <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 
     258            </mesh_term_list> 
    266259          </item> 
    267260        </results> 
     261        <query xsi:type="n1:Retrieve..Query"> 
     262          <expression xsi:type="xsd:string">genome</expression> 
     263          <option xsi:type="n1:Retrieve..Option"> 
     264            <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> 
     265            <order xsi:type="xsd:string">relevance</order> 
     266            <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> 
     267            <max_results xsi:type="xsd:int">3</max_results> 
     268          </option> 
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