バージョン 23 から バージョン 25 における更新: チケット #47
- 更新日時:
- 2008/02/12 12:11:46 (17 年 前)
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チケット #47 – 説明
v23 v25 68 68 * item: 検索結果単体 ( REST の場合は result ) 69 69 * rank: 検索一致ランク 70 * title: オンラインリソースタイトル 70 * title: オンラインリソースタイトル 71 * average_stars: レーティング平均値 71 72 * snippet: スニペット 72 73 * mesh_term_list: MeSH リスト … … 96 97 {{{ 97 98 <?xml version="1.0" encoding="UTF-8"?> 99 98 100 <SOAP-ENV:Envelope 101 99 102 xmlns:xsd="http://www.w3.org/2001/XMLSchema" 103 100 104 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 105 101 106 xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/" 107 102 108 SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/" 109 103 110 xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"> 111 104 112 <SOAP-ENV:Body> 113 105 114 <m:GetResourceInfoByQueryTerm xmlns:m="urn:ActionWebService"> 115 106 116 <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> 117 107 118 <max_results xsi:type="xsd:int">3</max_results> 119 108 120 <order xsi:type="xsd:string">relevance</order> 121 109 122 <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> 123 110 124 <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> 125 111 126 </m:GetResourceInfoByQueryTerm> 127 112 128 </SOAP-ENV:Body> 129 113 130 </SOAP-ENV:Envelope> 131 114 132 }}} 115 133 * レスポンス … … 123 141 env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"> 124 142 <return xsi:type="n1:Retrieve..ResultSet"> 125 <status xsi:type="n1:Retrieve..Status"> 126 <message xsi:type="xsd:string">success.</message> 127 <name xsi:type="xsd:string">Orefil::Success</name> 128 <code xsi:type="xsd:string">20000</code> 129 </status> 143 <query xsi:type="n1:Retrieve..Query"> 144 <option xsi:type="n1:Retrieve..Option"> 145 <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> 146 <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> 147 <order xsi:type="xsd:string">relevance</order> 148 <max_results xsi:type="xsd:int">3</max_results> 149 </option> 150 <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> 151 </query> 130 152 <results n2:arrayType="n1:Retrieve..Result[3]" 131 153 xmlns:n2="http://schemas.xmlsoap.org/soap/encoding/" 132 154 xsi:type="n2:Array"> 133 155 <item> 134 <pmid_list n2:arrayType="xsd:string[18]" 135 xsi:type="n2:Array"> 136 <item>18086701</item> 137 <item href="#id91473849300"></item> 138 <item>17984227</item> 139 <item>17151077</item> 140 <item>17142222</item> 141 <item>16500937</item> 142 <item>16372332</item> 143 <item>16381938</item> 144 <item>16888352</item> 145 <item>16722777</item> 146 <item href="#id91473833240"></item> 147 <item>16888348</item> 148 <item>15608236</item> 149 <item>15554057</item> 150 <item href="#id91473827280"></item> 151 <item>12519945</item> 152 <item>12045153</item> 153 <item>11932250</item> 154 </pmid_list> 155 <snippet xsi:type="xsd:string">...reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. <strong>Genomic</strong> resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and <strong>genome</strong>.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view...by making it easy to view and access sequence data associated with genes in their <strong>genomic</strong> context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and...</snippet> 156 <snippet xsi:type="xsd:string">Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet> 156 157 <papers xsi:type="n1:Retrieve..Papers"> 157 158 <highwire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</highwire_press> … … 160 161 <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> 161 162 </papers> 162 <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 163 <rank xsi:type="xsd:int">1</rank> 163 <average_stars xsi:type="xsd:double">+4</average_stars> 164 164 <pages xsi:type="n1:Retrieve..Pages"> 165 165 <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;btnG=Google+Search</google> 166 166 <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> 167 167 </pages> 168 <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 169 <rank xsi:type="xsd:int">1</rank> 168 170 <url xsi:type="xsd:string">http://genome.ucsc.edu/</url> 169 171 <mesh_term_list n2:arrayType="xsd:string[28]" … … 198 200 <item>Zebrafish</item> 199 201 </mesh_term_list> 202 <pmid_list n2:arrayType="xsd:string[15]" 203 xsi:type="n2:Array"> 204 <item>16888352</item> 205 <item>16381938</item> 206 <item>12045153</item> 207 <item>15216554</item> 208 <item>17151077</item> 209 <item>16888348</item> 210 <item>16372332</item> 211 <item>11932250</item> 212 <item>16722777</item> 213 <item>12519945</item> 214 <item>16500937</item> 215 <item>17142222</item> 216 <item>15554057</item> 217 <item>15608236</item> 218 <item>16888346</item> 219 </pmid_list> 200 220 </item> 201 221 <item> 202 <pmid_list n2:arrayType="xsd:string[2]" 203 xsi:type="n2:Array"> 204 <item>16108715</item> 205 <item>14681485</item> 206 </pmid_list> 207 <snippet xsi:type="xsd:string">Finding anchors for <strong>genomic</strong> sequence comparison. Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them, to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> 222 <snippet xsi:type="xsd:string">Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet> 208 223 <papers xsi:type="n1:Retrieve..Papers"> 209 224 <highwire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</highwire_press> … … 212 227 <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.genome.ucsc.edu%2F&amp;btnG=Search</google_scholar> 213 228 </papers> 214 <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 215 <rank xsi:type="xsd:int">2</rank> 229 <average_stars xsi:type="xsd:double">+0</average_stars> 216 230 <pages xsi:type="n1:Retrieve..Pages"> 217 231 <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;btnG=Google+Search</google> 218 232 <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> 219 233 </pages> 234 <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 235 <rank xsi:type="xsd:int">2</rank> 220 236 <url xsi:type="xsd:string">http://www.genome.ucsc.edu/</url> 221 237 <mesh_term_list n2:arrayType="xsd:string[9]" … … 231 247 <item>User-Computer Interface</item> 232 248 </mesh_term_list> 249 <pmid_list n2:arrayType="xsd:string[2]" 250 xsi:type="n2:Array"> 251 <item>14681485</item> 252 <item>16108715</item> 253 </pmid_list> 233 254 </item> 234 255 <item> 235 <pmid_list n2:arrayType="xsd:string[21]" 236 xsi:type="n2:Array"> 237 <item>18000006</item> 238 <item href="#id91473849300"></item> 239 <item>17537812</item> 240 <item>17148474</item> 241 <item>16729214</item> 242 <item>16381931</item> 243 <item href="#id91473833240"></item> 244 <item>15608235</item> 245 <item>16103655</item> 246 <item>16610137</item> 247 <item href="#id91473827280"></item> 248 <item>15189572</item> 249 <item>15123591</item> 250 <item>15123595</item> 251 <item>15123590</item> 252 <item>15078858</item> 253 <item>14681459</item> 254 <item>12519943</item> 255 <item>11890680</item> 256 <item>11752248</item> 257 <item>12385995</item> 256 <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet> 257 <papers xsi:type="n1:Retrieve..Papers"> 258 <highwire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</highwire_press> 259 <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;ds=jnl&amp;g=s&amp;t=all</scirus> 260 <biomed_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</biomed_central> 261 <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=genome.cse.ucsc.edu%2F&amp;btnG=Search</google_scholar> 262 </papers> 263 <average_stars xsi:type="xsd:double">+0</average_stars> 264 <pages xsi:type="n1:Retrieve..Pages"> 265 <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;btnG=Google+Search</google> 266 <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;kgs=0&amp;kls=1</altavista> 267 </pages> 268 <title xsi:type="xsd:string">UCSC Genome Browser Home</title> 269 <rank xsi:type="xsd:int">3</rank> 270 <url xsi:type="xsd:string">http://genome.cse.ucsc.edu/</url> 271 <mesh_term_list n2:arrayType="xsd:string[4]" 272 xsi:type="n2:Array"> 273 <item>Computational Biology</item> 274 <item>Genomics</item> 275 <item>Isochores</item> 276 <item>Software</item> 277 </mesh_term_list> 278 <pmid_list n2:arrayType="xsd:string[1]" 279 xsi:type="n2:Array"> 280 <item>15215396</item> 258 281 </pmid_list> 259 <snippet xsi:type="xsd:string">...reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. <strong>Genomic</strong> resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and <strong>genome</strong>.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view...by making it easy to view and access sequence data associated with genes in their <strong>genomic</strong> context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and...</snippet>260 <papers xsi:type="n1:Retrieve..Papers">261 <highwire_press xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=www.ensembl.org%2Findex.html&amp;andorexactfulltext=and&amp;author1=&amp;pubdate_year=&amp;volume=&amp;firstpage=&amp;src=hw&amp;searchsubmit=redo&amp;resourcetype=1&amp;search=Search&amp;fmonth=Jan&amp;fyear=1844&amp;tmonth=Dec&amp;tyear=2007&amp;fdatedef=1+January+1844&amp;tdatedef=31+Dec+2007</highwire_press>262 <scirus xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=www.ensembl.org%2Findex.html&amp;ds=jnl&amp;g=s&amp;t=all</scirus>263 <biomed_central xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=www.ensembl.org%2Findex.html&amp;chkBMCJournals=true&amp;chkCurrentOpinion=true&amp;drpFromDate=&amp;drpToDate=&amp;chkNSP=true&amp;drpAddedInLast=&amp;drpOrderBy=by+date&amp;drpPerPage=20&amp;drpAbstract=no+abstract&amp;strTempString=&amp;strSearchBoxType=bmc_boolean_results&amp;Search.x=10&amp;jou_id=&amp;Search.x=0&amp;Search.y=0&amp;Search=Search</biomed_central>264 <google_scholar xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&amp;lr=&amp;q=www.ensembl.org%2Findex.html&amp;btnG=Search</google_scholar>265 </papers>266 <title xsi:type="xsd:string">Ensembl Genome Browser</title>267 <rank xsi:type="xsd:int">3</rank>268 <pages xsi:type="n1:Retrieve..Pages">269 <google xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;btnG=Google+Search</google>270 <altavista xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;kgs=0&amp;kls=1</altavista>271 </pages>272 <url xsi:type="xsd:string">http://www.ensembl.org/index.html</url>273 <mesh_term_list n2:arrayType="xsd:string[43]"274 xsi:type="n2:Array">275 <item>ADP-Ribosylation Factors</item>276 <item>Abnormalities, Multiple</item>277 <item>Alternative Splicing</item>278 <item>Automation</item>279 <item>Carbamoyl-Phosphate Synthase I Deficiency Disease</item>280 <item>Cardiomyopathy, Dilated</item>281 <item>Chickens</item>282 <item>Chromosome Deletion</item>283 <item>Chromosome Mapping</item>284 <item>Chromosomes, Human, Pair 2</item>285 <item>Computational Biology</item>286 <item>DNA Primers</item>287 <item>Database Management Systems</item>288 <item>Databases, Factual</item>289 <item>Databases, Genetic</item>290 <item>Databases, Nucleic Acid</item>291 <item>Dog Diseases</item>292 <item>Exons</item>293 <item>Expressed Sequence Tags</item>294 <item>GTP Phosphohydrolases</item>295 <item>Genes</item>296 <item>Genetic Techniques</item>297 <item>Genome</item>298 <item>Genome, Human</item>299 <item>Genomics</item>300 <item>Glycosyltransferases</item>301 <item>Information Dissemination</item>302 <item>Information Storage and Retrieval</item>303 <item>Internet</item>304 <item>Membrane Proteins</item>305 <item>Microsatellite Repeats</item>306 <item>Models, Biological</item>307 <item>Nucleic Acid Hybridization</item>308 <item>Oligonucleotide Array Sequence Analysis</item>309 <item>Polymorphism, Single Nucleotide</item>310 <item>Promoter Regions (Genetics)</item>311 <item>Quantitative Trait Loci</item>312 <item>Regulatory Sequences, Nucleic Acid</item>313 <item>Sarcoglycans</item>314 <item>Software</item>315 <item>Systems Biology</item>316 <item>Zebrafish</item>317 <item>Zebrafish Proteins</item>318 </mesh_term_list>319 282 </item> 320 283 </results> 321 <query xsi:type="n1:Retrieve..Query"> 322 <expression xsi:type="xsd:string">#filreq(DNA.majr #combine(genome))</expression> 323 <option xsi:type="n1:Retrieve..Option"> 324 <enable_relevance_feedback xsi:type="xsd:boolean">false</enable_relevance_feedback> 325 <order xsi:type="xsd:string">relevance</order> 326 <enable_hide_unfetched xsi:type="xsd:boolean">true</enable_hide_unfetched> 327 <max_results xsi:type="xsd:int">3</max_results> 328 </option> 329 </query> 284 <status xsi:type="n1:Retrieve..Status"> 285 <name xsi:type="xsd:string">Orefil::Success</name> 286 <message xsi:type="xsd:string">success.</message> 287 <code xsi:type="xsd:string">20000</code> 288 </status> 330 289 </return> 331 290 </n1:GetResourceInfoByQueryTermResponse> 332 <item id="id91473849300"333 xsi:type="xsd:string"334 env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">18172923</item>335 <item id="id91473833240"336 xsi:type="xsd:string"337 env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">16888346</item>338 <item id="id91473827280"339 xsi:type="xsd:string"340 env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">15216554</item>341 291 </env:Body> 342 292 </env:Envelope> … … 359 309 <enable_relevance_feedback>false</enable_relevance_feedback> 360 310 </option> 361 <last_index_date> Mon Jan 28 06:40:04 +0900 2008</last_index_date>311 <last_index_date>Wed Jan 30 14:29:44 +0900 2008</last_index_date> 362 312 </query> 363 313 <results> … … 365 315 <rank>1</rank> 366 316 <title>UCSC Genome Browser Home</title> 317 <average_stars>4.0</average_stars> 367 318 <snippet> 368 ...reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. <strong>Genomic</strong> resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and <strong>genome</strong>.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view...by making it easy to view and access sequence data associated with genes in their <strong>genomic</strong> context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and...319 Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many... 369 320 </snippet> 370 321 <mesh_term_list> … … 422 373 </papers> 423 374 <pmid_list> 424 <pmid>18086701</pmid> 425 <pmid>18172923</pmid> 426 <pmid>17984227</pmid> 375 <pmid>16888352</pmid> 376 <pmid>16381938</pmid> 377 <pmid>12045153</pmid> 378 <pmid>15216554</pmid> 427 379 <pmid>17151077</pmid> 380 <pmid>16888348</pmid> 381 <pmid>16372332</pmid> 382 <pmid>11932250</pmid> 383 <pmid>16722777</pmid> 384 <pmid>12519945</pmid> 385 <pmid>16500937</pmid> 428 386 <pmid>17142222</pmid> 429 <pmid>16500937</pmid> 430 <pmid>16372332</pmid> 431 <pmid>16381938</pmid> 432 <pmid>16888352</pmid> 433 <pmid>16722777</pmid> 387 <pmid>15554057</pmid> 388 <pmid>15608236</pmid> 434 389 <pmid>16888346</pmid> 435 <pmid>16888348</pmid>436 <pmid>15608236</pmid>437 <pmid>15554057</pmid>438 <pmid>15216554</pmid>439 <pmid>12519945</pmid>440 <pmid>12045153</pmid>441 <pmid>11932250</pmid>442 390 </pmid_list> 443 391 </result> … … 445 393 <rank>2</rank> 446 394 <title>UCSC Genome Browser Home</title> 395 <average_stars>0.0</average_stars> 447 396 <snippet> 448 Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them, to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...397 Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical... 449 398 </snippet> 450 399 <mesh_term_list> … … 483 432 </papers> 484 433 <pmid_list> 434 <pmid>14681485</pmid> 485 435 <pmid>16108715</pmid> 486 <pmid>14681485</pmid>487 436 </pmid_list> 488 437 </result> 489 438 <result> 490 439 <rank>3</rank> 491 <title>Ensembl Genome Browser</title> 440 <title>UCSC Genome Browser Home</title> 441 <average_stars>0.0</average_stars> 492 442 <snippet> 493 ...reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. <strong>Genomic</strong> resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and <strong>genome</strong>.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view...by making it easy to view and access sequence data associated with genes in their <strong>genomic</strong> context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and...443 IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G... 494 444 </snippet> 495 445 <mesh_term_list> 496 <mesh_term>ADP-Ribosylation Factors</mesh_term>497 <mesh_term>Abnormalities, Multiple</mesh_term>498 <mesh_term>Alternative Splicing</mesh_term>499 <mesh_term>Automation</mesh_term>500 <mesh_term>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh_term>501 <mesh_term>Cardiomyopathy, Dilated</mesh_term>502 <mesh_term>Chickens</mesh_term>503 <mesh_term>Chromosome Deletion</mesh_term>504 <mesh_term>Chromosome Mapping</mesh_term>505 <mesh_term>Chromosomes, Human, Pair 2</mesh_term>506 446 <mesh_term>Computational Biology</mesh_term> 507 <mesh_term>DNA Primers</mesh_term>508 <mesh_term>Database Management Systems</mesh_term>509 <mesh_term>Databases, Factual</mesh_term>510 <mesh_term>Databases, Genetic</mesh_term>511 <mesh_term>Databases, Nucleic Acid</mesh_term>512 <mesh_term>Dog Diseases</mesh_term>513 <mesh_term>Exons</mesh_term>514 <mesh_term>Expressed Sequence Tags</mesh_term>515 <mesh_term>GTP Phosphohydrolases</mesh_term>516 <mesh_term>Genes</mesh_term>517 <mesh_term>Genetic Techniques</mesh_term>518 <mesh_term>Genome</mesh_term>519 <mesh_term>Genome, Human</mesh_term>520 447 <mesh_term>Genomics</mesh_term> 521 <mesh_term>Glycosyltransferases</mesh_term> 522 <mesh_term>Information Dissemination</mesh_term> 523 <mesh_term>Information Storage and Retrieval</mesh_term> 524 <mesh_term>Internet</mesh_term> 525 <mesh_term>Membrane Proteins</mesh_term> 526 <mesh_term>Microsatellite Repeats</mesh_term> 527 <mesh_term>Models, Biological</mesh_term> 528 <mesh_term>Nucleic Acid Hybridization</mesh_term> 529 <mesh_term>Oligonucleotide Array Sequence Analysis</mesh_term> 530 <mesh_term>Polymorphism, Single Nucleotide</mesh_term> 531 <mesh_term>Promoter Regions (Genetics)</mesh_term> 532 <mesh_term>Quantitative Trait Loci</mesh_term> 533 <mesh_term>Regulatory Sequences, Nucleic Acid</mesh_term> 534 <mesh_term>Sarcoglycans</mesh_term> 448 <mesh_term>Isochores</mesh_term> 535 449 <mesh_term>Software</mesh_term> 536 <mesh_term>Systems Biology</mesh_term>537 <mesh_term>Zebrafish</mesh_term>538 <mesh_term>Zebrafish Proteins</mesh_term>539 450 </mesh_term_list> 540 <url>http:// www.ensembl.org/index.html</url>451 <url>http://genome.cse.ucsc.edu/</url> 541 452 <pages> 542 453 <google> 543 http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2F www.ensembl.org%2Findex.html&btnG=Google+Search454 http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Google+Search 544 455 </google> 545 456 <altavista> 546 http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2F www.ensembl.org%2Findex.html&kgs=0&kls=1457 http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&kgs=0&kls=1 547 458 </altavista> 548 459 </pages> 549 460 <papers> 550 461 <biomed_central> 551 http://www.biomedcentral.com/search/results.asp?txtSearch1= www.ensembl.org%2Findex.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search462 http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search 552 463 </biomed_central> 553 464 <scirus> 554 http://www.scirus.com/srsapp/search?q= www.ensembl.org%2Findex.html&ds=jnl&g=s&t=all465 http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&ds=jnl&g=s&t=all 555 466 </scirus> 556 467 <highwire_press> 557 http://highwire.org/cgi/searchresults?fulltext= www.ensembl.org%2Findex.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007468 http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007 558 469 </highwire_press> 559 470 <google_scholar> 560 http://scholar.google.com/scholar?hl=en&lr=&q= www.ensembl.org%2Findex.html&btnG=Search471 http://scholar.google.com/scholar?hl=en&lr=&q=genome.cse.ucsc.edu%2F&btnG=Search 561 472 </google_scholar> 562 473 </papers> 563 474 <pmid_list> 564 <pmid>18000006</pmid> 565 <pmid>18172923</pmid> 566 <pmid>17537812</pmid> 567 <pmid>17148474</pmid> 568 <pmid>16729214</pmid> 569 <pmid>16381931</pmid> 570 <pmid>16888346</pmid> 571 <pmid>15608235</pmid> 572 <pmid>16103655</pmid> 573 <pmid>16610137</pmid> 574 <pmid>15216554</pmid> 575 <pmid>15189572</pmid> 576 <pmid>15123591</pmid> 577 <pmid>15123595</pmid> 578 <pmid>15123590</pmid> 579 <pmid>15078858</pmid> 580 <pmid>14681459</pmid> 581 <pmid>12519943</pmid> 582 <pmid>11890680</pmid> 583 <pmid>11752248</pmid> 584 <pmid>12385995</pmid> 475 <pmid>15215396</pmid> 585 476 </pmid_list> 586 477 </result>
