| 335 | | <url xsi:type="xsd:string">http://genome.cse.ucsc.edu/</url> |
| 336 | | <updated_at xsi:type="xsd:dateTime">2008-02-17T00:00:00+09:00</updated_at> |
| 337 | | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| 338 | | xsi:type="n2:Array"> |
| 339 | | <item> |
| 340 | | <name xsi:type="xsd:string">Google</name> |
| 341 | | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;btnG=Google+Search</url> |
| 342 | | </item> |
| 343 | | <item> |
| 344 | | <name xsi:type="xsd:string">AltaVista</name> |
| 345 | | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;kgs=0&amp;kls=1</url> |
| 346 | | </item> |
| 347 | | </pages> |
| 348 | | <title xsi:type="xsd:string">UCSC Genome Browser Home</title> |
| | 1079 | </item> |
| | 1080 | <item> |
| | 1081 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1082 | xsi:type="n2:Array"> |
| | 1083 | <item> |
| | 1084 | <name xsi:type="xsd:string">Google</name> |
| | 1085 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fathena.bioc.uvic.ca&btnG=Google+Search</url> |
| | 1086 | </item> |
| | 1087 | <item> |
| | 1088 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1089 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fathena.bioc.uvic.ca&kgs=0&kls=1</url> |
| | 1090 | </item> |
| | 1091 | </pages> |
| | 1092 | <id xsi:type="xsd:int">5978</id> |
| | 1093 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1094 | <mesh_term_list n2:arrayType="xsd:string[12]" |
| | 1095 | xsi:type="n2:Array"> |
| | 1096 | <item>Chromosome Mapping</item> |
| | 1097 | <item>Computer Graphics</item> |
| | 1098 | <item>DNA</item> |
| | 1099 | <item>Databases, Genetic</item> |
| | 1100 | <item>Genome, Viral</item> |
| | 1101 | <item>Programming Languages</item> |
| | 1102 | <item>Proteins</item> |
| | 1103 | <item>Sequence Alignment</item> |
| | 1104 | <item>Sequence Analysis, DNA</item> |
| | 1105 | <item>Sequence Analysis, Protein</item> |
| | 1106 | <item>Software</item> |
| | 1107 | <item>User-Computer Interface</item> |
| | 1108 | </mesh_term_list> |
| | 1109 | <title xsi:type="xsd:string">www.virology.ca - University of Victoria - VBRC</title> |
| | 1110 | <rank xsi:type="xsd:int">17</rank> |
| | 1111 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 1112 | xsi:type="n2:Array"> |
| | 1113 | <item>17244370</item> |
| | 1114 | <item>17054794</item> |
| | 1115 | <item>16772042</item> |
| | 1116 | </pmid_list> |
| | 1117 | <snippet xsi:type="xsd:string">...Protein Amino Acid Sequence Polymorphism, Single Nucleotide DNA Mutational Analysis Reference Standards Sequence Alignment Algorithms <strong>Genome</strong>, Viral Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Molecular Sequence Data Databases, Genetic Capripoxvirus Open Reading Frames DNA Chlamydophila pneumoniae Computer Graphics Programming Languages Sequence Homology, Amino Acid Base Sequence Thermoplasma Proteins Software <strong>Genome</strong>, Bacterial Databases, Genetic Sequence Analysis, Protein ... Computer Graphics Programming Languages Sequence Alignment <strong>Genome</strong>, Viral Proteins Chromosome Mapping Software Sequence Analysis, DNA User-Computer Interface Data Display Genome Genetic...</snippet> |
| | 1118 | <url xsi:type="xsd:string">http://athena.bioc.uvic.ca</url> |
| | 1119 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1120 | xsi:type="n2:Array"> |
| | 1121 | <item> |
| | 1122 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1123 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fathena.bioc.uvic.ca&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1124 | </item> |
| | 1125 | <item> |
| | 1126 | <name xsi:type="xsd:string">Scirus</name> |
| | 1127 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fathena.bioc.uvic.ca&ds=jnl&g=s&t=all</url> |
| | 1128 | </item> |
| | 1129 | <item> |
| | 1130 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1131 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fathena.bioc.uvic.ca&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1132 | </item> |
| | 1133 | <item> |
| | 1134 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1135 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fathena.bioc.uvic.ca&btnG=Search</url> |
| | 1136 | </item> |
| | 1137 | </papers> |
| | 1138 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1139 | </item> |
| | 1140 | <item> |
| | 1141 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1142 | xsi:type="n2:Array"> |
| | 1143 | <item> |
| | 1144 | <name xsi:type="xsd:string">Google</name> |
| | 1145 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&btnG=Google+Search</url> |
| | 1146 | </item> |
| | 1147 | <item> |
| | 1148 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1149 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&kgs=0&kls=1</url> |
| | 1150 | </item> |
| | 1151 | </pages> |
| | 1152 | <id xsi:type="xsd:int">9237</id> |
| | 1153 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1154 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 1155 | xsi:type="n2:Array"> |
| | 1156 | <item>Chromosome Mapping</item> |
| | 1157 | <item>Genetic Markers</item> |
| | 1158 | <item>Sequence Alignment</item> |
| | 1159 | <item>Sequence Analysis, DNA</item> |
| | 1160 | <item>Software</item> |
| | 1161 | </mesh_term_list> |
| | 1162 | <title xsi:type="xsd:string">COMPASS</title> |
| | 1163 | <rank xsi:type="xsd:int">18</rank> |
| | 1164 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1165 | xsi:type="n2:Array"> |
| | 1166 | <item>14734304</item> |
| | 1167 | </pmid_list> |
| | 1168 | <snippet xsi:type="xsd:string">...silico using the COMPASS strategy . MOTIVATION : The completion of human and mouse <strong>genome</strong> sequences provides a valuable resource for decoding other mammalian <strong>genomes</strong> . The comparative mapping by annotation and sequence similarity ( COMPASS ) strategy takes advantage of the resource and has been used in several <strong>genome</strong>-mapping projects . It uses existing comparative <strong>genome</strong> maps based on conserved regions to predict map locations of a sequence...</snippet> |
| | 1169 | <url xsi:type="xsd:string">http://titan.biotec.uiuc.edu/COMPASS/</url> |
| | 1170 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1171 | xsi:type="n2:Array"> |
| | 1172 | <item> |
| | 1173 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1174 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1175 | </item> |
| | 1176 | <item> |
| | 1177 | <name xsi:type="xsd:string">Scirus</name> |
| | 1178 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&ds=jnl&g=s&t=all</url> |
| | 1179 | </item> |
| | 1180 | <item> |
| | 1181 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1182 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1183 | </item> |
| | 1184 | <item> |
| | 1185 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1186 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Ftitan.biotec.uiuc.edu%2FCOMPASS%2F&btnG=Search</url> |
| | 1187 | </item> |
| | 1188 | </papers> |
| | 1189 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1190 | </item> |
| | 1191 | <item> |
| | 1192 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1193 | xsi:type="n2:Array"> |
| | 1194 | <item> |
| | 1195 | <name xsi:type="xsd:string">Google</name> |
| | 1196 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.synteny.net%2F&btnG=Google+Search</url> |
| | 1197 | </item> |
| | 1198 | <item> |
| | 1199 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1200 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.synteny.net%2F&kgs=0&kls=1</url> |
| | 1201 | </item> |
| | 1202 | </pages> |
| | 1203 | <id xsi:type="xsd:int">12029</id> |
| | 1204 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1205 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 1206 | xsi:type="n2:Array"> |
| | 1207 | <item>Artificial Intelligence</item> |
| | 1208 | <item>Bacteriophages</item> |
| | 1209 | <item>Chromosome Mapping</item> |
| | 1210 | <item>Cluster Analysis</item> |
| | 1211 | <item>Genome, Viral</item> |
| | 1212 | <item>Multigene Family</item> |
| | 1213 | <item>Sequence Analysis, DNA</item> |
| | 1214 | </mesh_term_list> |
| | 1215 | <title xsi:type="xsd:string">SyntenyAnalyser</title> |
| | 1216 | <rank xsi:type="xsd:int">19</rank> |
| | 1217 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1218 | xsi:type="n2:Array"> |
| | 1219 | <item>17570149</item> |
| | 1220 | </pmid_list> |
| | 1221 | <snippet xsi:type="xsd:string">Gene function prediction based on <strong>genomic</strong> context clustering and discriminative learning : an application to bacteriophages . BACKGROUND : Existing methods...and discriminative learning : an application to bacteriophages . BACKGROUND : Existing methods for whole-<strong>genome</strong> comparisons require prior knowledge of related species and provide little automation in...related species and provide little automation in the function prediction process . Bacteriophage <strong>genomes</strong> are an example that cannot be easily analyzed by these methods . This...</snippet> |
| | 1222 | <url xsi:type="xsd:string">http://www.synteny.net/</url> |
| | 1223 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1224 | xsi:type="n2:Array"> |
| | 1225 | <item> |
| | 1226 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1227 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.synteny.net%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1228 | </item> |
| | 1229 | <item> |
| | 1230 | <name xsi:type="xsd:string">Scirus</name> |
| | 1231 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.synteny.net%2F&ds=jnl&g=s&t=all</url> |
| | 1232 | </item> |
| | 1233 | <item> |
| | 1234 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1235 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.synteny.net%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1236 | </item> |
| | 1237 | <item> |
| | 1238 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1239 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.synteny.net%2F&btnG=Search</url> |
| | 1240 | </item> |
| | 1241 | </papers> |
| | 1242 | <average_stars xsi:type="xsd:double">+0</average_stars> |
| | 1243 | </item> |
| | 1244 | <item> |
| | 1245 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1246 | xsi:type="n2:Array"> |
| | 1247 | <item> |
| | 1248 | <name xsi:type="xsd:string">Google</name> |
| | 1249 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&btnG=Google+Search</url> |
| | 1250 | </item> |
| | 1251 | <item> |
| | 1252 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1253 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&kgs=0&kls=1</url> |
| | 1254 | </item> |
| | 1255 | </pages> |
| | 1256 | <id xsi:type="xsd:int">4260</id> |
| | 1257 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1258 | <mesh_term_list n2:arrayType="xsd:string[2]" |
| | 1259 | xsi:type="n2:Array"> |
| | 1260 | <item>DNA Transposable Elements</item> |
| | 1261 | <item>Zea mays</item> |
| | 1262 | </mesh_term_list> |
| | 1263 | <title xsi:type="xsd:string">FY 2001 Plant Genome Awards</title> |
| | 1264 | <rank xsi:type="xsd:int">20</rank> |
| | 1265 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1266 | xsi:type="n2:Array"> |
| | 1267 | <item>12021846</item> |
| | 1268 | </pmid_list> |
| | 1269 | <snippet xsi:type="xsd:string">...the model genetic system for plants over the past decade . With a fully sequenced <strong>genome</strong> , short generation time and small size , studies of Arabidopsis have provided plant scientists with...gov/bio/pubs/awards/genome01 . htm ) to provide grass researchers with essential tools for <strong>genome</strong> analysis . Because grain crops are such a closely related group , it is hoped that...</snippet> |
| | 1270 | <url xsi:type="xsd:string">http://www.nsf.gov/bio/pubs/awards/genome01.htm</url> |
| | 1271 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1272 | xsi:type="n2:Array"> |
| | 1273 | <item> |
| | 1274 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1275 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1276 | </item> |
| | 1277 | <item> |
| | 1278 | <name xsi:type="xsd:string">Scirus</name> |
| | 1279 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&ds=jnl&g=s&t=all</url> |
| | 1280 | </item> |
| | 1281 | <item> |
| | 1282 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1283 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1284 | </item> |
| | 1285 | <item> |
| | 1286 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1287 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.nsf.gov%2Fbio%2Fpubs%2Fawards%2Fgenome01.htm&btnG=Search</url> |
| | 1288 | </item> |
| | 1289 | </papers> |
| | 1290 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1291 | </item> |
| | 1292 | <item> |
| | 1293 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1294 | xsi:type="n2:Array"> |
| | 1295 | <item> |
| | 1296 | <name xsi:type="xsd:string">Google</name> |
| | 1297 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.gmod.org%2F&btnG=Google+Search</url> |
| | 1298 | </item> |
| | 1299 | <item> |
| | 1300 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1301 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.gmod.org%2F&kgs=0&kls=1</url> |
| | 1302 | </item> |
| | 1303 | </pages> |
| | 1304 | <id xsi:type="xsd:int">2475</id> |
| | 1305 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1306 | <mesh_term_list n2:arrayType="xsd:string[12]" |
| | 1307 | xsi:type="n2:Array"> |
| | 1308 | <item>Algorithms</item> |
| | 1309 | <item>Chromosome Mapping</item> |
| | 1310 | <item>Computational Biology</item> |
| | 1311 | <item>Database Management Systems</item> |
| | 1312 | <item>Databases, Genetic</item> |
| | 1313 | <item>Genome</item> |
| | 1314 | <item>Information Storage and Retrieval</item> |
| | 1315 | <item>Sequence Alignment</item> |
| | 1316 | <item>Sequence Analysis, DNA</item> |
| | 1317 | <item>Software</item> |
| | 1318 | <item>Synteny</item> |
| | 1319 | <item>User-Computer Interface</item> |
| | 1320 | </mesh_term_list> |
| | 1321 | <title xsi:type="xsd:string">Main Page - GMOD</title> |
| | 1322 | <rank xsi:type="xsd:int">21</rank> |
| | 1323 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 1324 | xsi:type="n2:Array"> |
| | 1325 | <item>17646315</item> |
| | 1326 | <item>15994196</item> |
| | 1327 | <item>12368253</item> |
| | 1328 | </pmid_list> |
| | 1329 | <snippet xsi:type="xsd:string">A Chado case study: an ontology-based modular schema for representing <strong>genome</strong>-associated biological information. MOTIVATION: A few years ago, FlyBase undertook to design a new database...undertook to design a new database schema to store Drosophila data. It would fully integrate <strong>genomic</strong> sequence and annotation data with bibliographic, genetic, phenotypic and molecular data from the literature representing...</snippet> |
| | 1330 | <url xsi:type="xsd:string">http://www.gmod.org/</url> |
| | 1331 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1332 | xsi:type="n2:Array"> |
| | 1333 | <item> |
| | 1334 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1335 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.gmod.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1336 | </item> |
| | 1337 | <item> |
| | 1338 | <name xsi:type="xsd:string">Scirus</name> |
| | 1339 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.gmod.org%2F&ds=jnl&g=s&t=all</url> |
| | 1340 | </item> |
| | 1341 | <item> |
| | 1342 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1343 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.gmod.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1344 | </item> |
| | 1345 | <item> |
| | 1346 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1347 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.gmod.org%2F&btnG=Search</url> |
| | 1348 | </item> |
| | 1349 | </papers> |
| | 1350 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1351 | </item> |
| | 1352 | <item> |
| | 1353 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1354 | xsi:type="n2:Array"> |
| | 1355 | <item> |
| | 1356 | <name xsi:type="xsd:string">Google</name> |
| | 1357 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&btnG=Google+Search</url> |
| | 1358 | </item> |
| | 1359 | <item> |
| | 1360 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1361 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&kgs=0&kls=1</url> |
| | 1362 | </item> |
| | 1363 | </pages> |
| | 1364 | <id xsi:type="xsd:int">206</id> |
| | 1365 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1366 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 1367 | xsi:type="n2:Array"> |
| | 1368 | <item>DNA, Bacterial</item> |
| | 1369 | <item>Evolution, Molecular</item> |
| | 1370 | <item>Helicobacter pylori</item> |
| | 1371 | <item>Sequence Alignment</item> |
| | 1372 | <item>Sequence Analysis, DNA</item> |
| | 1373 | <item>Software</item> |
| | 1374 | </mesh_term_list> |
| | 1375 | <title xsi:type="xsd:string">CGAT: Comparative Genome Analysis Tool</title> |
| | 1376 | <rank xsi:type="xsd:int">22</rank> |
| | 1377 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1378 | xsi:type="n2:Array"> |
| | 1379 | <item>17062155</item> |
| | 1380 | </pmid_list> |
| | 1381 | <snippet xsi:type="xsd:string">CGAT : a comparative <strong>genome</strong> analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related <strong>genomes</strong> . BACKGROUND : The recent accumulation of closely related <strong>genomic</strong> sequences provides a valuable resource for the elucidation of the evolutionary histories of...calculation and visualization tools have been developed to date , the analysis of complex <strong>genomic</strong> changes , such as large insertions , deletions , inversions , translocations and duplications , still presents certain difficulties . RESULTS : We have developed a comparative <strong>genome</strong> analysis tool , named CGAT , which allows detailed comparisons of closely related bacteria-sized...</snippet> |
| | 1382 | <url xsi:type="xsd:string">http://mbgd.nibb.ac.jp/CGAT/</url> |
| | 1383 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1384 | xsi:type="n2:Array"> |
| | 1385 | <item> |
| | 1386 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1387 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1388 | </item> |
| | 1389 | <item> |
| | 1390 | <name xsi:type="xsd:string">Scirus</name> |
| | 1391 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&ds=jnl&g=s&t=all</url> |
| | 1392 | </item> |
| | 1393 | <item> |
| | 1394 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1395 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1396 | </item> |
| | 1397 | <item> |
| | 1398 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1399 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fmbgd.nibb.ac.jp%2FCGAT%2F&btnG=Search</url> |
| | 1400 | </item> |
| | 1401 | </papers> |
| | 1402 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1403 | </item> |
| | 1404 | <item> |
| | 1405 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1406 | xsi:type="n2:Array"> |
| | 1407 | <item> |
| | 1408 | <name xsi:type="xsd:string">Google</name> |
| | 1409 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&btnG=Google+Search</url> |
| | 1410 | </item> |
| | 1411 | <item> |
| | 1412 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1413 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&kgs=0&kls=1</url> |
| | 1414 | </item> |
| | 1415 | </pages> |
| | 1416 | <id xsi:type="xsd:int">10781</id> |
| | 1417 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1418 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 1419 | xsi:type="n2:Array"> |
| | 1420 | <item>Chromosome Mapping</item> |
| | 1421 | <item>Databases, Genetic</item> |
| | 1422 | <item>Genomics</item> |
| | 1423 | <item>Sequence Analysis, DNA</item> |
| | 1424 | <item>Software</item> |
| | 1425 | <item>User-Computer Interface</item> |
| | 1426 | <item>Vertebrates</item> |
| | 1427 | </mesh_term_list> |
| | 1428 | <title xsi:type="xsd:string">Vega Genome Browser</title> |
| | 1429 | <rank xsi:type="xsd:int">23</rank> |
| | 1430 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 1431 | xsi:type="n2:Array"> |
| | 1432 | <item>15608237</item> |
| | 1433 | <item>15123593</item> |
| | 1434 | <item>15975227</item> |
| | 1435 | </pmid_list> |
| | 1436 | <snippet xsi:type="xsd:string">VEGA , the <strong>genome</strong> browser with a difference . The Vertebrate Genome Annotation ( Vega ) database is a...VEGA , the genome browser with a difference . The Vertebrate <strong>Genome</strong> Annotation ( Vega ) database is a community resource for browsing manual annotation from...a community resource for browsing manual annotation from a variety of vertebrate <strong>genomes</strong> of finished sequence ( http : //vega . sanger . ac . uk ) . Vega is different from...</snippet> |
| | 1437 | <url xsi:type="xsd:string">http://vega.sanger.ac.uk/index.html</url> |
| | 1438 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1439 | xsi:type="n2:Array"> |
| | 1440 | <item> |
| | 1441 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1442 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1443 | </item> |
| | 1444 | <item> |
| | 1445 | <name xsi:type="xsd:string">Scirus</name> |
| | 1446 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&ds=jnl&g=s&t=all</url> |
| | 1447 | </item> |
| | 1448 | <item> |
| | 1449 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1450 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1451 | </item> |
| | 1452 | <item> |
| | 1453 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1454 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fvega.sanger.ac.uk%2Findex.html&btnG=Search</url> |
| | 1455 | </item> |
| | 1456 | </papers> |
| | 1457 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1458 | </item> |
| | 1459 | <item> |
| | 1460 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1461 | xsi:type="n2:Array"> |
| | 1462 | <item> |
| | 1463 | <name xsi:type="xsd:string">Google</name> |
| | 1464 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&btnG=Google+Search</url> |
| | 1465 | </item> |
| | 1466 | <item> |
| | 1467 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1468 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&kgs=0&kls=1</url> |
| | 1469 | </item> |
| | 1470 | </pages> |
| | 1471 | <id xsi:type="xsd:int">10264</id> |
| | 1472 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1473 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 1474 | xsi:type="n2:Array"> |
| | 1475 | <item>DNA Transposable Elements</item> |
| | 1476 | <item>Proteins</item> |
| | 1477 | <item>Variation (Genetics)</item> |
| | 1478 | <item>Vertebrates</item> |
| | 1479 | </mesh_term_list> |
| | 1480 | <title xsi:type="xsd:string">ScrapYard Overview</title> |
| | 1481 | <rank xsi:type="xsd:int">24</rank> |
| | 1482 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1483 | xsi:type="n2:Array"> |
| | 1484 | <item>12868608</item> |
| | 1485 | </pmid_list> |
| | 1486 | <snippet xsi:type="xsd:string">...and vertebrate protein diversity . Interspersed repetitive sequences are major components of eukaryotic <strong>genomes</strong> . Repetitive elements comprise about 50% of the mammalian genome . They interact with...components of eukaryotic genomes . Repetitive elements comprise about 50% of the mammalian <strong>genome</strong> . They interact with the whole genome and influence its evolution . Repetitive elements...</snippet> |
| | 1487 | <url xsi:type="xsd:string">http://warta.bio.psu.edu/ScrapYard/</url> |
| | 1488 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1489 | xsi:type="n2:Array"> |
| | 1490 | <item> |
| | 1491 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1492 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1493 | </item> |
| | 1494 | <item> |
| | 1495 | <name xsi:type="xsd:string">Scirus</name> |
| | 1496 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&ds=jnl&g=s&t=all</url> |
| | 1497 | </item> |
| | 1498 | <item> |
| | 1499 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1500 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1501 | </item> |
| | 1502 | <item> |
| | 1503 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1504 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwarta.bio.psu.edu%2FScrapYard%2F&btnG=Search</url> |
| | 1505 | </item> |
| | 1506 | </papers> |
| | 1507 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1508 | </item> |
| | 1509 | <item> |
| | 1510 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1511 | xsi:type="n2:Array"> |
| | 1512 | <item> |
| | 1513 | <name xsi:type="xsd:string">Google</name> |
| | 1514 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&btnG=Google+Search</url> |
| | 1515 | </item> |
| | 1516 | <item> |
| | 1517 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1518 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&kgs=0&kls=1</url> |
| | 1519 | </item> |
| | 1520 | </pages> |
| | 1521 | <id xsi:type="xsd:int">11243</id> |
| | 1522 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1523 | <mesh_term_list n2:arrayType="xsd:string[10]" |
| | 1524 | xsi:type="n2:Array"> |
| | 1525 | <item>Chromosomes</item> |
| | 1526 | <item>DNA</item> |
| | 1527 | <item>Databases, Factual</item> |
| | 1528 | <item>Databases, Nucleic Acid</item> |
| | 1529 | <item>Genes, Bacterial</item> |
| | 1530 | <item>Genome</item> |
| | 1531 | <item>Grasshoppers</item> |
| | 1532 | <item>Information Storage and Retrieval</item> |
| | 1533 | <item>Sequence Analysis, DNA</item> |
| | 1534 | <item>Software</item> |
| | 1535 | </mesh_term_list> |
| | 1536 | <title xsi:type="xsd:string">DDBJ:DNA Data Bank of Japan</title> |
| | 1537 | <rank xsi:type="xsd:int">25</rank> |
| | 1538 | <pmid_list n2:arrayType="xsd:string[10]" |
| | 1539 | xsi:type="n2:Array"> |
| | 1540 | <item>9847134</item> |
| | 1541 | <item>14681352</item> |
| | 1542 | <item>10592172</item> |
| | 1543 | <item>17406993</item> |
| | 1544 | <item>15608189</item> |
| | 1545 | <item>9399792</item> |
| | 1546 | <item>12519938</item> |
| | 1547 | <item href="#id31038800"></item> |
| | 1548 | <item>16381940</item> |
| | 1549 | <item>17108353</item> |
| | 1550 | </pmid_list> |
| | 1551 | <snippet xsi:type="xsd:string">...The released data contain honeybee expressed sequence tags ( ESTs ) , re-examined and re-annotated complete <strong>genome</strong> data of Escherichia coli K-12 W3110 , medaka WGS and human MGA . We also systematically...and human MGA . We also systematically evaluated and classified the genes in the complete bacterial <strong>genomes</strong> submitted to the International Nucleotide Sequence Database Collaboration ( INSDC , http : //insdc . org ) that is composed...</snippet> |
| | 1552 | <url xsi:type="xsd:string">http://www.ddbj.nig.ac.jp/</url> |
| | 1553 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1554 | xsi:type="n2:Array"> |
| | 1555 | <item> |
| | 1556 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1557 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1558 | </item> |
| | 1559 | <item> |
| | 1560 | <name xsi:type="xsd:string">Scirus</name> |
| | 1561 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&ds=jnl&g=s&t=all</url> |
| | 1562 | </item> |
| | 1563 | <item> |
| | 1564 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1565 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1566 | </item> |
| | 1567 | <item> |
| | 1568 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1569 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ddbj.nig.ac.jp%2F&btnG=Search</url> |
| | 1570 | </item> |
| | 1571 | </papers> |
| | 1572 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1573 | </item> |
| | 1574 | <item> |
| | 1575 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1576 | xsi:type="n2:Array"> |
| | 1577 | <item> |
| | 1578 | <name xsi:type="xsd:string">Google</name> |
| | 1579 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&btnG=Google+Search</url> |
| | 1580 | </item> |
| | 1581 | <item> |
| | 1582 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1583 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&kgs=0&kls=1</url> |
| | 1584 | </item> |
| | 1585 | </pages> |
| | 1586 | <id xsi:type="xsd:int">4009</id> |
| | 1587 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1588 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 1589 | xsi:type="n2:Array"> |
| | 1590 | <item>Carica</item> |
| | 1591 | <item>Chromosomes, Artificial, Bacterial</item> |
| | 1592 | <item>Genome, Plant</item> |
| | 1593 | <item>Sequence Analysis, DNA</item> |
| | 1594 | <item>Trees</item> |
| | 1595 | </mesh_term_list> |
| | 1596 | <title xsi:type="xsd:string">Papaya BAC-End Sequences Library</title> |
| | 1597 | <rank xsi:type="xsd:int">26</rank> |
| | 1598 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1599 | xsi:type="n2:Array"> |
| | 1600 | <item>16703363</item> |
| | 1601 | </pmid_list> |
| | 1602 | <snippet xsi:type="xsd:string">...sequences reveals first insights into the organization of a fruit tree <strong>genome</strong> . Papaya ( Carica papaya L . ) is a major tree fruit crop of tropical and subtropical regions with an estimated <strong>genome</strong> size of 372 Mbp . We present the analysis of 4.7...Mbp . We present the analysis of 4.7% of the papaya <strong>genome</strong> based on BAC end sequences ( BESs ) representing 17 million high-quality...</snippet> |
| | 1603 | <url xsi:type="xsd:string">http://genomics.hawaii.edu/papaya/BES/</url> |
| | 1604 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1605 | xsi:type="n2:Array"> |
| | 1606 | <item> |
| | 1607 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1608 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1609 | </item> |
| | 1610 | <item> |
| | 1611 | <name xsi:type="xsd:string">Scirus</name> |
| | 1612 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&ds=jnl&g=s&t=all</url> |
| | 1613 | </item> |
| | 1614 | <item> |
| | 1615 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1616 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1617 | </item> |
| | 1618 | <item> |
| | 1619 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1620 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenomics.hawaii.edu%2Fpapaya%2FBES%2F&btnG=Search</url> |
| | 1621 | </item> |
| | 1622 | </papers> |
| | 1623 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1624 | </item> |
| | 1625 | <item> |
| | 1626 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1627 | xsi:type="n2:Array"> |
| | 1628 | <item> |
| | 1629 | <name xsi:type="xsd:string">Google</name> |
| | 1630 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fsigma.bccrc.ca%2F&btnG=Google+Search</url> |
| | 1631 | </item> |
| | 1632 | <item> |
| | 1633 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1634 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fsigma.bccrc.ca%2F&kgs=0&kls=1</url> |
| | 1635 | </item> |
| | 1636 | </pages> |
| | 1637 | <id xsi:type="xsd:int">4196</id> |
| | 1638 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1639 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 1640 | xsi:type="n2:Array"> |
| | 1641 | <item>DNA, Neoplasm</item> |
| | 1642 | <item>Databases, Factual</item> |
| | 1643 | <item>Genomics</item> |
| | 1644 | <item>Neoplasms</item> |
| | 1645 | <item>Oligonucleotide Array Sequence Analysis</item> |
| | 1646 | <item>Software</item> |
| | 1647 | </mesh_term_list> |
| | 1648 | <title xsi:type="xsd:string">SIGMA: System for Integrative Genomic Microarray Analysis</title> |
| | 1649 | <rank xsi:type="xsd:int">27</rank> |
| | 1650 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1651 | xsi:type="n2:Array"> |
| | 1652 | <item>17192189</item> |
| | 1653 | </pmid_list> |
| | 1654 | <snippet xsi:type="xsd:string">SIGMA : a system for integrative <strong>genomic</strong> microarray analysis of cancer <strong>genomes</strong> . BACKGROUND : The prevalence of high resolution profiling of <strong>genomes</strong> has created a need for the integrative analysis of information generated from...Thomson JJ Davies Genes, myc Nucleic Acid Hybridization Cell Line, Tumor Humans <strong>Genomics</strong> Gene Dosage Genes, erbB-1 S100 Proteins DNA Methylation <strong>Genome</strong> Neoplasms Annexin A2 Software Adenocarcinoma Oligonucleotide Array Sequence Analysis Databases, Factual DNA, Neoplasm Lung Neoplasms Software <strong>Genomics</strong> Oligonucleotide Array Sequence Analysis Databases, Factual ..., Neoplasm Neoplasms Nucleic Acid Hybridization Microarray Analysis Molecular Probe Techniques Biology Medical...</snippet> |
| | 1655 | <url xsi:type="xsd:string">http://sigma.bccrc.ca/</url> |
| | 1656 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1657 | xsi:type="n2:Array"> |
| | 1658 | <item> |
| | 1659 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1660 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fsigma.bccrc.ca%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1661 | </item> |
| | 1662 | <item> |
| | 1663 | <name xsi:type="xsd:string">Scirus</name> |
| | 1664 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fsigma.bccrc.ca%2F&ds=jnl&g=s&t=all</url> |
| | 1665 | </item> |
| | 1666 | <item> |
| | 1667 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1668 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fsigma.bccrc.ca%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1669 | </item> |
| | 1670 | <item> |
| | 1671 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1672 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fsigma.bccrc.ca%2F&btnG=Search</url> |
| | 1673 | </item> |
| | 1674 | </papers> |
| | 1675 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1676 | </item> |
| | 1677 | <item> |
| | 1678 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1679 | xsi:type="n2:Array"> |
| | 1680 | <item> |
| | 1681 | <name xsi:type="xsd:string">Google</name> |
| | 1682 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&btnG=Google+Search</url> |
| | 1683 | </item> |
| | 1684 | <item> |
| | 1685 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1686 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&kgs=0&kls=1</url> |
| | 1687 | </item> |
| | 1688 | </pages> |
| | 1689 | <id xsi:type="xsd:int">9729</id> |
| | 1690 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1691 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 1692 | xsi:type="n2:Array"> |
| | 1693 | <item>Databases, Genetic</item> |
| | 1694 | <item>Genome, Human</item> |
| | 1695 | <item>Internet</item> |
| | 1696 | <item>Sequence Analysis, DNA</item> |
| | 1697 | <item>Software</item> |
| | 1698 | </mesh_term_list> |
| | 1699 | <title xsi:type="xsd:string">ENCODEdb Home Page</title> |
| | 1700 | <rank xsi:type="xsd:int">28</rank> |
| | 1701 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1702 | xsi:type="n2:Array"> |
| | 1703 | <item>17568011</item> |
| | 1704 | </pmid_list> |
| | 1705 | <snippet xsi:type="xsd:string">...elements in a representative chromosomal sample comprising 1% of the human <strong>genome</strong> . Data generated by members of The ENCODE Project Consortium are housed in a number of public databases , such as the UCSC <strong>Genome</strong> Browser , NCBI's Gene Expression Omnibus ( GEO ) , and EBI's ArrayExpress . As such...biologists to gather all of the ENCODE data from a particular <strong>genomic</strong> region of interest and integrate them with relevant information found in...</snippet> |
| | 1706 | <url xsi:type="xsd:string">http://research.nhgri.nih.gov/ENCODEdb/</url> |
| | 1707 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1708 | xsi:type="n2:Array"> |
| | 1709 | <item> |
| | 1710 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1711 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1712 | </item> |
| | 1713 | <item> |
| | 1714 | <name xsi:type="xsd:string">Scirus</name> |
| | 1715 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&ds=jnl&g=s&t=all</url> |
| | 1716 | </item> |
| | 1717 | <item> |
| | 1718 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1719 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1720 | </item> |
| | 1721 | <item> |
| | 1722 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1723 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fresearch.nhgri.nih.gov%2FENCODEdb%2F&btnG=Search</url> |
| | 1724 | </item> |
| | 1725 | </papers> |
| | 1726 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1727 | </item> |
| | 1728 | <item> |
| | 1729 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1730 | xsi:type="n2:Array"> |
| | 1731 | <item> |
| | 1732 | <name xsi:type="xsd:string">Google</name> |
| | 1733 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&btnG=Google+Search</url> |
| | 1734 | </item> |
| | 1735 | <item> |
| | 1736 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1737 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&kgs=0&kls=1</url> |
| | 1738 | </item> |
| | 1739 | </pages> |
| | 1740 | <id xsi:type="xsd:int">1130</id> |
| | 1741 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1742 | <mesh_term_list n2:arrayType="xsd:string[11]" |
| | 1743 | xsi:type="n2:Array"> |
| | 1744 | <item>Algorithms</item> |
| | 1745 | <item>Amino Acid Motifs</item> |
| | 1746 | <item>Caenorhabditis</item> |
| | 1747 | <item>Computational Biology</item> |
| | 1748 | <item>Genome</item> |
| | 1749 | <item>Likelihood Functions</item> |
| | 1750 | <item>Proteins</item> |
| | 1751 | <item>Regulatory Sequences, Nucleic Acid</item> |
| | 1752 | <item>Sequence Alignment</item> |
| | 1753 | <item>Sequence Analysis, DNA</item> |
| | 1754 | <item>Sequence Analysis, Protein</item> |
| | 1755 | </mesh_term_list> |
| | 1756 | <title xsi:type="xsd:string">Bioinformatics Lab at UCSD (Professor Pevzner's Group) - Software</title> |
| | 1757 | <rank xsi:type="xsd:int">29</rank> |
| | 1758 | <pmid_list n2:arrayType="xsd:string[4]" |
| | 1759 | xsi:type="n2:Array"> |
| | 1760 | <item>12376382</item> |
| | 1761 | <item>15858974</item> |
| | 1762 | <item>14534184</item> |
| | 1763 | <item>15961478</item> |
| | 1764 | </pmid_list> |
| | 1765 | <snippet xsi:type="xsd:string">De novo identification of repeat families in large <strong>genomes</strong> . MOTIVATION : De novo repeat family identification is a challenging algorithmic problem of great practical importance...family identification is a challenging algorithmic problem of great practical importance . As the number of <strong>genome</strong> sequencing projects increases , there is a pressing need to identify the repeat families present in...</snippet> |
| | 1766 | <url xsi:type="xsd:string">http://www-cse.ucsd.edu/groups/bioinformatics/software.html</url> |
| | 1767 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1768 | xsi:type="n2:Array"> |
| | 1769 | <item> |
| | 1770 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1771 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1772 | </item> |
| | 1773 | <item> |
| | 1774 | <name xsi:type="xsd:string">Scirus</name> |
| | 1775 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&ds=jnl&g=s&t=all</url> |
| | 1776 | </item> |
| | 1777 | <item> |
| | 1778 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1779 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1780 | </item> |
| | 1781 | <item> |
| | 1782 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1783 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww-cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&btnG=Search</url> |
| | 1784 | </item> |
| | 1785 | </papers> |
| | 1786 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1787 | </item> |
| | 1788 | <item> |
| | 1789 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1790 | xsi:type="n2:Array"> |
| | 1791 | <item> |
| | 1792 | <name xsi:type="xsd:string">Google</name> |
| | 1793 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&btnG=Google+Search</url> |
| | 1794 | </item> |
| | 1795 | <item> |
| | 1796 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1797 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&kgs=0&kls=1</url> |
| | 1798 | </item> |
| | 1799 | </pages> |
| | 1800 | <id xsi:type="xsd:int">5127</id> |
| | 1801 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1802 | <mesh_term_list n2:arrayType="xsd:string[16]" |
| | 1803 | xsi:type="n2:Array"> |
| | 1804 | <item>Acetylcholinesterase</item> |
| | 1805 | <item>Chromosomes</item> |
| | 1806 | <item>Chromosomes, Human, Pair 7</item> |
| | 1807 | <item>Computational Biology</item> |
| | 1808 | <item>Computer Graphics</item> |
| | 1809 | <item>DNA</item> |
| | 1810 | <item>Databases, Genetic</item> |
| | 1811 | <item>Enterobacteriaceae</item> |
| | 1812 | <item>Evolution, Molecular</item> |
| | 1813 | <item>Genome, Bacterial</item> |
| | 1814 | <item>Genomics</item> |
| | 1815 | <item>Internet</item> |
| | 1816 | <item>Receptors, Transferrin</item> |
| | 1817 | <item>Sequence Alignment</item> |
| | 1818 | <item>Sequence Analysis, DNA</item> |
| | 1819 | <item>Software</item> |
| | 1820 | </mesh_term_list> |
| | 1821 | <title xsi:type="xsd:string">CCGB: Miller Lab</title> |
| | 1822 | <rank xsi:type="xsd:int">30</rank> |
| | 1823 | <pmid_list n2:arrayType="xsd:string[7]" |
| | 1824 | xsi:type="n2:Array"> |
| | 1825 | <item>12671007</item> |
| | 1826 | <item>15590941</item> |
| | 1827 | <item>12824357</item> |
| | 1828 | <item>11239002</item> |
| | 1829 | <item>10779500</item> |
| | 1830 | <item>12824359</item> |
| | 1831 | <item>12504859</item> |
| | 1832 | </pmid_list> |
| | 1833 | <snippet xsi:type="xsd:string">...and detecting functional regulatory elements . With a growing number of partly or fully sequenced vertebrate <strong>genomes</strong> , effective tools for performing multiple comparisons are required to accurately and efficiently assist biological discoveries...transcription factor binding sites identified with Mulan/multiTF can be integrated and overlaid with extensive <strong>genome</strong> annotation data using GALA . Local multiple alignments computed by Mulan ensure reliable representation of short...</snippet> |
| | 1834 | <url xsi:type="xsd:string">http://www.bx.psu.edu/miller_lab/</url> |
| | 1835 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1836 | xsi:type="n2:Array"> |
| | 1837 | <item> |
| | 1838 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1839 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1840 | </item> |
| | 1841 | <item> |
| | 1842 | <name xsi:type="xsd:string">Scirus</name> |
| | 1843 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&ds=jnl&g=s&t=all</url> |
| | 1844 | </item> |
| | 1845 | <item> |
| | 1846 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1847 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1848 | </item> |
| | 1849 | <item> |
| | 1850 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1851 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.bx.psu.edu%2Fmiller_lab%2F&btnG=Search</url> |
| | 1852 | </item> |
| | 1853 | </papers> |
| | 1854 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1855 | </item> |
| | 1856 | <item> |
| | 1857 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1858 | xsi:type="n2:Array"> |
| | 1859 | <item> |
| | 1860 | <name xsi:type="xsd:string">Google</name> |
| | 1861 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgib.genes.nig.ac.jp%2F&btnG=Google+Search</url> |
| | 1862 | </item> |
| | 1863 | <item> |
| | 1864 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1865 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgib.genes.nig.ac.jp%2F&kgs=0&kls=1</url> |
| | 1866 | </item> |
| | 1867 | </pages> |
| | 1868 | <id xsi:type="xsd:int">3688</id> |
| | 1869 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1870 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 1871 | xsi:type="n2:Array"> |
| | 1872 | <item>Bacteria</item> |
| | 1873 | <item>Databases, Genetic</item> |
| | 1874 | <item>Databases, Nucleic Acid</item> |
| | 1875 | <item>Genes, Bacterial</item> |
| | 1876 | <item>Genetics, Microbial</item> |
| | 1877 | <item>Genome</item> |
| | 1878 | <item>Genome, Bacterial</item> |
| | 1879 | <item>Sequence Analysis, DNA</item> |
| | 1880 | </mesh_term_list> |
| | 1881 | <title xsi:type="xsd:string">Genome Information Broker</title> |
| | 1882 | <rank xsi:type="xsd:int">31</rank> |
| | 1883 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 1884 | xsi:type="n2:Array"> |
| | 1885 | <item>11752256</item> |
| | 1886 | <item href="#id31038800"></item> |
| | 1887 | <item>17166861</item> |
| | 1888 | </pmid_list> |
| | 1889 | <snippet xsi:type="xsd:string">...of new genes : Gene Trek in Prokaryote Space ( GTPS ) . A large number of complete microorganism <strong>genomes</strong> has been sequenced and submitted to the public database and then incorporated into our complete...has been sequenced and submitted to the public database and then incorporated into our complete <strong>genome</strong> database , <strong>Genome</strong> Information Broker ( GIB , http : //gib . genes . nig . ac . jp/ ) . However , when comparative genomics is carried...</snippet> |
| | 1890 | <url xsi:type="xsd:string">http://gib.genes.nig.ac.jp/</url> |
| | 1891 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1892 | xsi:type="n2:Array"> |
| | 1893 | <item> |
| | 1894 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1895 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgib.genes.nig.ac.jp%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1896 | </item> |
| | 1897 | <item> |
| | 1898 | <name xsi:type="xsd:string">Scirus</name> |
| | 1899 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgib.genes.nig.ac.jp%2F&ds=jnl&g=s&t=all</url> |
| | 1900 | </item> |
| | 1901 | <item> |
| | 1902 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1903 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgib.genes.nig.ac.jp%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1904 | </item> |
| | 1905 | <item> |
| | 1906 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1907 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgib.genes.nig.ac.jp%2F&btnG=Search</url> |
| | 1908 | </item> |
| | 1909 | </papers> |
| | 1910 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1911 | </item> |
| | 1912 | <item> |
| | 1913 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1914 | xsi:type="n2:Array"> |
| | 1915 | <item> |
| | 1916 | <name xsi:type="xsd:string">Google</name> |
| | 1917 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&btnG=Google+Search</url> |
| | 1918 | </item> |
| | 1919 | <item> |
| | 1920 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1921 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&kgs=0&kls=1</url> |
| | 1922 | </item> |
| | 1923 | </pages> |
| | 1924 | <id xsi:type="xsd:int">5373</id> |
| | 1925 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1926 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 1927 | xsi:type="n2:Array"> |
| | 1928 | <item>Angiosperms</item> |
| | 1929 | <item>Cell Nucleus</item> |
| | 1930 | <item>DNA, Plant</item> |
| | 1931 | <item>Genome, Plant</item> |
| | 1932 | </mesh_term_list> |
| | 1933 | <title xsi:type="xsd:string">Plant DNA C-Value Database Conference</title> |
| | 1934 | <rank xsi:type="xsd:int">32</rank> |
| | 1935 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1936 | xsi:type="n2:Array"> |
| | 1937 | <item href="#id29874650"></item> |
| | 1938 | </pmid_list> |
| | 1939 | <snippet xsi:type="xsd:string">...of Botany 87: 719-728.Vision TJ, Brown DG, Tanksley SD. 2000. The origins of <strong>genomic</strong> duplications in Arabidopsis. Science 290: 2114-2117.If you have comments and/or suggestions contact the DNA C-value administrator© Copyright (2004), Board of Trustees of the Royal Botanic Gardens, Kew MD Bennett IJ Leitch BJ Zonneveld DNA, Plant <strong>Genome</strong>, Plant Flow Cytometry Cell Nucleus Angiosperms ..., Plant <strong>Genome</strong>, Plant Cell Nucleus Angiosperms Organelles Genome Intracellular Space DNA Cytoplasmic Structures Cytoplasm Nucleic Acids Cellular...</snippet> |
| | 1940 | <url xsi:type="xsd:string">http://data.kew.org/cvalues/pgsm/index.html</url> |
| | 1941 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1942 | xsi:type="n2:Array"> |
| | 1943 | <item> |
| | 1944 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1945 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1946 | </item> |
| | 1947 | <item> |
| | 1948 | <name xsi:type="xsd:string">Scirus</name> |
| | 1949 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&ds=jnl&g=s&t=all</url> |
| | 1950 | </item> |
| | 1951 | <item> |
| | 1952 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 1953 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 1954 | </item> |
| | 1955 | <item> |
| | 1956 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 1957 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fpgsm%2Findex.html&btnG=Search</url> |
| | 1958 | </item> |
| | 1959 | </papers> |
| | 1960 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 1961 | </item> |
| | 1962 | <item> |
| | 1963 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 1964 | xsi:type="n2:Array"> |
| | 1965 | <item> |
| | 1966 | <name xsi:type="xsd:string">Google</name> |
| | 1967 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&btnG=Google+Search</url> |
| | 1968 | </item> |
| | 1969 | <item> |
| | 1970 | <name xsi:type="xsd:string">AltaVista</name> |
| | 1971 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&kgs=0&kls=1</url> |
| | 1972 | </item> |
| | 1973 | </pages> |
| | 1974 | <id xsi:type="xsd:int">8024</id> |
| | 1975 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 1976 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 1977 | xsi:type="n2:Array"> |
| | 1978 | <item>Algorithms</item> |
| | 1979 | <item>Chromosome Mapping</item> |
| | 1980 | <item>Linkage Disequilibrium</item> |
| | 1981 | <item>Quantitative Trait Loci</item> |
| | 1982 | <item>Sequence Analysis, DNA</item> |
| | 1983 | <item>Software</item> |
| | 1984 | </mesh_term_list> |
| | 1985 | <title xsi:type="xsd:string">REEF Home Page</title> |
| | 1986 | <rank xsi:type="xsd:int">33</rank> |
| | 1987 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 1988 | xsi:type="n2:Array"> |
| | 1989 | <item>17042935</item> |
| | 1990 | </pmid_list> |
| | 1991 | <snippet xsi:type="xsd:string">REEF : searching REgionally Enriched Features in <strong>genomes</strong> . BACKGROUND : In Eukaryotic <strong>genomes</strong> , different features including genes are not uniformly distributed . The integration of annotation information and <strong>genomic</strong> position of functional DNA elements in the Eukaryotic <strong>genomes</strong> opened the way to test novel hypotheses of higher order...opened the way to test novel hypotheses of higher order <strong>genome</strong> organization and regulation of expression . RESULTS : REEF is a new...</snippet> |
| | 1992 | <url xsi:type="xsd:string">http://telethon.bio.unipd.it/bioinfo/reef/</url> |
| | 1993 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 1994 | xsi:type="n2:Array"> |
| | 1995 | <item> |
| | 1996 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 1997 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 1998 | </item> |
| | 1999 | <item> |
| | 2000 | <name xsi:type="xsd:string">Scirus</name> |
| | 2001 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&ds=jnl&g=s&t=all</url> |
| | 2002 | </item> |
| | 2003 | <item> |
| | 2004 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2005 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2006 | </item> |
| | 2007 | <item> |
| | 2008 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2009 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Ftelethon.bio.unipd.it%2Fbioinfo%2Freef%2F&btnG=Search</url> |
| | 2010 | </item> |
| | 2011 | </papers> |
| | 2012 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2013 | </item> |
| | 2014 | <item> |
| | 2015 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2016 | xsi:type="n2:Array"> |
| | 2017 | <item> |
| | 2018 | <name xsi:type="xsd:string">Google</name> |
| | 2019 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.g-language.org%2Fwiki%2F&btnG=Google+Search</url> |
| | 2020 | </item> |
| | 2021 | <item> |
| | 2022 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2023 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.g-language.org%2Fwiki%2F&kgs=0&kls=1</url> |
| | 2024 | </item> |
| | 2025 | </pages> |
| | 2026 | <id xsi:type="xsd:int">9050</id> |
| | 2027 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2028 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2029 | xsi:type="n2:Array"> |
| | 2030 | <item>Computational Biology</item> |
| | 2031 | <item>Database Management Systems</item> |
| | 2032 | <item>Genome</item> |
| | 2033 | <item>Genomics</item> |
| | 2034 | <item>Information Storage and Retrieval</item> |
| | 2035 | <item>Sequence Analysis, DNA</item> |
| | 2036 | <item>User-Computer Interface</item> |
| | 2037 | </mesh_term_list> |
| | 2038 | <title xsi:type="xsd:string">Home · G-language Project - Documentations</title> |
| | 2039 | <rank xsi:type="xsd:int">34</rank> |
| | 2040 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 2041 | xsi:type="n2:Array"> |
| | 2042 | <item>12538262</item> |
| | 2043 | <item>16789913</item> |
| | 2044 | </pmid_list> |
| | 2045 | <snippet xsi:type="xsd:string">GPAC : benchmarking the sensitivity of <strong>genome</strong> informatics analysis to <strong>genome</strong> annotation completeness . In view of the recent explosion in genome sequence...to genome annotation completeness . In view of the recent explosion in <strong>genome</strong> sequence data , and the 200 or more complete genome sequences currently...explosion in genome sequence data , and the 200 or more complete <strong>genome</strong> sequences currently available , the importance of genome-scale bioinformatics analysis is...</snippet> |
| | 2046 | <url xsi:type="xsd:string">http://www.g-language.org/wiki/</url> |
| | 2047 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2048 | xsi:type="n2:Array"> |
| | 2049 | <item> |
| | 2050 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2051 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.g-language.org%2Fwiki%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2052 | </item> |
| | 2053 | <item> |
| | 2054 | <name xsi:type="xsd:string">Scirus</name> |
| | 2055 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.g-language.org%2Fwiki%2F&ds=jnl&g=s&t=all</url> |
| | 2056 | </item> |
| | 2057 | <item> |
| | 2058 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2059 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.g-language.org%2Fwiki%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2060 | </item> |
| | 2061 | <item> |
| | 2062 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2063 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.g-language.org%2Fwiki%2F&btnG=Search</url> |
| | 2064 | </item> |
| | 2065 | </papers> |
| | 2066 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2067 | </item> |
| | 2068 | <item> |
| | 2069 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2070 | xsi:type="n2:Array"> |
| | 2071 | <item> |
| | 2072 | <name xsi:type="xsd:string">Google</name> |
| | 2073 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&btnG=Google+Search</url> |
| | 2074 | </item> |
| | 2075 | <item> |
| | 2076 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2077 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&kgs=0&kls=1</url> |
| | 2078 | </item> |
| | 2079 | </pages> |
| | 2080 | <id xsi:type="xsd:int">807</id> |
| | 2081 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2082 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2083 | xsi:type="n2:Array"> |
| | 2084 | <item>Bacteriophages</item> |
| | 2085 | <item>Gene Expression Profiling</item> |
| | 2086 | <item>Genes, Regulator</item> |
| | 2087 | <item>Genome, Viral</item> |
| | 2088 | <item>Sequence Alignment</item> |
| | 2089 | <item>Sequence Analysis, DNA</item> |
| | 2090 | <item>Software</item> |
| | 2091 | </mesh_term_list> |
| | 2092 | <title xsi:type="xsd:string">PHIRE (LoGT)</title> |
| | 2093 | <rank xsi:type="xsd:int">35</rank> |
| | 2094 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2095 | xsi:type="n2:Array"> |
| | 2096 | <item>15033869</item> |
| | 2097 | </pmid_list> |
| | 2098 | <snippet xsi:type="xsd:string">PHIRE , a deterministic approach to reveal regulatory elements in bacteriophage <strong>genomes</strong> . MOTIVATION : In-silico <strong>genome</strong> analysis of bacteriophage <strong>genomes</strong> focuses mainly on gene discovery and functional assignment . The search...functional assignment . The search for regulatory elements contained within these <strong>genome</strong> sequences is often based on prior knowledge of other genomic...</snippet> |
| | 2099 | <url xsi:type="xsd:string">http://www.agr.kuleuven.ac.be/logt/PHIRE.htm</url> |
| | 2100 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2101 | xsi:type="n2:Array"> |
| | 2102 | <item> |
| | 2103 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2104 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2105 | </item> |
| | 2106 | <item> |
| | 2107 | <name xsi:type="xsd:string">Scirus</name> |
| | 2108 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&ds=jnl&g=s&t=all</url> |
| | 2109 | </item> |
| | 2110 | <item> |
| | 2111 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2112 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2113 | </item> |
| | 2114 | <item> |
| | 2115 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2116 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.agr.kuleuven.ac.be%2Flogt%2FPHIRE.htm&btnG=Search</url> |
| | 2117 | </item> |
| | 2118 | </papers> |
| | 2119 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2120 | </item> |
| | 2121 | <item> |
| | 2122 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2123 | xsi:type="n2:Array"> |
| | 2124 | <item> |
| | 2125 | <name xsi:type="xsd:string">Google</name> |
| | 2126 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&btnG=Google+Search</url> |
| | 2127 | </item> |
| | 2128 | <item> |
| | 2129 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2130 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&kgs=0&kls=1</url> |
| | 2131 | </item> |
| | 2132 | </pages> |
| | 2133 | <id xsi:type="xsd:int">3400</id> |
| | 2134 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2135 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 2136 | xsi:type="n2:Array"> |
| | 2137 | <item>Chromosome Mapping</item> |
| | 2138 | <item>Internet</item> |
| | 2139 | <item>Sequence Alignment</item> |
| | 2140 | <item>Sequence Analysis, DNA</item> |
| | 2141 | <item>Software</item> |
| | 2142 | <item>User-Computer Interface</item> |
| | 2143 | </mesh_term_list> |
| | 2144 | <title xsi:type="xsd:string">GenomeBlast</title> |
| | 2145 | <rank xsi:type="xsd:int">36</rank> |
| | 2146 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2147 | xsi:type="n2:Array"> |
| | 2148 | <item>17217510</item> |
| | 2149 | </pmid_list> |
| | 2150 | <snippet xsi:type="xsd:string">GenomeBlast : a web tool for small <strong>genome</strong> comparison . BACKGROUND : Comparative <strong>genomics</strong> has become an essential approach for identifying homologous gene candidates and their functions , and for studying <strong>genome</strong> evolution . There are many tools available for <strong>genome</strong> comparisons . Unfortunately , most of them are not applicable for the...the inference of phylogenetic relationships in a given set of <strong>genomes</strong> . RESULTS : GenomeBlast is a Web tool developed for comparative analysis of multiple small <strong>genomes</strong> . A new parameter called " coverage " was introduced and used along...</snippet> |
| | 2151 | <url xsi:type="xsd:string">http://bioinfo-srv1.awh.unomaha.edu/genomeblast/</url> |
| | 2152 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2153 | xsi:type="n2:Array"> |
| | 2154 | <item> |
| | 2155 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2156 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2157 | </item> |
| | 2158 | <item> |
| | 2159 | <name xsi:type="xsd:string">Scirus</name> |
| | 2160 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&ds=jnl&g=s&t=all</url> |
| | 2161 | </item> |
| | 2162 | <item> |
| | 2163 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2164 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2165 | </item> |
| | 2166 | <item> |
| | 2167 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2168 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbioinfo-srv1.awh.unomaha.edu%2Fgenomeblast%2F&btnG=Search</url> |
| | 2169 | </item> |
| | 2170 | </papers> |
| | 2171 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2172 | </item> |
| | 2173 | <item> |
| | 2174 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2175 | xsi:type="n2:Array"> |
| | 2176 | <item> |
| | 2177 | <name xsi:type="xsd:string">Google</name> |
| | 2178 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&btnG=Google+Search</url> |
| | 2179 | </item> |
| | 2180 | <item> |
| | 2181 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2182 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&kgs=0&kls=1</url> |
| | 2183 | </item> |
| | 2184 | </pages> |
| | 2185 | <id xsi:type="xsd:int">10265</id> |
| | 2186 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2187 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2188 | xsi:type="n2:Array"> |
| | 2189 | <item>DNA, Bacterial</item> |
| | 2190 | <item>Genome, Bacterial</item> |
| | 2191 | <item>Lipoproteins</item> |
| | 2192 | <item>Membrane Transport Proteins</item> |
| | 2193 | <item>Mycobacterium tuberculosis</item> |
| | 2194 | <item>Operon</item> |
| | 2195 | <item>Virulence</item> |
| | 2196 | </mesh_term_list> |
| | 2197 | <title xsi:type="xsd:string">TubercuList Web Server</title> |
| | 2198 | <rank xsi:type="xsd:int">37</rank> |
| | 2199 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 2200 | xsi:type="n2:Array"> |
| | 2201 | <item>14998516</item> |
| | 2202 | <item>10376668</item> |
| | 2203 | </pmid_list> |
| | 2204 | <snippet xsi:type="xsd:string">...resulted from disruption of the lprG-Rv1410 operon . Learning from the <strong>genome</strong> sequence of Mycobacterium tuberculosis H37Rv . Mycobacterium tuberculosis , the scourge of humanity...our understanding of the biology of the tubercle bacillus , the complete <strong>genome</strong> sequence of the most widely used strain , H37Rv , has been determined...the identification of approximately 4000 genes in the 4.41 Mb <strong>genome</strong> sequence and provided fresh insight into the biochemistry , physiology . genetics and...</snippet> |
| | 2205 | <url xsi:type="xsd:string">http://genolist.pasteur.fr/TubercuList/</url> |
| | 2206 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2207 | xsi:type="n2:Array"> |
| | 2208 | <item> |
| | 2209 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2210 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2211 | </item> |
| | 2212 | <item> |
| | 2213 | <name xsi:type="xsd:string">Scirus</name> |
| | 2214 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&ds=jnl&g=s&t=all</url> |
| | 2215 | </item> |
| | 2216 | <item> |
| | 2217 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2218 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2219 | </item> |
| | 2220 | <item> |
| | 2221 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2222 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenolist.pasteur.fr%2FTubercuList%2F&btnG=Search</url> |
| | 2223 | </item> |
| | 2224 | </papers> |
| | 2225 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2226 | </item> |
| | 2227 | <item> |
| | 2228 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2229 | xsi:type="n2:Array"> |
| | 2230 | <item> |
| | 2231 | <name xsi:type="xsd:string">Google</name> |
| | 2232 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&btnG=Google+Search</url> |
| | 2233 | </item> |
| | 2234 | <item> |
| | 2235 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2236 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&kgs=0&kls=1</url> |
| | 2237 | </item> |
| | 2238 | </pages> |
| | 2239 | <id xsi:type="xsd:int">8842</id> |
| | 2240 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2241 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 2242 | xsi:type="n2:Array"> |
| | 2243 | <item>Computational Biology</item> |
| | 2244 | <item>Genomics</item> |
| | 2245 | <item>Isochores</item> |
| | 2246 | <item>Software</item> |
| | 2247 | </mesh_term_list> |
| | 2248 | <title xsi:type="xsd:string">Isochores</title> |
| | 2249 | <rank xsi:type="xsd:int">38</rank> |
| | 2250 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2251 | xsi:type="n2:Array"> |
| | 2252 | <item href="#id29878940"></item> |
| | 2253 | </pmid_list> |
| | 2254 | <snippet xsi:type="xsd:string">IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm...to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each...http : //bioinfo2 . ugr . es/isochores/ ) , and also at the UCSC <strong>Genome</strong> Browser ( http : //<strong>genome</strong> . cse . ucsc . edu/ ) . http://bioinfo2.ugr.es/isochores/ text/html...</snippet> |
| | 2255 | <url xsi:type="xsd:string">http://bioinfo2.ugr.es/isochores/</url> |
| | 2256 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2257 | xsi:type="n2:Array"> |
| | 2258 | <item> |
| | 2259 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2260 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2261 | </item> |
| | 2262 | <item> |
| | 2263 | <name xsi:type="xsd:string">Scirus</name> |
| | 2264 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&ds=jnl&g=s&t=all</url> |
| | 2265 | </item> |
| | 2266 | <item> |
| | 2267 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2268 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2269 | </item> |
| | 2270 | <item> |
| | 2271 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2272 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbioinfo2.ugr.es%2Fisochores%2F&btnG=Search</url> |
| | 2273 | </item> |
| | 2274 | </papers> |
| | 2275 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2276 | </item> |
| | 2277 | <item> |
| | 2278 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2279 | xsi:type="n2:Array"> |
| | 2280 | <item> |
| | 2281 | <name xsi:type="xsd:string">Google</name> |
| | 2282 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&btnG=Google+Search</url> |
| | 2283 | </item> |
| | 2284 | <item> |
| | 2285 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2286 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&kgs=0&kls=1</url> |
| | 2287 | </item> |
| | 2288 | </pages> |
| | 2289 | <id xsi:type="xsd:int">9658</id> |
| | 2290 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2291 | <mesh_term_list n2:arrayType="xsd:string[12]" |
| | 2292 | xsi:type="n2:Array"> |
| | 2293 | <item>Cell Compartmentation</item> |
| | 2294 | <item>Computational Biology</item> |
| | 2295 | <item>DNA, Satellite</item> |
| | 2296 | <item>Databases, Genetic</item> |
| | 2297 | <item>Evolution, Molecular</item> |
| | 2298 | <item>Genome, Protozoan</item> |
| | 2299 | <item>HSP20 Heat-Shock Proteins</item> |
| | 2300 | <item>HSP30 Heat-Shock Proteins</item> |
| | 2301 | <item>Neospora</item> |
| | 2302 | <item>Plasmodium falciparum</item> |
| | 2303 | <item>Protozoan Proteins</item> |
| | 2304 | <item>Toxoplasma</item> |
| | 2305 | </mesh_term_list> |
| | 2306 | <title xsi:type="xsd:string">ToxoDB: The Toxoplasma gondii genome resource</title> |
| | 2307 | <rank xsi:type="xsd:int">39</rank> |
| | 2308 | <pmid_list n2:arrayType="xsd:string[4]" |
| | 2309 | xsi:type="n2:Array"> |
| | 2310 | <item>15170259</item> |
| | 2311 | <item>12519989</item> |
| | 2312 | <item>12519984</item> |
| | 2313 | <item>16339717</item> |
| | 2314 | </pmid_list> |
| | 2315 | <snippet xsi:type="xsd:string">...order structures corresponding to this satellite DNA family were found by searching the Toxoplasma <strong>genome</strong> database with these sequences . These studies were confirmed by sequence analysis and identified : (1...order structures were also found in the Toxoplasma-sister taxon Neospora caninum . The Toxoplasma <strong>genome</strong> database ( http : //ToxoDB.org ) permitted the assembly of a contig harboring Sat350 elements at...</snippet> |
| | 2316 | <url xsi:type="xsd:string">http://www.toxodb.org/toxo/home.jsp</url> |
| | 2317 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2318 | xsi:type="n2:Array"> |
| | 2319 | <item> |
| | 2320 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2321 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2322 | </item> |
| | 2323 | <item> |
| | 2324 | <name xsi:type="xsd:string">Scirus</name> |
| | 2325 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&ds=jnl&g=s&t=all</url> |
| | 2326 | </item> |
| | 2327 | <item> |
| | 2328 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2329 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2330 | </item> |
| | 2331 | <item> |
| | 2332 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2333 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.toxodb.org%2Ftoxo%2Fhome.jsp&btnG=Search</url> |
| | 2334 | </item> |
| | 2335 | </papers> |
| | 2336 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2337 | </item> |
| | 2338 | <item> |
| | 2339 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2340 | xsi:type="n2:Array"> |
| | 2341 | <item> |
| | 2342 | <name xsi:type="xsd:string">Google</name> |
| | 2343 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&btnG=Google+Search</url> |
| | 2344 | </item> |
| | 2345 | <item> |
| | 2346 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2347 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&kgs=0&kls=1</url> |
| | 2348 | </item> |
| | 2349 | </pages> |
| | 2350 | <id xsi:type="xsd:int">12273</id> |
| | 2351 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2352 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2353 | xsi:type="n2:Array"> |
| | 2354 | <item>Algorithms</item> |
| | 2355 | <item>Chromosome Mapping</item> |
| | 2356 | <item>Computer Graphics</item> |
| | 2357 | <item>Sequence Alignment</item> |
| | 2358 | <item>Sequence Analysis, DNA</item> |
| | 2359 | <item>Software</item> |
| | 2360 | <item>User-Computer Interface</item> |
| | 2361 | </mesh_term_list> |
| | 2362 | <title xsi:type="xsd:string">COMPAM : Visualizaion TOOL of Combining Pairwise Alignment for Multiple Genomes</title> |
| | 2363 | <rank xsi:type="xsd:int">40</rank> |
| | 2364 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2365 | xsi:type="n2:Array"> |
| | 2366 | <item>16269416</item> |
| | 2367 | </pmid_list> |
| | 2368 | <snippet xsi:type="xsd:string">COMPAM : visualization of combining pairwise alignments for multiple <strong>genomes</strong> . COMPAM is a tool for visualizing relationships among multiple whole <strong>genomes</strong> by combining all pairwise <strong>genome</strong> alignments . It displays shared conserved regions ( blocks ) and where these blocks occur ( edges ) as block relation graphs which can be explored interactively . An unannotated <strong>genome</strong> , e.g. can then be explored using information from...</snippet> |
| | 2369 | <url xsi:type="xsd:string">http://bio.informatics.indiana.edu/projects/compam/</url> |
| | 2370 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2371 | xsi:type="n2:Array"> |
| | 2372 | <item> |
| | 2373 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2374 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2375 | </item> |
| | 2376 | <item> |
| | 2377 | <name xsi:type="xsd:string">Scirus</name> |
| | 2378 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&ds=jnl&g=s&t=all</url> |
| | 2379 | </item> |
| | 2380 | <item> |
| | 2381 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2382 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2383 | </item> |
| | 2384 | <item> |
| | 2385 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2386 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbio.informatics.indiana.edu%2Fprojects%2Fcompam%2F&btnG=Search</url> |
| | 2387 | </item> |
| | 2388 | </papers> |
| | 2389 | <average_stars xsi:type="xsd:double">+0</average_stars> |
| | 2390 | </item> |
| | 2391 | <item> |
| | 2392 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2393 | xsi:type="n2:Array"> |
| | 2394 | <item> |
| | 2395 | <name xsi:type="xsd:string">Google</name> |
| | 2396 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&btnG=Google+Search</url> |
| | 2397 | </item> |
| | 2398 | <item> |
| | 2399 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2400 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&kgs=0&kls=1</url> |
| | 2401 | </item> |
| | 2402 | </pages> |
| | 2403 | <id xsi:type="xsd:int">5353</id> |
| | 2404 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2405 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 2406 | xsi:type="n2:Array"> |
| | 2407 | <item>Algorithms</item> |
| | 2408 | <item>Chromosome Mapping</item> |
| | 2409 | <item>Computer Graphics</item> |
| | 2410 | <item>Genome</item> |
| | 2411 | <item>Sequence Alignment</item> |
| | 2412 | <item>Sequence Analysis, DNA</item> |
| | 2413 | <item>Software</item> |
| | 2414 | <item>User-Computer Interface</item> |
| | 2415 | </mesh_term_list> |
| | 2416 | <title xsi:type="xsd:string">SynView :: User Guide</title> |
| | 2417 | <rank xsi:type="xsd:int">41</rank> |
| | 2418 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2419 | xsi:type="n2:Array"> |
| | 2420 | <item>16844709</item> |
| | 2421 | </pmid_list> |
| | 2422 | <snippet xsi:type="xsd:string">SynView : a GBrowse-compatible approach to visualizing comparative <strong>genome</strong> data . SUMMARY : We present SynView , a simple and generic...and generic approach to dynamically visualize multi-species comparative <strong>genome</strong> data . It is a light-weight application based on...Comparative Sequence Analysis Sybil: Web-based Software for Comparative <strong>Genomics</strong> Questions may be emailed to help@ApiDB.org Y Su H Wang JC Kissinger ET Kraemer AJ Mackey <strong>Genome</strong> Computer Graphics Sequence Alignment Algorithms Chromosome Mapping Software Species Specificity Sequence Analysis, DNA User-Computer Interface <strong>Genome</strong> Computer Graphics Sequence Alignment Algorithms Chromosome Mapping Software Sequence Analysis, ... User-Computer Interface Science Computing Methodologies Data Display Software...</snippet> |
| | 2423 | <url xsi:type="xsd:string">http://www.apidb.org/apps/SynView/</url> |
| | 2424 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2425 | xsi:type="n2:Array"> |
| | 2426 | <item> |
| | 2427 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2428 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2429 | </item> |
| | 2430 | <item> |
| | 2431 | <name xsi:type="xsd:string">Scirus</name> |
| | 2432 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&ds=jnl&g=s&t=all</url> |
| | 2433 | </item> |
| | 2434 | <item> |
| | 2435 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2436 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2437 | </item> |
| | 2438 | <item> |
| | 2439 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2440 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.apidb.org%2Fapps%2FSynView%2F&btnG=Search</url> |
| | 2441 | </item> |
| | 2442 | </papers> |
| | 2443 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2444 | </item> |
| | 2445 | <item> |
| | 2446 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2447 | xsi:type="n2:Array"> |
| | 2448 | <item> |
| | 2449 | <name xsi:type="xsd:string">Google</name> |
| | 2450 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&btnG=Google+Search</url> |
| | 2451 | </item> |
| | 2452 | <item> |
| | 2453 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2454 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&kgs=0&kls=1</url> |
| | 2455 | </item> |
| | 2456 | </pages> |
| | 2457 | <id xsi:type="xsd:int">7859</id> |
| | 2458 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2459 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 2460 | xsi:type="n2:Array"> |
| | 2461 | <item>Algorithms</item> |
| | 2462 | <item>Contig Mapping</item> |
| | 2463 | <item>Gene Expression Profiling</item> |
| | 2464 | <item>Sequence Alignment</item> |
| | 2465 | <item>Sequence Analysis, DNA</item> |
| | 2466 | </mesh_term_list> |
| | 2467 | <title xsi:type="xsd:string">Bioinformatics Lab at UCSD (Professor Pevzner's Group) - Software</title> |
| | 2468 | <rank xsi:type="xsd:int">42</rank> |
| | 2469 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2470 | xsi:type="n2:Array"> |
| | 2471 | <item>15059830</item> |
| | 2472 | </pmid_list> |
| | 2473 | <snippet xsi:type="xsd:string">...reads assembler MS/MS spectra assembly Spectral Networks PepNovo PepNovoDB Uniform Projection Motif Finder Comparative <strong>genomics</strong> motif finding Alu Repeat Subfamily Classification RepeatScout ABA EULER-AIRSubgroupsPress CoveragePublicationsInternal: Group members only Software and Web ToolsEULER - <strong>Genome</strong> AssemblerGRIMM - Pairwise <strong>Genome</strong> Rearrangement AnalysisMGR - Multiple <strong>Genome</strong> Rearrangement AnalysisInvChecker: Micro-inversion FinderMULTIPROFILER - subtle motif finder (download) Splicing graphs - a new EST assembly...</snippet> |
| | 2474 | <url xsi:type="xsd:string">http://www.cse.ucsd.edu/groups/bioinformatics/software.html</url> |
| | 2475 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2476 | xsi:type="n2:Array"> |
| | 2477 | <item> |
| | 2478 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2479 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2480 | </item> |
| | 2481 | <item> |
| | 2482 | <name xsi:type="xsd:string">Scirus</name> |
| | 2483 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&ds=jnl&g=s&t=all</url> |
| | 2484 | </item> |
| | 2485 | <item> |
| | 2486 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2487 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2488 | </item> |
| | 2489 | <item> |
| | 2490 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2491 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.cse.ucsd.edu%2Fgroups%2Fbioinformatics%2Fsoftware.html&btnG=Search</url> |
| | 2492 | </item> |
| | 2493 | </papers> |
| | 2494 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2495 | </item> |
| | 2496 | <item> |
| | 2497 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2498 | xsi:type="n2:Array"> |
| | 2499 | <item> |
| | 2500 | <name xsi:type="xsd:string">Google</name> |
| | 2501 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&btnG=Google+Search</url> |
| | 2502 | </item> |
| | 2503 | <item> |
| | 2504 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2505 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&kgs=0&kls=1</url> |
| | 2506 | </item> |
| | 2507 | </pages> |
| | 2508 | <id xsi:type="xsd:int">11490</id> |
| | 2509 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2510 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2511 | xsi:type="n2:Array"> |
| | 2512 | <item>Algorithms</item> |
| | 2513 | <item>Chromosome Mapping</item> |
| | 2514 | <item>DNA, Viral</item> |
| | 2515 | <item>Genome, Viral</item> |
| | 2516 | <item>Sequence Alignment</item> |
| | 2517 | <item>Sequence Analysis, DNA</item> |
| | 2518 | <item>Viral Proteins</item> |
| | 2519 | </mesh_term_list> |
| | 2520 | <title xsi:type="xsd:string">"Correlation of Amino Acid preference and Mammalian Viral Genome Type"</title> |
| | 2521 | <rank xsi:type="xsd:int">43</rank> |
| | 2522 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2523 | xsi:type="n2:Array"> |
| | 2524 | <item>15572467</item> |
| | 2525 | </pmid_list> |
| | 2526 | <snippet xsi:type="xsd:string">Correlation of amino acid preference and mammalian viral <strong>genome</strong> type . MOTIVATION : In the event of an outbreak of a disease caused by an initially...pathogen will be helpful . We show that it is possible to classify viral sequences by <strong>genome</strong> type ( dsDNA , ssDNA , ssRNA positive strand , ssRNA negative strand , retroid ) using amino acid distribution . RESULTS...</snippet> |
| | 2527 | <url xsi:type="xsd:string">http://www.cse.sc.edu/~rose/aminoPreference/index.html</url> |
| | 2528 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2529 | xsi:type="n2:Array"> |
| | 2530 | <item> |
| | 2531 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2532 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2533 | </item> |
| | 2534 | <item> |
| | 2535 | <name xsi:type="xsd:string">Scirus</name> |
| | 2536 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&ds=jnl&g=s&t=all</url> |
| | 2537 | </item> |
| | 2538 | <item> |
| | 2539 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2540 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2541 | </item> |
| | 2542 | <item> |
| | 2543 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2544 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.cse.sc.edu%2F%7Erose%2FaminoPreference%2Findex.html&btnG=Search</url> |
| | 2545 | </item> |
| | 2546 | </papers> |
| | 2547 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2548 | </item> |
| | 2549 | <item> |
| | 2550 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2551 | xsi:type="n2:Array"> |
| | 2552 | <item> |
| | 2553 | <name xsi:type="xsd:string">Google</name> |
| | 2554 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fcinteny.cchmc.org%2F&btnG=Google+Search</url> |
| | 2555 | </item> |
| | 2556 | <item> |
| | 2557 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2558 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fcinteny.cchmc.org%2F&kgs=0&kls=1</url> |
| | 2559 | </item> |
| | 2560 | </pages> |
| | 2561 | <id xsi:type="xsd:int">2915</id> |
| | 2562 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2563 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 2564 | xsi:type="n2:Array"> |
| | 2565 | <item>Chromosome Mapping</item> |
| | 2566 | <item>Evolution, Molecular</item> |
| | 2567 | <item>Sequence Analysis, DNA</item> |
| | 2568 | <item>Software</item> |
| | 2569 | <item>Synteny</item> |
| | 2570 | </mesh_term_list> |
| | 2571 | <title xsi:type="xsd:string">Cinteny - Server for Synteny and Genome Rearrangement Analysis</title> |
| | 2572 | <rank xsi:type="xsd:int">44</rank> |
| | 2573 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2574 | xsi:type="n2:Array"> |
| | 2575 | <item>17343765</item> |
| | 2576 | </pmid_list> |
| | 2577 | <snippet xsi:type="xsd:string">Cinteny : flexible analysis and visualization of synteny and <strong>genome</strong> rearrangements in multiple organisms . BACKGROUND : Identifying syntenic regions , i.e. , blocks of genes or other markers with evolutionary conserved order , and quantifying evolutionary relatedness between <strong>genomes</strong> in terms of chromosomal rearrangements is one of the central goals in comparative <strong>genomics</strong> . However , the analysis of synteny and the resulting assessment...</snippet> |
| | 2578 | <url xsi:type="xsd:string">http://cinteny.cchmc.org/</url> |
| | 2579 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2580 | xsi:type="n2:Array"> |
| | 2581 | <item> |
| | 2582 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2583 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fcinteny.cchmc.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2584 | </item> |
| | 2585 | <item> |
| | 2586 | <name xsi:type="xsd:string">Scirus</name> |
| | 2587 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fcinteny.cchmc.org%2F&ds=jnl&g=s&t=all</url> |
| | 2588 | </item> |
| | 2589 | <item> |
| | 2590 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2591 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fcinteny.cchmc.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2592 | </item> |
| | 2593 | <item> |
| | 2594 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2595 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fcinteny.cchmc.org%2F&btnG=Search</url> |
| | 2596 | </item> |
| | 2597 | </papers> |
| | 2598 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2599 | </item> |
| | 2600 | <item> |
| | 2601 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2602 | xsi:type="n2:Array"> |
| | 2603 | <item> |
| | 2604 | <name xsi:type="xsd:string">Google</name> |
| | 2605 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&btnG=Google+Search</url> |
| | 2606 | </item> |
| | 2607 | <item> |
| | 2608 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2609 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&kgs=0&kls=1</url> |
| | 2610 | </item> |
| | 2611 | </pages> |
| | 2612 | <id xsi:type="xsd:int">2849</id> |
| | 2613 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2614 | <mesh_term_list n2:arrayType="xsd:string[3]" |
| | 2615 | xsi:type="n2:Array"> |
| | 2616 | <item>Genomics</item> |
| | 2617 | <item>Sequence Analysis, DNA</item> |
| | 2618 | <item>Software</item> |
| | 2619 | </mesh_term_list> |
| | 2620 | <title xsi:type="xsd:string">DNannotator</title> |
| | 2621 | <rank xsi:type="xsd:int">45</rank> |
| | 2622 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2623 | xsi:type="n2:Array"> |
| | 2624 | <item>12824405</item> |
| | 2625 | </pmid_list> |
| | 2626 | <snippet xsi:type="xsd:string">DNannotator : Annotation software tool kit for regional <strong>genomic</strong> sequences . Sequence annotation is essential for <strong>genomics</strong>-based research . Investigators of a specific <strong>genomic</strong> region who have developed abundant local discoveries such as...was designed to perform batch annotation on a sizeable <strong>genomic</strong> region . It takes annotation source data , such as SNPs...</snippet> |
| | 2627 | <url xsi:type="xsd:string">http://sky.bsd.uchicago.edu/DNannotator.htm</url> |
| | 2628 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2629 | xsi:type="n2:Array"> |
| | 2630 | <item> |
| | 2631 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2632 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2633 | </item> |
| | 2634 | <item> |
| | 2635 | <name xsi:type="xsd:string">Scirus</name> |
| | 2636 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&ds=jnl&g=s&t=all</url> |
| | 2637 | </item> |
| | 2638 | <item> |
| | 2639 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2640 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2641 | </item> |
| | 2642 | <item> |
| | 2643 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2644 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fsky.bsd.uchicago.edu%2FDNannotator.htm&btnG=Search</url> |
| | 2645 | </item> |
| | 2646 | </papers> |
| | 2647 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2648 | </item> |
| | 2649 | <item> |
| | 2650 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2651 | xsi:type="n2:Array"> |
| | 2652 | <item> |
| | 2653 | <name xsi:type="xsd:string">Google</name> |
| | 2654 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&btnG=Google+Search</url> |
| | 2655 | </item> |
| | 2656 | <item> |
| | 2657 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2658 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&kgs=0&kls=1</url> |
| | 2659 | </item> |
| | 2660 | </pages> |
| | 2661 | <id xsi:type="xsd:int">3351</id> |
| | 2662 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2663 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 2664 | xsi:type="n2:Array"> |
| | 2665 | <item>Algorithms</item> |
| | 2666 | <item>Chromosome Mapping</item> |
| | 2667 | <item>Computer-Aided Design</item> |
| | 2668 | <item>DNA Probes</item> |
| | 2669 | <item>Microarray Analysis</item> |
| | 2670 | <item>Sequence Analysis, DNA</item> |
| | 2671 | </mesh_term_list> |
| | 2672 | <title xsi:type="xsd:string">Optimized Design and Assessment of Whole Genome Tiling Arrays</title> |
| | 2673 | <rank xsi:type="xsd:int">46</rank> |
| | 2674 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2675 | xsi:type="n2:Array"> |
| | 2676 | <item>17646297</item> |
| | 2677 | </pmid_list> |
| | 2678 | <snippet xsi:type="xsd:string">Optimized design and assessment of whole <strong>genome</strong> tiling arrays. MOTIVATION: Recent advances in microarray technologies have made it feasible to interrogate whole <strong>genomes</strong> with tiling arrays and this technique is rapidly becoming one of the most important high-throughput functional <strong>genomics</strong> assays. For large mammalian <strong>genomes</strong>, analyzing oligonucleotide tiling array data is complicated by the presence...</snippet> |
| | 2679 | <url xsi:type="xsd:string">http://www.ebi.ac.uk/~graef/arraydesign/</url> |
| | 2680 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2681 | xsi:type="n2:Array"> |
| | 2682 | <item> |
| | 2683 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2684 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2685 | </item> |
| | 2686 | <item> |
| | 2687 | <name xsi:type="xsd:string">Scirus</name> |
| | 2688 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&ds=jnl&g=s&t=all</url> |
| | 2689 | </item> |
| | 2690 | <item> |
| | 2691 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2692 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2693 | </item> |
| | 2694 | <item> |
| | 2695 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2696 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ebi.ac.uk%2F%7Egraef%2Farraydesign%2F&btnG=Search</url> |
| | 2697 | </item> |
| | 2698 | </papers> |
| | 2699 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2700 | </item> |
| | 2701 | <item> |
| | 2702 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2703 | xsi:type="n2:Array"> |
| | 2704 | <item> |
| | 2705 | <name xsi:type="xsd:string">Google</name> |
| | 2706 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.gov%2FGrants%2F&btnG=Google+Search</url> |
| | 2707 | </item> |
| | 2708 | <item> |
| | 2709 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2710 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.gov%2FGrants%2F&kgs=0&kls=1</url> |
| | 2711 | </item> |
| | 2712 | </pages> |
| | 2713 | <id xsi:type="xsd:int">6726</id> |
| | 2714 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2715 | <mesh_term_list n2:arrayType="xsd:string[2]" |
| | 2716 | xsi:type="n2:Array"> |
| | 2717 | <item>Research Design</item> |
| | 2718 | <item>Sequence Analysis, DNA</item> |
| | 2719 | </mesh_term_list> |
| | 2720 | <title xsi:type="xsd:string">genome.gov | Grants</title> |
| | 2721 | <rank xsi:type="xsd:int">47</rank> |
| | 2722 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2723 | xsi:type="n2:Array"> |
| | 2724 | <item>14631655</item> |
| | 2725 | </pmid_list> |
| | 2726 | <snippet xsi:type="xsd:string">...of paramount importance in the world of modern genetic and <strong>genomics</strong> . Both the sequencing of Human <strong>Genome</strong> in the " post-draft " era [ NHGRI Standard for quality of Human <strong>Genomic</strong> Sequences , Rev . 7 July ( 2002 ) where http : //www . nhgri . nih...http : //bio . ifom-firc . it/Phred20/index . html . http://www.<strong>genome</strong>.gov/Grants/ text/html <strong>genome</strong>.gov | Grants ...</snippet> |
| | 2727 | <url xsi:type="xsd:string">http://www.genome.gov/Grants/</url> |
| | 2728 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2729 | xsi:type="n2:Array"> |
| | 2730 | <item> |
| | 2731 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2732 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.gov%2FGrants%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2733 | </item> |
| | 2734 | <item> |
| | 2735 | <name xsi:type="xsd:string">Scirus</name> |
| | 2736 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.gov%2FGrants%2F&ds=jnl&g=s&t=all</url> |
| | 2737 | </item> |
| | 2738 | <item> |
| | 2739 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2740 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.gov%2FGrants%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2741 | </item> |
| | 2742 | <item> |
| | 2743 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2744 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genome.gov%2FGrants%2F&btnG=Search</url> |
| | 2745 | </item> |
| | 2746 | </papers> |
| | 2747 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2748 | </item> |
| | 2749 | <item> |
| | 2750 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2751 | xsi:type="n2:Array"> |
| | 2752 | <item> |
| | 2753 | <name xsi:type="xsd:string">Google</name> |
| | 2754 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&btnG=Google+Search</url> |
| | 2755 | </item> |
| | 2756 | <item> |
| | 2757 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2758 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&kgs=0&kls=1</url> |
| | 2759 | </item> |
| | 2760 | </pages> |
| | 2761 | <id xsi:type="xsd:int">4178</id> |
| | 2762 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2763 | <mesh_term_list n2:arrayType="xsd:string[11]" |
| | 2764 | xsi:type="n2:Array"> |
| | 2765 | <item>Algorithms</item> |
| | 2766 | <item>Brassica</item> |
| | 2767 | <item>Chromosome Mapping</item> |
| | 2768 | <item>DNA Primers</item> |
| | 2769 | <item>Databases, Genetic</item> |
| | 2770 | <item>Genome, Plant</item> |
| | 2771 | <item>Genomics</item> |
| | 2772 | <item>Microsatellite Repeats</item> |
| | 2773 | <item>Polymerase Chain Reaction</item> |
| | 2774 | <item>Sequence Analysis, DNA</item> |
| | 2775 | <item>Software</item> |
| | 2776 | </mesh_term_list> |
| | 2777 | <title xsi:type="xsd:string">Plant Genetics and Genomics Bioinformatics</title> |
| | 2778 | <rank xsi:type="xsd:int">48</rank> |
| | 2779 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 2780 | xsi:type="n2:Array"> |
| | 2781 | <item>15608282</item> |
| | 2782 | <item>14962913</item> |
| | 2783 | </pmid_list> |
| | 2784 | <snippet xsi:type="xsd:string">Brassica ASTRA : an integrated database for Brassica <strong>genomic</strong> research . Brassica ASTRA is a public database for genomic information...Brassica genomic research . Brassica ASTRA is a public database for <strong>genomic</strong> information on Brassica species . The database incorporates expressed sequences with...within resident sequences and mapped onto the closely related Arabidopsis <strong>genome</strong> sequence . Bacterial artificial chromosome ( BAC ) end sequences derived from the...</snippet> |
| | 2785 | <url xsi:type="xsd:string">http://hornbill.cspp.latrobe.edu.au/</url> |
| | 2786 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2787 | xsi:type="n2:Array"> |
| | 2788 | <item> |
| | 2789 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2790 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2791 | </item> |
| | 2792 | <item> |
| | 2793 | <name xsi:type="xsd:string">Scirus</name> |
| | 2794 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&ds=jnl&g=s&t=all</url> |
| | 2795 | </item> |
| | 2796 | <item> |
| | 2797 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2798 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2799 | </item> |
| | 2800 | <item> |
| | 2801 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2802 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fhornbill.cspp.latrobe.edu.au%2F&btnG=Search</url> |
| | 2803 | </item> |
| | 2804 | </papers> |
| | 2805 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2806 | </item> |
| | 2807 | <item> |
| | 2808 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2809 | xsi:type="n2:Array"> |
| | 2810 | <item> |
| | 2811 | <name xsi:type="xsd:string">Google</name> |
| | 2812 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&btnG=Google+Search</url> |
| | 2813 | </item> |
| | 2814 | <item> |
| | 2815 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2816 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&kgs=0&kls=1</url> |
| | 2817 | </item> |
| | 2818 | </pages> |
| | 2819 | <id xsi:type="xsd:int">1651</id> |
| | 2820 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2821 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 2822 | xsi:type="n2:Array"> |
| | 2823 | <item>Genome</item> |
| | 2824 | <item>Genomics</item> |
| | 2825 | <item>Sequence Alignment</item> |
| | 2826 | <item>Sequence Analysis, DNA</item> |
| | 2827 | <item>Software</item> |
| | 2828 | </mesh_term_list> |
| | 2829 | <title xsi:type="xsd:string">CHAOS + DIALIGN: job submission</title> |
| | 2830 | <rank xsi:type="xsd:int">49</rank> |
| | 2831 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 2832 | xsi:type="n2:Array"> |
| | 2833 | <item>14693042</item> |
| | 2834 | <item>15980528</item> |
| | 2835 | <item>15215346</item> |
| | 2836 | </pmid_list> |
| | 2837 | <snippet xsi:type="xsd:string">Multiple alignment of <strong>genomic</strong> sequences using CHAOS , DIALIGN and ABC . Comparative analysis of genomic...genomic sequences using CHAOS , DIALIGN and ABC . Comparative analysis of <strong>genomic</strong> sequences is a powerful approach to discover functional sites in...present a WWW-based software system for multiple alignment of <strong>genomic</strong> sequences . We use the local alignment tool CHAOS to rapidly...</snippet> |
| | 2838 | <url xsi:type="xsd:string">http://dialign.gobics.de/chaos-dialign-submission</url> |
| | 2839 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2840 | xsi:type="n2:Array"> |
| | 2841 | <item> |
| | 2842 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2843 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2844 | </item> |
| | 2845 | <item> |
| | 2846 | <name xsi:type="xsd:string">Scirus</name> |
| | 2847 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&ds=jnl&g=s&t=all</url> |
| | 2848 | </item> |
| | 2849 | <item> |
| | 2850 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2851 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2852 | </item> |
| | 2853 | <item> |
| | 2854 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2855 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fdialign.gobics.de%2Fchaos-dialign-submission&btnG=Search</url> |
| | 2856 | </item> |
| | 2857 | </papers> |
| | 2858 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2859 | </item> |
| | 2860 | <item> |
| | 2861 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2862 | xsi:type="n2:Array"> |
| | 2863 | <item> |
| | 2864 | <name xsi:type="xsd:string">Google</name> |
| | 2865 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&btnG=Google+Search</url> |
| | 2866 | </item> |
| | 2867 | <item> |
| | 2868 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2869 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&kgs=0&kls=1</url> |
| | 2870 | </item> |
| | 2871 | </pages> |
| | 2872 | <id xsi:type="xsd:int">1118</id> |
| | 2873 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2874 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 2875 | xsi:type="n2:Array"> |
| | 2876 | <item>Binding Sites</item> |
| | 2877 | <item>Chromosome Mapping</item> |
| | 2878 | <item>Promoter Regions (Genetics)</item> |
| | 2879 | <item>Sequence Alignment</item> |
| | 2880 | <item>Sequence Analysis, DNA</item> |
| | 2881 | <item>Trans-Activation (Genetics)</item> |
| | 2882 | <item>Transcription Factors</item> |
| | 2883 | </mesh_term_list> |
| | 2884 | <title xsi:type="xsd:string">Ancha Baranova Lab.</title> |
| | 2885 | <rank xsi:type="xsd:int">50</rank> |
| | 2886 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 2887 | xsi:type="n2:Array"> |
| | 2888 | <item>15699025</item> |
| | 2889 | </pmid_list> |
| | 2890 | <snippet xsi:type="xsd:string">...occurrence of transcription factor binding sites in vertebrate <strong>genomes</strong> and gene promoter areas . MOTIVATION : The detection of transcription factor binding sites ( TFBS ) in <strong>genomic</strong> sequences is a basic task for elucidating the...and the dinucleotide statistics of the completed vertebrate <strong>genomes</strong> , then performed a TFBS prediction in the corresponding...performed a TFBS prediction in the corresponding complete <strong>genomic</strong> sequences and their repeat-free , repetitive and regulatory...</snippet> |
| | 2891 | <url xsi:type="xsd:string">http://www.gmu.edu/departments/mmb/baranova/pages/bioinformatics</url> |
| | 2892 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2893 | xsi:type="n2:Array"> |
| | 2894 | <item> |
| | 2895 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2896 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2897 | </item> |
| | 2898 | <item> |
| | 2899 | <name xsi:type="xsd:string">Scirus</name> |
| | 2900 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&ds=jnl&g=s&t=all</url> |
| | 2901 | </item> |
| | 2902 | <item> |
| | 2903 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2904 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2905 | </item> |
| | 2906 | <item> |
| | 2907 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2908 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.gmu.edu%2Fdepartments%2Fmmb%2Fbaranova%2Fpages%2Fbioinformatics&btnG=Search</url> |
| | 2909 | </item> |
| | 2910 | </papers> |
| | 2911 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2912 | </item> |
| | 2913 | <item> |
| | 2914 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2915 | xsi:type="n2:Array"> |
| | 2916 | <item> |
| | 2917 | <name xsi:type="xsd:string">Google</name> |
| | 2918 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&btnG=Google+Search</url> |
| | 2919 | </item> |
| | 2920 | <item> |
| | 2921 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2922 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&kgs=0&kls=1</url> |
| | 2923 | </item> |
| | 2924 | </pages> |
| | 2925 | <id xsi:type="xsd:int">116</id> |
| | 2926 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2927 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 2928 | xsi:type="n2:Array"> |
| | 2929 | <item>Chromosome Mapping</item> |
| | 2930 | <item>Chromosomes, Plant</item> |
| | 2931 | <item>Genes, Plant</item> |
| | 2932 | <item>Genome, Plant</item> |
| | 2933 | <item>Linkage (Genetics)</item> |
| | 2934 | <item>Lotus</item> |
| | 2935 | <item>Plant Proteins</item> |
| | 2936 | <item>Sequence Analysis, DNA</item> |
| | 2937 | </mesh_term_list> |
| | 2938 | <title xsi:type="xsd:string">Lotus japonicus: Entrance</title> |
| | 2939 | <rank xsi:type="xsd:int">51</rank> |
| | 2940 | <pmid_list n2:arrayType="xsd:string[6]" |
| | 2941 | xsi:type="n2:Array"> |
| | 2942 | <item>11853317</item> |
| | 2943 | <item>12886953</item> |
| | 2944 | <item>11853318</item> |
| | 2945 | <item>12056416</item> |
| | 2946 | <item>15029958</item> |
| | 2947 | <item>12693552</item> |
| | 2948 | </pmid_list> |
| | 2949 | <snippet xsi:type="xsd:string">Structural analysis of a Lotus japonicus <strong>genome</strong> . V . Sequence features and mapping of sixty-four TAC clones which cover the...sixty-four TAC clones which cover the 6.4 mb regions of the <strong>genome</strong> . We determined the nucleotide sequences of 64 TAC ( transformation-competent artificial chromosome ) clones...the nucleotide sequences of 64 TAC ( transformation-competent artificial chromosome ) clones selected from <strong>genomic</strong> libraries of Lotus japonicus accession Miyakojima MG-20 based on the sequence information...</snippet> |
| | 2950 | <url xsi:type="xsd:string">http://www.kazusa.or.jp/lotus/</url> |
| | 2951 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 2952 | xsi:type="n2:Array"> |
| | 2953 | <item> |
| | 2954 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 2955 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 2956 | </item> |
| | 2957 | <item> |
| | 2958 | <name xsi:type="xsd:string">Scirus</name> |
| | 2959 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&ds=jnl&g=s&t=all</url> |
| | 2960 | </item> |
| | 2961 | <item> |
| | 2962 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 2963 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 2964 | </item> |
| | 2965 | <item> |
| | 2966 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 2967 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.kazusa.or.jp%2Flotus%2F&btnG=Search</url> |
| | 2968 | </item> |
| | 2969 | </papers> |
| | 2970 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 2971 | </item> |
| | 2972 | <item> |
| | 2973 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 2974 | xsi:type="n2:Array"> |
| | 2975 | <item> |
| | 2976 | <name xsi:type="xsd:string">Google</name> |
| | 2977 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&btnG=Google+Search</url> |
| | 2978 | </item> |
| | 2979 | <item> |
| | 2980 | <name xsi:type="xsd:string">AltaVista</name> |
| | 2981 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&kgs=0&kls=1</url> |
| | 2982 | </item> |
| | 2983 | </pages> |
| | 2984 | <id xsi:type="xsd:int">537</id> |
| | 2985 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 2986 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 2987 | xsi:type="n2:Array"> |
| | 2988 | <item>Algorithms</item> |
| | 2989 | <item>Chromosome Mapping</item> |
| | 2990 | <item>Expressed Sequence Tags</item> |
| | 2991 | <item>RNA, Messenger</item> |
| | 2992 | <item>Sequence Alignment</item> |
| | 2993 | <item>Sequence Analysis, DNA</item> |
| | 2994 | <item>Sequence Analysis, RNA</item> |
| | 2995 | <item>Software</item> |
| | 2996 | </mesh_term_list> |
| | 2997 | <title xsi:type="xsd:string">GMAP</title> |
| | 2998 | <rank xsi:type="xsd:int">52</rank> |
| | 2999 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3000 | xsi:type="n2:Array"> |
| | 3001 | <item>15728110</item> |
| | 3002 | </pmid_list> |
| | 3003 | <snippet xsi:type="xsd:string">GMAP : a <strong>genomic</strong> mapping and alignment program for mRNA and EST sequences...program for mapping and aligning cDNA sequences to a <strong>genome</strong> . The program maps and aligns a single sequence with...underlying the program includes a minimal sampling strategy for <strong>genomic</strong> mapping , oligomer chaining for approximate alignment , sandwich DP for...</snippet> |
| | 3004 | <url xsi:type="xsd:string">http://www.gene.com/share/gmap/</url> |
| | 3005 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3006 | xsi:type="n2:Array"> |
| | 3007 | <item> |
| | 3008 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3009 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3010 | </item> |
| | 3011 | <item> |
| | 3012 | <name xsi:type="xsd:string">Scirus</name> |
| | 3013 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&ds=jnl&g=s&t=all</url> |
| | 3014 | </item> |
| | 3015 | <item> |
| | 3016 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3017 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3018 | </item> |
| | 3019 | <item> |
| | 3020 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3021 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.gene.com%2Fshare%2Fgmap%2F&btnG=Search</url> |
| | 3022 | </item> |
| | 3023 | </papers> |
| | 3024 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3025 | </item> |
| | 3026 | <item> |
| | 3027 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3028 | xsi:type="n2:Array"> |
| | 3029 | <item> |
| | 3030 | <name xsi:type="xsd:string">Google</name> |
| | 3031 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&btnG=Google+Search</url> |
| | 3032 | </item> |
| | 3033 | <item> |
| | 3034 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3035 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&kgs=0&kls=1</url> |
| | 3036 | </item> |
| | 3037 | </pages> |
| | 3038 | <id xsi:type="xsd:int">1335</id> |
| | 3039 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3040 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3041 | xsi:type="n2:Array"> |
| | 3042 | <item>Archaea</item> |
| | 3043 | <item>Bacterial Proteins</item> |
| | 3044 | <item>DNA-Binding Proteins</item> |
| | 3045 | <item>Genes, Archaeal</item> |
| | 3046 | <item>Repressor Proteins</item> |
| | 3047 | <item>Trans-Activators</item> |
| | 3048 | </mesh_term_list> |
| | 3049 | <title xsi:type="xsd:string">PIGED - Prokaryotic InterGenic Exploration Database</title> |
| | 3050 | <rank xsi:type="xsd:int">53</rank> |
| | 3051 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3052 | xsi:type="n2:Array"> |
| | 3053 | <item>16877320</item> |
| | 3054 | </pmid_list> |
| | 3055 | <snippet xsi:type="xsd:string">...in archaea using the Prokaryotic InterGenic Exploration Database ( PIGED ) . Microbial <strong>genome</strong> sequencing projects have revealed an apparently wide distribution of SmtB/ArsR metal-responsive transcriptional regulators among prokaryotes . Using a position-dependent weight matrix approach , prokaryotic <strong>genome</strong> sequences were screened for SmtB/ArsR DNA binding sites using...archaeal species , are predicted among 230 annotated and draft prokaryotic <strong>genome</strong> sequences . Independent multiple sequence alignments of putative operator sites and...</snippet> |
| | 3056 | <url xsi:type="xsd:string">http://bioinformatics.uwp.edu/~PIGED/home.htm</url> |
| | 3057 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3058 | xsi:type="n2:Array"> |
| | 3059 | <item> |
| | 3060 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3061 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3062 | </item> |
| | 3063 | <item> |
| | 3064 | <name xsi:type="xsd:string">Scirus</name> |
| | 3065 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&ds=jnl&g=s&t=all</url> |
| | 3066 | </item> |
| | 3067 | <item> |
| | 3068 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3069 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3070 | </item> |
| | 3071 | <item> |
| | 3072 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3073 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbioinformatics.uwp.edu%2F%7EPIGED%2Fhome.htm&btnG=Search</url> |
| | 3074 | </item> |
| | 3075 | </papers> |
| | 3076 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3077 | </item> |
| | 3078 | <item> |
| | 3079 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3080 | xsi:type="n2:Array"> |
| | 3081 | <item> |
| | 3082 | <name xsi:type="xsd:string">Google</name> |
| | 3083 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fminisatellites.u-psud.fr%2F&btnG=Google+Search</url> |
| | 3084 | </item> |
| | 3085 | <item> |
| | 3086 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3087 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fminisatellites.u-psud.fr%2F&kgs=0&kls=1</url> |
| | 3088 | </item> |
| | 3089 | </pages> |
| | 3090 | <id xsi:type="xsd:int">10552</id> |
| | 3091 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3092 | <mesh_term_list n2:arrayType="xsd:string[10]" |
| | 3093 | xsi:type="n2:Array"> |
| | 3094 | <item>Bacillus anthracis</item> |
| | 3095 | <item>Bacteria</item> |
| | 3096 | <item>Databases, Genetic</item> |
| | 3097 | <item>Genome, Bacterial</item> |
| | 3098 | <item>Genome, Viral</item> |
| | 3099 | <item>Internet</item> |
| | 3100 | <item>Orthopoxvirus</item> |
| | 3101 | <item>Polymorphism, Genetic</item> |
| | 3102 | <item>Tandem Repeat Sequences</item> |
| | 3103 | <item>Yersinia pestis</item> |
| | 3104 | </mesh_term_list> |
| | 3105 | <title xsi:type="xsd:string">MLVA - Multiple Loci VNTR Analysis databases and software</title> |
| | 3106 | <rank xsi:type="xsd:int">54</rank> |
| | 3107 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 3108 | xsi:type="n2:Array"> |
| | 3109 | <item>14715089</item> |
| | 3110 | <item>11299044</item> |
| | 3111 | </pmid_list> |
| | 3112 | <snippet xsi:type="xsd:string">Identification of polymorphic tandem repeats by direct comparison of <strong>genome</strong> sequence from different bacterial strains : a web-based resource . BACKGROUND...developed tandem repeats database takes advantage of the release of <strong>genome</strong> sequence data for a growing number of bacteria to facilitate...be polymorphic can now be selected in-silico based on <strong>genome</strong> sequence comparison . RESULTS : In addition to the previously described general...</snippet> |
| | 3113 | <url xsi:type="xsd:string">http://minisatellites.u-psud.fr/</url> |
| | 3114 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3115 | xsi:type="n2:Array"> |
| | 3116 | <item> |
| | 3117 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3118 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fminisatellites.u-psud.fr%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3119 | </item> |
| | 3120 | <item> |
| | 3121 | <name xsi:type="xsd:string">Scirus</name> |
| | 3122 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fminisatellites.u-psud.fr%2F&ds=jnl&g=s&t=all</url> |
| | 3123 | </item> |
| | 3124 | <item> |
| | 3125 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3126 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fminisatellites.u-psud.fr%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3127 | </item> |
| | 3128 | <item> |
| | 3129 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3130 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fminisatellites.u-psud.fr%2F&btnG=Search</url> |
| | 3131 | </item> |
| | 3132 | </papers> |
| | 3133 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3134 | </item> |
| | 3135 | <item> |
| | 3136 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3137 | xsi:type="n2:Array"> |
| | 3138 | <item> |
| | 3139 | <name xsi:type="xsd:string">Google</name> |
| | 3140 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&btnG=Google+Search</url> |
| | 3141 | </item> |
| | 3142 | <item> |
| | 3143 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3144 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&kgs=0&kls=1</url> |
| | 3145 | </item> |
| | 3146 | </pages> |
| | 3147 | <id xsi:type="xsd:int">656</id> |
| | 3148 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3149 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3150 | xsi:type="n2:Array"> |
| | 3151 | <item>Chromosome Mapping</item> |
| | 3152 | <item>Conserved Sequence</item> |
| | 3153 | <item>Evolution, Molecular</item> |
| | 3154 | <item>Multigene Family</item> |
| | 3155 | <item>Sequence Analysis, DNA</item> |
| | 3156 | <item>Untranslated Regions</item> |
| | 3157 | </mesh_term_list> |
| | 3158 | <title xsi:type="xsd:string">ISMB 2004 Paper Supplement</title> |
| | 3159 | <rank xsi:type="xsd:int">55</rank> |
| | 3160 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3161 | xsi:type="n2:Array"> |
| | 3162 | <item>15262779</item> |
| | 3163 | </pmid_list> |
| | 3164 | <snippet xsi:type="xsd:string">...DNA. MOTIVATION: It is currently believed that the human <strong>genome</strong> contains about twice as much non-coding functional regions...syntenically conserved sequences in the human, mouse and rat <strong>genomes</strong>, and sequence similarities within the human <strong>genome</strong> itself, in search of families of non-protein-coding...coding sequence, which encompasses 3.7% of the human <strong>genome</strong>. From these, we obtain roughly 12 000 non-singleton...</snippet> |
| | 3165 | <url xsi:type="xsd:string">http://www.soe.ucsc.edu/~jill/dark.html</url> |
| | 3166 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3167 | xsi:type="n2:Array"> |
| | 3168 | <item> |
| | 3169 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3170 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3171 | </item> |
| | 3172 | <item> |
| | 3173 | <name xsi:type="xsd:string">Scirus</name> |
| | 3174 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&ds=jnl&g=s&t=all</url> |
| | 3175 | </item> |
| | 3176 | <item> |
| | 3177 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3178 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3179 | </item> |
| | 3180 | <item> |
| | 3181 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3182 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.soe.ucsc.edu%2F%7Ejill%2Fdark.html&btnG=Search</url> |
| | 3183 | </item> |
| | 3184 | </papers> |
| | 3185 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3186 | </item> |
| | 3187 | <item> |
| | 3188 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3189 | xsi:type="n2:Array"> |
| | 3190 | <item> |
| | 3191 | <name xsi:type="xsd:string">Google</name> |
| | 3192 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.tugraz.at%2F&btnG=Google+Search</url> |
| | 3193 | </item> |
| | 3194 | <item> |
| | 3195 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3196 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.tugraz.at%2F&kgs=0&kls=1</url> |
| | 3197 | </item> |
| | 3198 | </pages> |
| | 3199 | <id xsi:type="xsd:int">1650</id> |
| | 3200 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3201 | <mesh_term_list n2:arrayType="xsd:string[9]" |
| | 3202 | xsi:type="n2:Array"> |
| | 3203 | <item>Algorithms</item> |
| | 3204 | <item>Computational Biology</item> |
| | 3205 | <item>Computer Graphics</item> |
| | 3206 | <item>Gene Expression Profiling</item> |
| | 3207 | <item>Information Storage and Retrieval</item> |
| | 3208 | <item>Oligonucleotide Array Sequence Analysis</item> |
| | 3209 | <item>Sequence Analysis, DNA</item> |
| | 3210 | <item>Software</item> |
| | 3211 | <item>User-Computer Interface</item> |
| | 3212 | </mesh_term_list> |
| | 3213 | <title xsi:type="xsd:string">Bioinformatics Graz - Institute for Genomics and Bioinformatics, Graz University of Technology</title> |
| | 3214 | <rank xsi:type="xsd:int">56</rank> |
| | 3215 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 3216 | xsi:type="n2:Array"> |
| | 3217 | <item>15980551</item> |
| | 3218 | <item>15073026</item> |
| | 3219 | <item>15836795</item> |
| | 3220 | </pmid_list> |
| | 3221 | <snippet xsi:type="xsd:string">...The web service is freely available at https : //pathwayexplorer . <strong>genome</strong> . tugraz . at ; the standalone client can be downloaded at...at ; the standalone client can be downloaded at http : //<strong>genome</strong> . tugraz . at . MARS : microarray analysis , retrieval , and storage system...for the study of gene-expression patterns on a <strong>genomic</strong> scale . As more and more laboratories are adopting microarray...</snippet> |
| | 3222 | <url xsi:type="xsd:string">http://genome.tugraz.at/</url> |
| | 3223 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3224 | xsi:type="n2:Array"> |
| | 3225 | <item> |
| | 3226 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3227 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.tugraz.at%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3228 | </item> |
| | 3229 | <item> |
| | 3230 | <name xsi:type="xsd:string">Scirus</name> |
| | 3231 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.tugraz.at%2F&ds=jnl&g=s&t=all</url> |
| | 3232 | </item> |
| | 3233 | <item> |
| | 3234 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3235 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.tugraz.at%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3236 | </item> |
| | 3237 | <item> |
| | 3238 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3239 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.tugraz.at%2F&btnG=Search</url> |
| | 3240 | </item> |
| | 3241 | </papers> |
| | 3242 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3243 | </item> |
| | 3244 | <item> |
| | 3245 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3246 | xsi:type="n2:Array"> |
| | 3247 | <item> |
| | 3248 | <name xsi:type="xsd:string">Google</name> |
| | 3249 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fsnpsfinder.lanl.gov%2F&btnG=Google+Search</url> |
| | 3250 | </item> |
| | 3251 | <item> |
| | 3252 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3253 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fsnpsfinder.lanl.gov%2F&kgs=0&kls=1</url> |
| | 3254 | </item> |
| | 3255 | </pages> |
| | 3256 | <id xsi:type="xsd:int">11589</id> |
| | 3257 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3258 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 3259 | xsi:type="n2:Array"> |
| | 3260 | <item>Chromosome Mapping</item> |
| | 3261 | <item>DNA Mutational Analysis</item> |
| | 3262 | <item>Genome, Bacterial</item> |
| | 3263 | <item>Genome, Fungal</item> |
| | 3264 | <item>Internet</item> |
| | 3265 | <item>Polymorphism, Single Nucleotide</item> |
| | 3266 | <item>Software</item> |
| | 3267 | </mesh_term_list> |
| | 3268 | <title xsi:type="xsd:string">SNPs Finder</title> |
| | 3269 | <rank xsi:type="xsd:int">57</rank> |
| | 3270 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3271 | xsi:type="n2:Array"> |
| | 3272 | <item href="#id29441100"></item> |
| | 3273 | </pmid_list> |
| | 3274 | <snippet xsi:type="xsd:string">SNPsFinder--a web-based application for <strong>genome</strong>-wide discovery of single nucleotide polymorphisms in microbial <strong>genomes</strong> . SUMMARY : Single nucleotide polymorphisms ( SNPs ) are the most...distinguished otherwise . To facilitate SNP discovery in microbial <strong>genomes</strong> , we have developed a web-based application , SNPsFinder...have developed a web-based application , SNPsFinder , for <strong>genome</strong>-wide identification of SNPs . SNPsFinder takes multiple genome...</snippet> |
| | 3275 | <url xsi:type="xsd:string">http://snpsfinder.lanl.gov/</url> |
| | 3276 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3277 | xsi:type="n2:Array"> |
| | 3278 | <item> |
| | 3279 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3280 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fsnpsfinder.lanl.gov%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3281 | </item> |
| | 3282 | <item> |
| | 3283 | <name xsi:type="xsd:string">Scirus</name> |
| | 3284 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fsnpsfinder.lanl.gov%2F&ds=jnl&g=s&t=all</url> |
| | 3285 | </item> |
| | 3286 | <item> |
| | 3287 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3288 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fsnpsfinder.lanl.gov%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3289 | </item> |
| | 3290 | <item> |
| | 3291 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3292 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fsnpsfinder.lanl.gov%2F&btnG=Search</url> |
| | 3293 | </item> |
| | 3294 | </papers> |
| | 3295 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3296 | </item> |
| | 3297 | <item> |
| | 3298 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3299 | xsi:type="n2:Array"> |
| | 3300 | <item> |
| | 3301 | <name xsi:type="xsd:string">Google</name> |
| | 3302 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.k-state.edu%2Figrow%2F&btnG=Google+Search</url> |
| | 3303 | </item> |
| | 3304 | <item> |
| | 3305 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3306 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.k-state.edu%2Figrow%2F&kgs=0&kls=1</url> |
| | 3307 | </item> |
| | 3308 | </pages> |
| | 3309 | <id xsi:type="xsd:int">11535</id> |
| | 3310 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3311 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 3312 | xsi:type="n2:Array"> |
| | 3313 | <item>Genome, Plant</item> |
| | 3314 | <item>Genomics</item> |
| | 3315 | <item>Sequence Analysis, DNA</item> |
| | 3316 | <item>Triticum</item> |
| | 3317 | </mesh_term_list> |
| | 3318 | <title xsi:type="xsd:string">International Genome Research on Wheat</title> |
| | 3319 | <rank xsi:type="xsd:int">58</rank> |
| | 3320 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3321 | xsi:type="n2:Array"> |
| | 3322 | <item>15514080</item> |
| | 3323 | </pmid_list> |
| | 3324 | <snippet xsi:type="xsd:string">A workshop report on wheat <strong>genome</strong> sequencing : International <strong>Genome</strong> Research on Wheat Consortium . Sponsored by the National Science Foundation and the U . S . Department of Agriculture , a wheat <strong>genome</strong> sequencing workshop was held November 10-11...were to discuss the status of wheat <strong>genomics</strong> , obtain feedback from ongoing <strong>genome</strong> sequencing projects , and develop strategies for sequencing...</snippet> |
| | 3325 | <url xsi:type="xsd:string">http://www.k-state.edu/igrow/</url> |
| | 3326 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3327 | xsi:type="n2:Array"> |
| | 3328 | <item> |
| | 3329 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3330 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.k-state.edu%2Figrow%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3331 | </item> |
| | 3332 | <item> |
| | 3333 | <name xsi:type="xsd:string">Scirus</name> |
| | 3334 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.k-state.edu%2Figrow%2F&ds=jnl&g=s&t=all</url> |
| | 3335 | </item> |
| | 3336 | <item> |
| | 3337 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3338 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.k-state.edu%2Figrow%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3339 | </item> |
| | 3340 | <item> |
| | 3341 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3342 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.k-state.edu%2Figrow%2F&btnG=Search</url> |
| | 3343 | </item> |
| | 3344 | </papers> |
| | 3345 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3346 | </item> |
| | 3347 | <item> |
| | 3348 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3349 | xsi:type="n2:Array"> |
| | 3350 | <item> |
| | 3351 | <name xsi:type="xsd:string">Google</name> |
| | 3352 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&btnG=Google+Search</url> |
| | 3353 | </item> |
| | 3354 | <item> |
| | 3355 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3356 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&kgs=0&kls=1</url> |
| | 3357 | </item> |
| | 3358 | </pages> |
| | 3359 | <id xsi:type="xsd:int">10140</id> |
| | 3360 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3361 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3362 | xsi:type="n2:Array"> |
| | 3363 | <item>Algorithms</item> |
| | 3364 | <item>Chromosome Mapping</item> |
| | 3365 | <item>Sequence Alignment</item> |
| | 3366 | <item>Sequence Analysis, DNA</item> |
| | 3367 | <item>Software</item> |
| | 3368 | <item>User-Computer Interface</item> |
| | 3369 | </mesh_term_list> |
| | 3370 | <title xsi:type="xsd:string">Argo Genome Browser: An Open Source Bioinformatics Visualization Tool</title> |
| | 3371 | <rank xsi:type="xsd:int">59</rank> |
| | 3372 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3373 | xsi:type="n2:Array"> |
| | 3374 | <item>16709588</item> |
| | 3375 | </pmid_list> |
| | 3376 | <snippet xsi:type="xsd:string">Combo : a whole <strong>genome</strong> comparative browser . SUMMARY : Combo is a comparative <strong>genome</strong> browser that provides a dynamic view of whole <strong>genome</strong> alignments along with their associated annotations . Combo provides two different visualization perspectives . The perpendicular ( dot plot ) view provides a dot plot of <strong>genome</strong> alignments synchronized with a display of <strong>genome</strong> annotations along each axis . The parallel view...</snippet> |
| | 3377 | <url xsi:type="xsd:string">http://www.broad.mit.edu/annotation/argo/</url> |
| | 3378 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3379 | xsi:type="n2:Array"> |
| | 3380 | <item> |
| | 3381 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3382 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3383 | </item> |
| | 3384 | <item> |
| | 3385 | <name xsi:type="xsd:string">Scirus</name> |
| | 3386 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&ds=jnl&g=s&t=all</url> |
| | 3387 | </item> |
| | 3388 | <item> |
| | 3389 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3390 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3391 | </item> |
| | 3392 | <item> |
| | 3393 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3394 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.broad.mit.edu%2Fannotation%2Fargo%2F&btnG=Search</url> |
| | 3395 | </item> |
| | 3396 | </papers> |
| | 3397 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3398 | </item> |
| | 3399 | <item> |
| | 3400 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3401 | xsi:type="n2:Array"> |
| | 3402 | <item> |
| | 3403 | <name xsi:type="xsd:string">Google</name> |
| | 3404 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbisearch.enzim.hu%2F&btnG=Google+Search</url> |
| | 3405 | </item> |
| | 3406 | <item> |
| | 3407 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3408 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbisearch.enzim.hu%2F&kgs=0&kls=1</url> |
| | 3409 | </item> |
| | 3410 | </pages> |
| | 3411 | <id xsi:type="xsd:int">1123</id> |
| | 3412 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3413 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 3414 | xsi:type="n2:Array"> |
| | 3415 | <item>Chromosome Mapping</item> |
| | 3416 | <item>CpG Islands</item> |
| | 3417 | <item>DNA Methylation</item> |
| | 3418 | <item>DNA Primers</item> |
| | 3419 | <item>Genome</item> |
| | 3420 | <item>Internet</item> |
| | 3421 | <item>Software</item> |
| | 3422 | </mesh_term_list> |
| | 3423 | <title xsi:type="xsd:string">BiSearch: Primer Design and Search Tool</title> |
| | 3424 | <rank xsi:type="xsd:int">60</rank> |
| | 3425 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 3426 | xsi:type="n2:Array"> |
| | 3427 | <item>17951807</item> |
| | 3428 | <item>17022803</item> |
| | 3429 | </pmid_list> |
| | 3430 | <snippet xsi:type="xsd:string">BiSearch: ePCR Tool for Native or Bisulfite-Treated <strong>Genomic</strong> Template. The design of adequate primers for polymerase chain reaction...products. Such examples are GC-rich native or bisulfite-treated <strong>genomic</strong> DNA sequences. Bisulfite treatment leads to the specific conversion of...cytosines to uracyls. This is the key step of bisulfite <strong>genomic</strong> sequencing, widely used to determine DNA methylation of a sequence...</snippet> |
| | 3431 | <url xsi:type="xsd:string">http://bisearch.enzim.hu/</url> |
| | 3432 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3433 | xsi:type="n2:Array"> |
| | 3434 | <item> |
| | 3435 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3436 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbisearch.enzim.hu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3437 | </item> |
| | 3438 | <item> |
| | 3439 | <name xsi:type="xsd:string">Scirus</name> |
| | 3440 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbisearch.enzim.hu%2F&ds=jnl&g=s&t=all</url> |
| | 3441 | </item> |
| | 3442 | <item> |
| | 3443 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3444 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbisearch.enzim.hu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3445 | </item> |
| | 3446 | <item> |
| | 3447 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3448 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbisearch.enzim.hu%2F&btnG=Search</url> |
| | 3449 | </item> |
| | 3450 | </papers> |
| | 3451 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3452 | </item> |
| | 3453 | <item> |
| | 3454 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3455 | xsi:type="n2:Array"> |
| | 3456 | <item> |
| | 3457 | <name xsi:type="xsd:string">Google</name> |
| | 3458 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&btnG=Google+Search</url> |
| | 3459 | </item> |
| | 3460 | <item> |
| | 3461 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3462 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&kgs=0&kls=1</url> |
| | 3463 | </item> |
| | 3464 | </pages> |
| | 3465 | <id xsi:type="xsd:int">3868</id> |
| | 3466 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3467 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 3468 | xsi:type="n2:Array"> |
| | 3469 | <item>Caenorhabditis</item> |
| | 3470 | <item>Caenorhabditis elegans</item> |
| | 3471 | <item>DNA Footprinting</item> |
| | 3472 | <item>Genes, Helminth</item> |
| | 3473 | <item>Genome</item> |
| | 3474 | <item>Phylogeny</item> |
| | 3475 | <item>Software</item> |
| | 3476 | <item>Transcription Factors</item> |
| | 3477 | </mesh_term_list> |
| | 3478 | <title xsi:type="xsd:string">C. elegans/C. briggsae Transcription Factor Binding Site Search</title> |
| | 3479 | <rank xsi:type="xsd:int">61</rank> |
| | 3480 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3481 | xsi:type="n2:Array"> |
| | 3482 | <item>15113408</item> |
| | 3483 | </pmid_list> |
| | 3484 | <snippet xsi:type="xsd:string">CisOrtho : a program pipeline for <strong>genome</strong>-wide identification of transcription factor target genes...genes using phylogenetic footprinting . BACKGROUND : All known <strong>genomes</strong> code for a large number of transcription...how these transcription factors act on a <strong>genome</strong> wide level , that is , through what target...identifying transcription factor target genes in whole <strong>genomes</strong> . Starting from a consensus binding site , represented...</snippet> |
| | 3485 | <url xsi:type="xsd:string">http://www.wormbase.org/cisortho/</url> |
| | 3486 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3487 | xsi:type="n2:Array"> |
| | 3488 | <item> |
| | 3489 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3490 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3491 | </item> |
| | 3492 | <item> |
| | 3493 | <name xsi:type="xsd:string">Scirus</name> |
| | 3494 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&ds=jnl&g=s&t=all</url> |
| | 3495 | </item> |
| | 3496 | <item> |
| | 3497 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3498 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3499 | </item> |
| | 3500 | <item> |
| | 3501 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3502 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.wormbase.org%2Fcisortho%2F&btnG=Search</url> |
| | 3503 | </item> |
| | 3504 | </papers> |
| | 3505 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3506 | </item> |
| | 3507 | <item> |
| | 3508 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3509 | xsi:type="n2:Array"> |
| | 3510 | <item> |
| | 3511 | <name xsi:type="xsd:string">Google</name> |
| | 3512 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.nematodes.org%2F&btnG=Google+Search</url> |
| | 3513 | </item> |
| | 3514 | <item> |
| | 3515 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3516 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.nematodes.org%2F&kgs=0&kls=1</url> |
| | 3517 | </item> |
| | 3518 | </pages> |
| | 3519 | <id xsi:type="xsd:int">4969</id> |
| | 3520 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3521 | <mesh_term_list n2:arrayType="xsd:string[11]" |
| | 3522 | xsi:type="n2:Array"> |
| | 3523 | <item>Chromatography</item> |
| | 3524 | <item>Chromosome Mapping</item> |
| | 3525 | <item>Computational Biology</item> |
| | 3526 | <item>Databases, Genetic</item> |
| | 3527 | <item>Expressed Sequence Tags</item> |
| | 3528 | <item>Nematoda</item> |
| | 3529 | <item>Parasites</item> |
| | 3530 | <item>Sequence Alignment</item> |
| | 3531 | <item>Sequence Analysis, DNA</item> |
| | 3532 | <item>Software</item> |
| | 3533 | <item>User-Computer Interface</item> |
| | 3534 | </mesh_term_list> |
| | 3535 | <title xsi:type="xsd:string">www.nematodes.org - the Home of Nematode and Neglected Genomics in the Blaxter Lab</title> |
| | 3536 | <rank xsi:type="xsd:int">62</rank> |
| | 3537 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 3538 | xsi:type="n2:Array"> |
| | 3539 | <item href="#id29324130"></item> |
| | 3540 | <item>14681449</item> |
| | 3541 | </pmid_list> |
| | 3542 | <snippet xsi:type="xsd:string">...A Anthony M Blaxter Sequence Homology Gene Expression Profiling <strong>Genomics</strong> Sequence Alignment Nematoda Chromosome Mapping User-Computer Interface Sequence Analysis, DNA Chromatography Parasites Expressed Sequence Tags Databases, Genetic <strong>Genome</strong> Information Storage and Retrieval Genes, Helminth Internet Computational Biology Software Databases, Nucleic Acid Animals Databases, Genetic Sequence Alignment Nematoda Computational Biology Software Chromosome Mapping User-Computer Interface Sequence Analysis, ... Chromatography Expressed Sequence Tags Parasites Genes Gene Components Biology...</snippet> |
| | 3543 | <url xsi:type="xsd:string">http://www.nematodes.org/</url> |
| | 3544 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3545 | xsi:type="n2:Array"> |
| | 3546 | <item> |
| | 3547 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3548 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.nematodes.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3549 | </item> |
| | 3550 | <item> |
| | 3551 | <name xsi:type="xsd:string">Scirus</name> |
| | 3552 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.nematodes.org%2F&ds=jnl&g=s&t=all</url> |
| | 3553 | </item> |
| | 3554 | <item> |
| | 3555 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3556 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.nematodes.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3557 | </item> |
| | 3558 | <item> |
| | 3559 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3560 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.nematodes.org%2F&btnG=Search</url> |
| | 3561 | </item> |
| | 3562 | </papers> |
| | 3563 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3564 | </item> |
| | 3565 | <item> |
| | 3566 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3567 | xsi:type="n2:Array"> |
| | 3568 | <item> |
| | 3569 | <name xsi:type="xsd:string">Google</name> |
| | 3570 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&btnG=Google+Search</url> |
| | 3571 | </item> |
| | 3572 | <item> |
| | 3573 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3574 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&kgs=0&kls=1</url> |
| | 3575 | </item> |
| | 3576 | </pages> |
| | 3577 | <id xsi:type="xsd:int">9935</id> |
| | 3578 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3579 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3580 | xsi:type="n2:Array"> |
| | 3581 | <item>Computational Biology</item> |
| | 3582 | <item>Databases, Nucleic Acid</item> |
| | 3583 | <item>Genome, Viral</item> |
| | 3584 | <item>Multigene Family</item> |
| | 3585 | <item>Poxviridae</item> |
| | 3586 | <item>Sequence Analysis, DNA</item> |
| | 3587 | </mesh_term_list> |
| | 3588 | <title xsi:type="xsd:string">Poxvirus Bioinformatics Resource Center</title> |
| | 3589 | <rank xsi:type="xsd:int">63</rank> |
| | 3590 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 3591 | xsi:type="n2:Array"> |
| | 3592 | <item>12805459</item> |
| | 3593 | <item>15608205</item> |
| | 3594 | </pmid_list> |
| | 3595 | <snippet xsi:type="xsd:string">...the project . The current release consists of over 35 complete <strong>genomic</strong> sequences of various genera , species and strains of viruses from...Roper C Buck AL Hunter SS Changayil Amino Acid Sequence <strong>Genomics</strong> Internet Sequence Homology, Amino Acid Poxviridae Database Management Systems Multigene Family <strong>Genome</strong>, Viral Computational Biology Databases, Nucleic Acid Software User-Computer Interface Sequence Analysis, DNA DNA, Viral Molecular Sequence Data Computational Biology Databases, Nucleic Acid Sequence Analysis, ... Poxviridae Multigene Family <strong>Genome</strong>, Viral Genes Biology Medical Informatics <strong>Genome</strong> Components Information Systems Databases, Genetic Genome Genetic Techniques Information Storage...</snippet> |
| | 3596 | <url xsi:type="xsd:string">http://www.poxvirus.org/index.asp?bhjs=0</url> |
| | 3597 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3598 | xsi:type="n2:Array"> |
| | 3599 | <item> |
| | 3600 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3601 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3602 | </item> |
| | 3603 | <item> |
| | 3604 | <name xsi:type="xsd:string">Scirus</name> |
| | 3605 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&ds=jnl&g=s&t=all</url> |
| | 3606 | </item> |
| | 3607 | <item> |
| | 3608 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3609 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3610 | </item> |
| | 3611 | <item> |
| | 3612 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3613 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.poxvirus.org%2Findex.asp%3Fbhjs%3D0&btnG=Search</url> |
| | 3614 | </item> |
| | 3615 | </papers> |
| | 3616 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3617 | </item> |
| | 3618 | <item> |
| | 3619 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3620 | xsi:type="n2:Array"> |
| | 3621 | <item> |
| | 3622 | <name xsi:type="xsd:string">Google</name> |
| | 3623 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttps%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&btnG=Google+Search</url> |
| | 3624 | </item> |
| | 3625 | <item> |
| | 3626 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3627 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:https%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&kgs=0&kls=1</url> |
| | 3628 | </item> |
| | 3629 | </pages> |
| | 3630 | <id xsi:type="xsd:int">7219</id> |
| | 3631 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3632 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 3633 | xsi:type="n2:Array"> |
| | 3634 | <item>Chromosome Mapping</item> |
| | 3635 | <item>Databases, Genetic</item> |
| | 3636 | <item>Internet</item> |
| | 3637 | <item>Prokaryotic Cells</item> |
| | 3638 | <item>Sequence Analysis, DNA</item> |
| | 3639 | <item>Software</item> |
| | 3640 | <item>User-Computer Interface</item> |
| | 3641 | </mesh_term_list> |
| | 3642 | <title xsi:type="xsd:string">REGANOR: Sequence Upload</title> |
| | 3643 | <rank xsi:type="xsd:int">64</rank> |
| | 3644 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3645 | xsi:type="n2:Array"> |
| | 3646 | <item>16922601</item> |
| | 3647 | </pmid_list> |
| | 3648 | <snippet xsi:type="xsd:string">REGANOR : a gene prediction server for prokaryotic <strong>genomes</strong> and a database of high quality gene predictions for prokaryotes . With >1,000 prokaryotic <strong>genome</strong> sequencing projects ongoing or already finished , comprehensive comparative analysis of the gene content of these <strong>genomes</strong> has become viable . To allow for a meaningful comparative analysis , gene prediction of the various <strong>genomes</strong> should be as accurate as possible . It...</snippet> |
| | 3649 | <url xsi:type="xsd:string">https://www.CeBiTec.Uni-Bielefeld.DE/groups/brf/software/reganor/cgi-bin/reganor_upload.cgi</url> |
| | 3650 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3651 | xsi:type="n2:Array"> |
| | 3652 | <item> |
| | 3653 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3654 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=https%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3655 | </item> |
| | 3656 | <item> |
| | 3657 | <name xsi:type="xsd:string">Scirus</name> |
| | 3658 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=https%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&ds=jnl&g=s&t=all</url> |
| | 3659 | </item> |
| | 3660 | <item> |
| | 3661 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3662 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=https%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3663 | </item> |
| | 3664 | <item> |
| | 3665 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3666 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=https%3A%2F%2Fwww.CeBiTec.Uni-Bielefeld.DE%2Fgroups%2Fbrf%2Fsoftware%2Freganor%2Fcgi-bin%2Freganor_upload.cgi&btnG=Search</url> |
| | 3667 | </item> |
| | 3668 | </papers> |
| | 3669 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3670 | </item> |
| | 3671 | <item> |
| | 3672 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3673 | xsi:type="n2:Array"> |
| | 3674 | <item> |
| | 3675 | <name xsi:type="xsd:string">Google</name> |
| | 3676 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&btnG=Google+Search</url> |
| | 3677 | </item> |
| | 3678 | <item> |
| | 3679 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3680 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&kgs=0&kls=1</url> |
| | 3681 | </item> |
| | 3682 | </pages> |
| | 3683 | <id xsi:type="xsd:int">10011</id> |
| | 3684 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3685 | <mesh_term_list n2:arrayType="xsd:string[3]" |
| | 3686 | xsi:type="n2:Array"> |
| | 3687 | <item>Genome</item> |
| | 3688 | <item>Sequence Analysis, DNA</item> |
| | 3689 | <item>Software</item> |
| | 3690 | </mesh_term_list> |
| | 3691 | <title xsi:type="xsd:string">Organism selection - genome-tools</title> |
| | 3692 | <rank xsi:type="xsd:int">65</rank> |
| | 3693 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3694 | xsi:type="n2:Array"> |
| | 3695 | <item href="#id29584850"></item> |
| | 3696 | </pmid_list> |
| | 3697 | <snippet xsi:type="xsd:string"><strong>Genome</strong>-tools : a flexible package for <strong>genome</strong> sequence analysis . Genome-tools is a Perl module , a set of programs , and a user...Genome-tools : a flexible package for genome sequence analysis . <strong>Genome</strong>-tools is a Perl module , a set of programs , and a user interface that facilitates...these tools help you in your research, please cite: Lee, W. and Chen, S.L. 2002. "<strong>Genome</strong>-Tools: A Flexible Package for <strong>Genome</strong> Sequence Analysis". Biotechniques 33(6):1334-41. W Lee SL Chen <strong>Genome</strong> Programming Languages Base Sequence DNA, Bacterial Software Chlamydia trachomatis Automatic Data Processing Molecular Sequence Data Sequence Analysis, DNA Software <strong>Genome</strong> Sequence Analysis, ... Computing Methodologies Genetic Techniques Sequence Analysis...</snippet> |
| | 3698 | <url xsi:type="xsd:string">http://hultgren.wustl.edu/genome-tools/</url> |
| | 3699 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3700 | xsi:type="n2:Array"> |
| | 3701 | <item> |
| | 3702 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3703 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3704 | </item> |
| | 3705 | <item> |
| | 3706 | <name xsi:type="xsd:string">Scirus</name> |
| | 3707 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&ds=jnl&g=s&t=all</url> |
| | 3708 | </item> |
| | 3709 | <item> |
| | 3710 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3711 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3712 | </item> |
| | 3713 | <item> |
| | 3714 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3715 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fhultgren.wustl.edu%2Fgenome-tools%2F&btnG=Search</url> |
| | 3716 | </item> |
| | 3717 | </papers> |
| | 3718 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3719 | </item> |
| | 3720 | <item> |
| | 3721 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3722 | xsi:type="n2:Array"> |
| | 3723 | <item> |
| | 3724 | <name xsi:type="xsd:string">Google</name> |
| | 3725 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&btnG=Google+Search</url> |
| | 3726 | </item> |
| | 3727 | <item> |
| | 3728 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3729 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&kgs=0&kls=1</url> |
| | 3730 | </item> |
| | 3731 | </pages> |
| | 3732 | <id xsi:type="xsd:int">10036</id> |
| | 3733 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3734 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3735 | xsi:type="n2:Array"> |
| | 3736 | <item>Chromosomes</item> |
| | 3737 | <item>Genome</item> |
| | 3738 | <item>Models, Genetic</item> |
| | 3739 | <item>Oligonucleotide Array Sequence Analysis</item> |
| | 3740 | <item>Oligonucleotides</item> |
| | 3741 | <item>Sequence Analysis, DNA</item> |
| | 3742 | </mesh_term_list> |
| | 3743 | <title xsi:type="xsd:string">Nishigaki Laboratory</title> |
| | 3744 | <rank xsi:type="xsd:int">66</rank> |
| | 3745 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3746 | xsi:type="n2:Array"> |
| | 3747 | <item>12217906</item> |
| | 3748 | </pmid_list> |
| | 3749 | <snippet xsi:type="xsd:string"><strong>Genome</strong> structures embossed by oligonucleotide-stickiness . MOTIVATION : An...An unmanageably large amount of data on <strong>genome</strong> sequences is accumulating , prompting researchers to develop...DNA of interest , in order to analyze <strong>genome</strong> sequences as a whole . RESULTS : Fifteen representative <strong>genomes</strong> such as Bacillus subtilis , Escherichia coli , Saccharomyces...probe dodecanucleotides , offering the following findings : ( i ) <strong>Genome</strong> sequences can be specifically featured by way...</snippet> |
| | 3750 | <url xsi:type="xsd:string">http://gp.fms.saitama-u.ac.jp/</url> |
| | 3751 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3752 | xsi:type="n2:Array"> |
| | 3753 | <item> |
| | 3754 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3755 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3756 | </item> |
| | 3757 | <item> |
| | 3758 | <name xsi:type="xsd:string">Scirus</name> |
| | 3759 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&ds=jnl&g=s&t=all</url> |
| | 3760 | </item> |
| | 3761 | <item> |
| | 3762 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3763 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3764 | </item> |
| | 3765 | <item> |
| | 3766 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3767 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgp.fms.saitama-u.ac.jp%2F&btnG=Search</url> |
| | 3768 | </item> |
| | 3769 | </papers> |
| | 3770 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3771 | </item> |
| | 3772 | <item> |
| | 3773 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3774 | xsi:type="n2:Array"> |
| | 3775 | <item> |
| | 3776 | <name xsi:type="xsd:string">Google</name> |
| | 3777 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Famos.sourceforge.net%2F&btnG=Google+Search</url> |
| | 3778 | </item> |
| | 3779 | <item> |
| | 3780 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3781 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Famos.sourceforge.net%2F&kgs=0&kls=1</url> |
| | 3782 | </item> |
| | 3783 | </pages> |
| | 3784 | <id xsi:type="xsd:int">8736</id> |
| | 3785 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3786 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 3787 | xsi:type="n2:Array"> |
| | 3788 | <item>Algorithms</item> |
| | 3789 | <item>Chromosome Mapping</item> |
| | 3790 | <item>DNA</item> |
| | 3791 | <item>Sequence Alignment</item> |
| | 3792 | <item>Sequence Analysis, DNA</item> |
| | 3793 | <item>Software</item> |
| | 3794 | </mesh_term_list> |
| | 3795 | <title xsi:type="xsd:string">AMOS - A Modular Open-Source Assembler</title> |
| | 3796 | <rank xsi:type="xsd:int">67</rank> |
| | 3797 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3798 | xsi:type="n2:Array"> |
| | 3799 | <item>17324286</item> |
| | 3800 | </pmid_list> |
| | 3801 | <snippet xsi:type="xsd:string">Minimus : a fast , lightweight <strong>genome</strong> assembler . BACKGROUND : <strong>Genome</strong> assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-<strong>genome</strong> sequencing projects . Many of the most common uses of assemblers , however , are best served by...show that Minimus performs well on several small assembly tasks , including the assembly of viral <strong>genomes</strong> , individual genes , and BAC clones . In addition , we evaluate Minimus' performance in assembling bacterial <strong>genomes</strong> in order to assess its suitability as a component of a larger assembly pipeline . We...</snippet> |
| | 3802 | <url xsi:type="xsd:string">http://amos.sourceforge.net/</url> |
| | 3803 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3804 | xsi:type="n2:Array"> |
| | 3805 | <item> |
| | 3806 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3807 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Famos.sourceforge.net%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3808 | </item> |
| | 3809 | <item> |
| | 3810 | <name xsi:type="xsd:string">Scirus</name> |
| | 3811 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Famos.sourceforge.net%2F&ds=jnl&g=s&t=all</url> |
| | 3812 | </item> |
| | 3813 | <item> |
| | 3814 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3815 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Famos.sourceforge.net%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3816 | </item> |
| | 3817 | <item> |
| | 3818 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3819 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Famos.sourceforge.net%2F&btnG=Search</url> |
| | 3820 | </item> |
| | 3821 | </papers> |
| | 3822 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3823 | </item> |
| | 3824 | <item> |
| | 3825 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3826 | xsi:type="n2:Array"> |
| | 3827 | <item> |
| | 3828 | <name xsi:type="xsd:string">Google</name> |
| | 3829 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&btnG=Google+Search</url> |
| | 3830 | </item> |
| | 3831 | <item> |
| | 3832 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3833 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&kgs=0&kls=1</url> |
| | 3834 | </item> |
| | 3835 | </pages> |
| | 3836 | <id xsi:type="xsd:int">9111</id> |
| | 3837 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3838 | <mesh_term_list n2:arrayType="xsd:string[3]" |
| | 3839 | xsi:type="n2:Array"> |
| | 3840 | <item>DNA</item> |
| | 3841 | <item>Genome, Human</item> |
| | 3842 | <item>Human Genome Project</item> |
| | 3843 | </mesh_term_list> |
| | 3844 | <title xsi:type="xsd:string">Default Page</title> |
| | 3845 | <rank xsi:type="xsd:int">68</rank> |
| | 3846 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3847 | xsi:type="n2:Array"> |
| | 3848 | <item>9847074</item> |
| | 3849 | </pmid_list> |
| | 3850 | <snippet xsi:type="xsd:string">Toward a complete human <strong>genome</strong> sequence . We have begun a joint program...international effort to determine a complete human <strong>genome</strong> sequence . Our strategy is to map large...webace . sanger . ac . uk/HGP/ or http : //<strong>genome</strong> . wustl . edu/gsc/ ) . http://<strong>genome</strong>.wustl.edu/gsc/ text/html Default Page Please visit our home page. MC Enright BG Spratt Humans DNA Internet <strong>Genomic</strong> Library <strong>Genome</strong>, Human Human <strong>Genome</strong> Project Sequence Analysis, DNA Databases, Factual Contig Mapping <strong>Genome</strong>, Human ... Human <strong>Genome</strong> Project Biomedical Research <strong>Genome</strong> Research Genetic Research Science Biology Information Services...</snippet> |
| | 3851 | <url xsi:type="xsd:string">http://genome.wustl.edu/gsc/</url> |
| | 3852 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3853 | xsi:type="n2:Array"> |
| | 3854 | <item> |
| | 3855 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3856 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3857 | </item> |
| | 3858 | <item> |
| | 3859 | <name xsi:type="xsd:string">Scirus</name> |
| | 3860 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&ds=jnl&g=s&t=all</url> |
| | 3861 | </item> |
| | 3862 | <item> |
| | 3863 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3864 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3865 | </item> |
| | 3866 | <item> |
| | 3867 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3868 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.wustl.edu%2Fgsc%2F&btnG=Search</url> |
| | 3869 | </item> |
| | 3870 | </papers> |
| | 3871 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3872 | </item> |
| | 3873 | <item> |
| | 3874 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3875 | xsi:type="n2:Array"> |
| | 3876 | <item> |
| | 3877 | <name xsi:type="xsd:string">Google</name> |
| | 3878 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&btnG=Google+Search</url> |
| | 3879 | </item> |
| | 3880 | <item> |
| | 3881 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3882 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&kgs=0&kls=1</url> |
| | 3883 | </item> |
| | 3884 | </pages> |
| | 3885 | <id xsi:type="xsd:int">2623</id> |
| | 3886 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3887 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 3888 | xsi:type="n2:Array"> |
| | 3889 | <item>Algorithms</item> |
| | 3890 | <item>Chromosome Mapping</item> |
| | 3891 | <item>Conserved Sequence</item> |
| | 3892 | <item>Evolution, Molecular</item> |
| | 3893 | <item>Sequence Alignment</item> |
| | 3894 | <item>Sequence Analysis, DNA</item> |
| | 3895 | <item>Sequence Homology, Nucleic Acid</item> |
| | 3896 | </mesh_term_list> |
| | 3897 | <title xsi:type="xsd:string">Ortholuge: Improving the specificity of high-throughput ortholog prediction</title> |
| | 3898 | <rank xsi:type="xsd:int">69</rank> |
| | 3899 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3900 | xsi:type="n2:Array"> |
| | 3901 | <item>16729895</item> |
| | 3902 | </pmid_list> |
| | 3903 | <snippet xsi:type="xsd:string">...prediction has become an important component of comparative <strong>genomics</strong> and <strong>genome</strong> annotation . The gold standard phylogenetic analysis approach of comparing available organismal phylogeny to gene phylogeny is not easily automated for <strong>genome</strong>-wide analysis ; therefore , ortholog prediction for large <strong>genome</strong>-scale datasets is typically performed using a reciprocal...predict a paralog as an ortholog when incomplete <strong>genome</strong> sequences or gene loss is involved . In addition...</snippet> |
| | 3904 | <url xsi:type="xsd:string">http://www.pathogenomics.ca/ortholuge/</url> |
| | 3905 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3906 | xsi:type="n2:Array"> |
| | 3907 | <item> |
| | 3908 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3909 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3910 | </item> |
| | 3911 | <item> |
| | 3912 | <name xsi:type="xsd:string">Scirus</name> |
| | 3913 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&ds=jnl&g=s&t=all</url> |
| | 3914 | </item> |
| | 3915 | <item> |
| | 3916 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3917 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3918 | </item> |
| | 3919 | <item> |
| | 3920 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3921 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.pathogenomics.ca%2Fortholuge%2F&btnG=Search</url> |
| | 3922 | </item> |
| | 3923 | </papers> |
| | 3924 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 3925 | </item> |
| | 3926 | <item> |
| | 3927 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3928 | xsi:type="n2:Array"> |
| | 3929 | <item> |
| | 3930 | <name xsi:type="xsd:string">Google</name> |
| | 3931 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&btnG=Google+Search</url> |
| | 3932 | </item> |
| | 3933 | <item> |
| | 3934 | <name xsi:type="xsd:string">AltaVista</name> |
| | 3935 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&kgs=0&kls=1</url> |
| | 3936 | </item> |
| | 3937 | </pages> |
| | 3938 | <id xsi:type="xsd:int">376</id> |
| | 3939 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3940 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 3941 | xsi:type="n2:Array"> |
| | 3942 | <item>Database Management Systems</item> |
| | 3943 | <item>Databases, Nucleic Acid</item> |
| | 3944 | <item>Documentation</item> |
| | 3945 | <item>Genome</item> |
| | 3946 | <item>Information Storage and Retrieval</item> |
| | 3947 | <item>Sequence Alignment</item> |
| | 3948 | <item>Sequence Analysis, DNA</item> |
| | 3949 | <item>User-Computer Interface</item> |
| | 3950 | </mesh_term_list> |
| | 3951 | <title xsi:type="xsd:string">BugView Genome Browser</title> |
| | 3952 | <rank xsi:type="xsd:int">70</rank> |
| | 3953 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 3954 | xsi:type="n2:Array"> |
| | 3955 | <item>14693822</item> |
| | 3956 | </pmid_list> |
| | 3957 | <snippet xsi:type="xsd:string">BugView : a browser for comparing <strong>genomes</strong> . BugView is a Java application for visualizing...homologous genes on a pair of related <strong>genomes</strong> , and can also be used to view...can also be used to view individual <strong>genomes</strong> . It accepts files of prokaryotic or eukaryotic...It accepts files of prokaryotic or eukaryotic <strong>genomes</strong> in GenBank format and allows users to...</snippet> |
| | 3958 | <url xsi:type="xsd:string">http://www.gla.ac.uk/~dpl1n/BugView/</url> |
| | 3959 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 3960 | xsi:type="n2:Array"> |
| | 3961 | <item> |
| | 3962 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 3963 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 3964 | </item> |
| | 3965 | <item> |
| | 3966 | <name xsi:type="xsd:string">Scirus</name> |
| | 3967 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&ds=jnl&g=s&t=all</url> |
| | 3968 | </item> |
| | 3969 | <item> |
| | 3970 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 3971 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 3972 | </item> |
| | 3973 | <item> |
| | 3974 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 3975 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.gla.ac.uk%2F%7Edpl1n%2FBugView%2F&btnG=Search</url> |
| | 3976 | </item> |
| | 3977 | </papers> |
| | 3978 | <average_stars xsi:type="xsd:double">+3</average_stars> |
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| | 3980 | <item> |
| | 3981 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 3982 | xsi:type="n2:Array"> |
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| | 3984 | <name xsi:type="xsd:string">Google</name> |
| | 3985 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&btnG=Google+Search</url> |
| | 3986 | </item> |
| | 3987 | <item> |
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| | 3989 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&kgs=0&kls=1</url> |
| | 3990 | </item> |
| | 3991 | </pages> |
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| | 3993 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 3994 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 3995 | xsi:type="n2:Array"> |
| | 3996 | <item>Evolution, Molecular</item> |
| | 3997 | <item>Gene Duplication</item> |
| | 3998 | <item>Gene Expression Profiling</item> |
| | 3999 | <item>Genome</item> |
| | 4000 | <item>Phylogeny</item> |
| | 4001 | <item>Sequence Alignment</item> |
| | 4002 | <item>Sequence Analysis, DNA</item> |
| | 4003 | <item>Software</item> |
| | 4004 | </mesh_term_list> |
| | 4005 | <title xsi:type="xsd:string">Phylogentic Dating of Whole Genome Duplications</title> |
| | 4006 | <rank xsi:type="xsd:int">71</rank> |
| | 4007 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4008 | xsi:type="n2:Array"> |
| | 4009 | <item>14734308</item> |
| | 4010 | </pmid_list> |
| | 4011 | <snippet xsi:type="xsd:string">A comparative phylogenetic approach for dating whole <strong>genome</strong> duplication events . MOTIVATION : Whole <strong>genome</strong> duplications have played a major role in...role in determining the structure of eukaryotic <strong>genomes</strong> . Current evidence revealing large blocks of duplicated...challenge for researchers attempting to utilize comparative <strong>genomics</strong> techniques . Understanding the timing of duplication events...</snippet> |
| | 4012 | <url xsi:type="xsd:string">http://plantgenome.agtec.uga.edu/bioinformatics/dating/</url> |
| | 4013 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4014 | xsi:type="n2:Array"> |
| | 4015 | <item> |
| | 4016 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4017 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4018 | </item> |
| | 4019 | <item> |
| | 4020 | <name xsi:type="xsd:string">Scirus</name> |
| | 4021 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&ds=jnl&g=s&t=all</url> |
| | 4022 | </item> |
| | 4023 | <item> |
| | 4024 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4025 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4026 | </item> |
| | 4027 | <item> |
| | 4028 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4029 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fplantgenome.agtec.uga.edu%2Fbioinformatics%2Fdating%2F&btnG=Search</url> |
| | 4030 | </item> |
| | 4031 | </papers> |
| | 4032 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4033 | </item> |
| | 4034 | <item> |
| | 4035 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4036 | xsi:type="n2:Array"> |
| | 4037 | <item> |
| | 4038 | <name xsi:type="xsd:string">Google</name> |
| | 4039 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&btnG=Google+Search</url> |
| | 4040 | </item> |
| | 4041 | <item> |
| | 4042 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4043 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&kgs=0&kls=1</url> |
| | 4044 | </item> |
| | 4045 | </pages> |
| | 4046 | <id xsi:type="xsd:int">6628</id> |
| | 4047 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4048 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 4049 | xsi:type="n2:Array"> |
| | 4050 | <item>Databases, Factual</item> |
| | 4051 | <item>Genes</item> |
| | 4052 | <item>Genome</item> |
| | 4053 | <item>Proteins</item> |
| | 4054 | <item>Sequence Analysis, DNA</item> |
| | 4055 | </mesh_term_list> |
| | 4056 | <title xsi:type="xsd:string">The Wellcome Trust Sanger Institute</title> |
| | 4057 | <rank xsi:type="xsd:int">72</rank> |
| | 4058 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4059 | xsi:type="n2:Array"> |
| | 4060 | <item>9847192</item> |
| | 4061 | </pmid_list> |
| | 4062 | <snippet xsi:type="xsd:string">...predicted genes and proteins in sequences of <strong>genome</strong> sequencing projects . INFOGENE is a database of...genes in finished and unfinished sequences from <strong>genome</strong> sequencing projects . Protein sequence similarity searches in...through the WWW server of the Computational <strong>Genomics</strong> Group at http : //genomic . sanger . ac . uk...of the Computational Genomics Group at http : //<strong>genomic</strong> . sanger . ac . uk/db . html http://genomic...</snippet> |
| | 4063 | <url xsi:type="xsd:string">http://genomic.sanger.ac.uk/db.html</url> |
| | 4064 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4065 | xsi:type="n2:Array"> |
| | 4066 | <item> |
| | 4067 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4068 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4069 | </item> |
| | 4070 | <item> |
| | 4071 | <name xsi:type="xsd:string">Scirus</name> |
| | 4072 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&ds=jnl&g=s&t=all</url> |
| | 4073 | </item> |
| | 4074 | <item> |
| | 4075 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4076 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4077 | </item> |
| | 4078 | <item> |
| | 4079 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4080 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenomic.sanger.ac.uk%2Fdb.html&btnG=Search</url> |
| | 4081 | </item> |
| | 4082 | </papers> |
| | 4083 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4084 | </item> |
| | 4085 | <item> |
| | 4086 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4087 | xsi:type="n2:Array"> |
| | 4088 | <item> |
| | 4089 | <name xsi:type="xsd:string">Google</name> |
| | 4090 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&btnG=Google+Search</url> |
| | 4091 | </item> |
| | 4092 | <item> |
| | 4093 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4094 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&kgs=0&kls=1</url> |
| | 4095 | </item> |
| | 4096 | </pages> |
| | 4097 | <id xsi:type="xsd:int">6209</id> |
| | 4098 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4099 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 4100 | xsi:type="n2:Array"> |
| | 4101 | <item>Biotechnology</item> |
| | 4102 | <item>Databases, Genetic</item> |
| | 4103 | <item>Databases, Nucleic Acid</item> |
| | 4104 | <item>Databases, Protein</item> |
| | 4105 | <item>Genomics</item> |
| | 4106 | <item>Sequence Analysis, DNA</item> |
| | 4107 | <item>Sequence Analysis, Protein</item> |
| | 4108 | <item>Sequence Analysis, RNA</item> |
| | 4109 | </mesh_term_list> |
| | 4110 | <title xsi:type="xsd:string">NCBI Reference Sequence (RefSeq)</title> |
| | 4111 | <rank xsi:type="xsd:int">73</rank> |
| | 4112 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 4113 | xsi:type="n2:Array"> |
| | 4114 | <item>15608248</item> |
| | 4115 | <item>17130148</item> |
| | 4116 | <item>12519942</item> |
| | 4117 | </pmid_list> |
| | 4118 | <snippet xsi:type="xsd:string">...sequences ( RefSeq ) : a curated non-redundant sequence database of <strong>genomes</strong> , transcripts and proteins . NCBI's reference sequence ( RefSeq ) database ( http...is a curated non-redundant collection of sequences representing <strong>genomes</strong> , transcripts and proteins . The database includes 3774 organisms spanning...sequence and annotation , especially in the context of complete <strong>genomic</strong> sequence . NCBI Reference Sequence ( RefSeq ) : a curated non-redundant sequence database of <strong>genomes</strong> , transcripts and proteins . The National Center for Biotechnology Information...</snippet> |
| | 4119 | <url xsi:type="xsd:string">http://www.ncbi.nlm.nih.gov/RefSeq/</url> |
| | 4120 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4121 | xsi:type="n2:Array"> |
| | 4122 | <item> |
| | 4123 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4124 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4125 | </item> |
| | 4126 | <item> |
| | 4127 | <name xsi:type="xsd:string">Scirus</name> |
| | 4128 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&ds=jnl&g=s&t=all</url> |
| | 4129 | </item> |
| | 4130 | <item> |
| | 4131 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4132 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4133 | </item> |
| | 4134 | <item> |
| | 4135 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4136 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FRefSeq%2F&btnG=Search</url> |
| | 4137 | </item> |
| | 4138 | </papers> |
| | 4139 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4140 | </item> |
| | 4141 | <item> |
| | 4142 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4143 | xsi:type="n2:Array"> |
| | 4144 | <item> |
| | 4145 | <name xsi:type="xsd:string">Google</name> |
| | 4146 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.flyreg.org%2F&btnG=Google+Search</url> |
| | 4147 | </item> |
| | 4148 | <item> |
| | 4149 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4150 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.flyreg.org%2F&kgs=0&kls=1</url> |
| | 4151 | </item> |
| | 4152 | </pages> |
| | 4153 | <id xsi:type="xsd:int">4362</id> |
| | 4154 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4155 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 4156 | xsi:type="n2:Array"> |
| | 4157 | <item>Chromosome Mapping</item> |
| | 4158 | <item>DNA Footprinting</item> |
| | 4159 | <item>Databases, Genetic</item> |
| | 4160 | <item>Drosophila Proteins</item> |
| | 4161 | <item>Protein Footprinting</item> |
| | 4162 | <item>Transcription Factors</item> |
| | 4163 | </mesh_term_list> |
| | 4164 | <title xsi:type="xsd:string">Drosophila DNase I Footprint Database</title> |
| | 4165 | <rank xsi:type="xsd:int">74</rank> |
| | 4166 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4167 | xsi:type="n2:Array"> |
| | 4168 | <item>15572468</item> |
| | 4169 | </pmid_list> |
| | 4170 | <snippet xsi:type="xsd:string">Drosophila DNase I footprint database : a systematic <strong>genome</strong> annotation of transcription factor binding sites in the fruitfly , Drosophila...such a dataset based on a systematic literature curation and <strong>genome</strong> annotation of DNase I footprints for the fruitfly , Drosophila melanogaster . Using the experimental results of 201 primary references , we annotated 1367 binding sites from 87 transcription factors and 101 target genes in the D.melanogaster <strong>genome</strong> sequence . These data will provide a rich resource for future...</snippet> |
| | 4171 | <url xsi:type="xsd:string">http://www.flyreg.org/</url> |
| | 4172 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4173 | xsi:type="n2:Array"> |
| | 4174 | <item> |
| | 4175 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4176 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.flyreg.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4177 | </item> |
| | 4178 | <item> |
| | 4179 | <name xsi:type="xsd:string">Scirus</name> |
| | 4180 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.flyreg.org%2F&ds=jnl&g=s&t=all</url> |
| | 4181 | </item> |
| | 4182 | <item> |
| | 4183 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4184 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.flyreg.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4185 | </item> |
| | 4186 | <item> |
| | 4187 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4188 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.flyreg.org%2F&btnG=Search</url> |
| | 4189 | </item> |
| | 4190 | </papers> |
| | 4191 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4192 | </item> |
| | 4193 | <item> |
| | 4194 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4195 | xsi:type="n2:Array"> |
| | 4196 | <item> |
| | 4197 | <name xsi:type="xsd:string">Google</name> |
| | 4198 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&btnG=Google+Search</url> |
| | 4199 | </item> |
| | 4200 | <item> |
| | 4201 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4202 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&kgs=0&kls=1</url> |
| | 4203 | </item> |
| | 4204 | </pages> |
| | 4205 | <id xsi:type="xsd:int">11092</id> |
| | 4206 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4207 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 4208 | xsi:type="n2:Array"> |
| | 4209 | <item>DNA Primers</item> |
| | 4210 | <item>Genome, Human</item> |
| | 4211 | <item>Polymerase Chain Reaction</item> |
| | 4212 | <item>Software</item> |
| | 4213 | </mesh_term_list> |
| | 4214 | <title xsi:type="xsd:string">PrimerStation</title> |
| | 4215 | <rank xsi:type="xsd:int">75</rank> |
| | 4216 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4217 | xsi:type="n2:Array"> |
| | 4218 | <item>16845094</item> |
| | 4219 | </pmid_list> |
| | 4220 | <snippet xsi:type="xsd:string">PrimerStation : a highly specific multiplex <strong>genomic</strong> PCR primer design server for the human genome...genomic PCR primer design server for the human <strong>genome</strong> . PrimerStation ( http : //ps . cb . k . u-tokyo . ac...sets guaranteeing high specificity against the entire human <strong>genome</strong> . To achieve high accuracy , we used the hybridization...and no web service checks the entire human <strong>genome</strong> and returns a highly specific primer set calculated...</snippet> |
| | 4221 | <url xsi:type="xsd:string">http://ps.cb.k.u-tokyo.ac.jp/index.html</url> |
| | 4222 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4223 | xsi:type="n2:Array"> |
| | 4224 | <item> |
| | 4225 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4226 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4227 | </item> |
| | 4228 | <item> |
| | 4229 | <name xsi:type="xsd:string">Scirus</name> |
| | 4230 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&ds=jnl&g=s&t=all</url> |
| | 4231 | </item> |
| | 4232 | <item> |
| | 4233 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4234 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4235 | </item> |
| | 4236 | <item> |
| | 4237 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4238 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fps.cb.k.u-tokyo.ac.jp%2Findex.html&btnG=Search</url> |
| | 4239 | </item> |
| | 4240 | </papers> |
| | 4241 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4242 | </item> |
| | 4243 | <item> |
| | 4244 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4245 | xsi:type="n2:Array"> |
| | 4246 | <item> |
| | 4247 | <name xsi:type="xsd:string">Google</name> |
| | 4248 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&btnG=Google+Search</url> |
| | 4249 | </item> |
| | 4250 | <item> |
| | 4251 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4252 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&kgs=0&kls=1</url> |
| | 4253 | </item> |
| | 4254 | </pages> |
| | 4255 | <id xsi:type="xsd:int">7662</id> |
| | 4256 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4257 | <mesh_term_list n2:arrayType="xsd:string[8]" |
| | 4258 | xsi:type="n2:Array"> |
| | 4259 | <item>DNA-Binding Proteins</item> |
| | 4260 | <item>Databases, Protein</item> |
| | 4261 | <item>Escherichia coli</item> |
| | 4262 | <item>Escherichia coli Proteins</item> |
| | 4263 | <item>Eukaryotic Cells</item> |
| | 4264 | <item>Proteins</item> |
| | 4265 | <item>Thioredoxin</item> |
| | 4266 | <item>Thiosulfate Sulfurtransferase</item> |
| | 4267 | </mesh_term_list> |
| | 4268 | <title xsi:type="xsd:string">COGs - Clusters of Orthologous Groups</title> |
| | 4269 | <rank xsi:type="xsd:int">76</rank> |
| | 4270 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 4271 | xsi:type="n2:Array"> |
| | 4272 | <item>10735872</item> |
| | 4273 | <item>12969510</item> |
| | 4274 | </pmid_list> |
| | 4275 | <snippet xsi:type="xsd:string">...includes eukaryotes . BACKGROUND : The availability of multiple , essentially complete <strong>genome</strong> sequences of prokaryotes and eukaryotes spurred both the demand and the opportunity for the construction of an evolutionary classification of genes from these <strong>genomes</strong> . Such a classification system based on orthologous relationships between genes appears to be a natural framework for comparative <strong>genomics</strong> and should facilitate both functional annotation of genomes and...</snippet> |
| | 4276 | <url xsi:type="xsd:string">http://www.ncbi.nlm.nih.gov/COG/</url> |
| | 4277 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4278 | xsi:type="n2:Array"> |
| | 4279 | <item> |
| | 4280 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4281 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4282 | </item> |
| | 4283 | <item> |
| | 4284 | <name xsi:type="xsd:string">Scirus</name> |
| | 4285 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&ds=jnl&g=s&t=all</url> |
| | 4286 | </item> |
| | 4287 | <item> |
| | 4288 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4289 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4290 | </item> |
| | 4291 | <item> |
| | 4292 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4293 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2FCOG%2F&btnG=Search</url> |
| | 4294 | </item> |
| | 4295 | </papers> |
| | 4296 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4297 | </item> |
| | 4298 | <item> |
| | 4299 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4300 | xsi:type="n2:Array"> |
| | 4301 | <item> |
| | 4302 | <name xsi:type="xsd:string">Google</name> |
| | 4303 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Frulai.cshl.edu%2F&btnG=Google+Search</url> |
| | 4304 | </item> |
| | 4305 | <item> |
| | 4306 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4307 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Frulai.cshl.edu%2F&kgs=0&kls=1</url> |
| | 4308 | </item> |
| | 4309 | </pages> |
| | 4310 | <id xsi:type="xsd:int">12320</id> |
| | 4311 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4312 | <mesh_term_list n2:arrayType="xsd:string[10]" |
| | 4313 | xsi:type="n2:Array"> |
| | 4314 | <item>Algorithms</item> |
| | 4315 | <item>DNA</item> |
| | 4316 | <item>Databases, Factual</item> |
| | 4317 | <item>Exons</item> |
| | 4318 | <item>Genes, Fungal</item> |
| | 4319 | <item>Open Reading Frames</item> |
| | 4320 | <item>Promoter Regions (Genetics)</item> |
| | 4321 | <item>Saccharomyces cerevisiae</item> |
| | 4322 | <item>Schizosaccharomyces</item> |
| | 4323 | <item>Software</item> |
| | 4324 | </mesh_term_list> |
| | 4325 | <title xsi:type="xsd:string">Michael Q. Zhang's Lab: Computational Biology and Bioinformatics</title> |
| | 4326 | <rank xsi:type="xsd:int">77</rank> |
| | 4327 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 4328 | xsi:type="n2:Array"> |
| | 4329 | <item>11448878</item> |
| | 4330 | <item>10487868</item> |
| | 4331 | <item>9675815</item> |
| | 4332 | </pmid_list> |
| | 4333 | <snippet xsi:type="xsd:string">...genes . In particular JTEF performs well on larger <strong>genomic</strong> contigs containing multiple genes and significant amounts of...DNA . It will become a valuable tool for <strong>genome</strong> annotation and gene functional studies . AVAILABILITY : JTEF is...elements of the yeast Saccharomyces cerevisiae on a <strong>genomic</strong> scale , we have developed a comprehensive yeast-specific...</snippet> |
| | 4334 | <url xsi:type="xsd:string">http://rulai.cshl.edu/</url> |
| | 4335 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4336 | xsi:type="n2:Array"> |
| | 4337 | <item> |
| | 4338 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4339 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Frulai.cshl.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4340 | </item> |
| | 4341 | <item> |
| | 4342 | <name xsi:type="xsd:string">Scirus</name> |
| | 4343 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Frulai.cshl.edu%2F&ds=jnl&g=s&t=all</url> |
| | 4344 | </item> |
| | 4345 | <item> |
| | 4346 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4347 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Frulai.cshl.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4348 | </item> |
| | 4349 | <item> |
| | 4350 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4351 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Frulai.cshl.edu%2F&btnG=Search</url> |
| | 4352 | </item> |
| | 4353 | </papers> |
| | 4354 | <average_stars xsi:type="xsd:double">+0</average_stars> |
| | 4355 | </item> |
| | 4356 | <item> |
| | 4357 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4358 | xsi:type="n2:Array"> |
| | 4359 | <item> |
| | 4360 | <name xsi:type="xsd:string">Google</name> |
| | 4361 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Famiga.cbmeg.unicamp.br%2F&btnG=Google+Search</url> |
| | 4362 | </item> |
| | 4363 | <item> |
| | 4364 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4365 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Famiga.cbmeg.unicamp.br%2F&kgs=0&kls=1</url> |
| | 4366 | </item> |
| | 4367 | </pages> |
| | 4368 | <id xsi:type="xsd:int">1435</id> |
| | 4369 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4370 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 4371 | xsi:type="n2:Array"> |
| | 4372 | <item>Arthropods</item> |
| | 4373 | <item>DNA, Mitochondrial</item> |
| | 4374 | <item>Database Management Systems</item> |
| | 4375 | <item>Databases, Genetic</item> |
| | 4376 | <item>Genomics</item> |
| | 4377 | </mesh_term_list> |
| | 4378 | <title xsi:type="xsd:string">AMiGA - Arthropodan Mitochondrial Genomes Accessible Database</title> |
| | 4379 | <rank xsi:type="xsd:int">78</rank> |
| | 4380 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4381 | xsi:type="n2:Array"> |
| | 4382 | <item>16446277</item> |
| | 4383 | </pmid_list> |
| | 4384 | <snippet xsi:type="xsd:string">AMiGA : the arthropodan mitochondrial <strong>genomes</strong> accessible database . SUMMARY : The Arthropodan Mitochondrial Genomes Accessible...mitochondrial genomes accessible database . SUMMARY : The Arthropodan Mitochondrial <strong>Genomes</strong> Accessible database ( AMiGA ) is a relational database developed...of data arising from developments in arthropodan mitochondrial <strong>genomics</strong> ( 136 mitochondrial <strong>genomes</strong> as of September 2005 ) . The strengths of AMiGA...</snippet> |
| | 4385 | <url xsi:type="xsd:string">http://amiga.cbmeg.unicamp.br/</url> |
| | 4386 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4387 | xsi:type="n2:Array"> |
| | 4388 | <item> |
| | 4389 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4390 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Famiga.cbmeg.unicamp.br%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4391 | </item> |
| | 4392 | <item> |
| | 4393 | <name xsi:type="xsd:string">Scirus</name> |
| | 4394 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Famiga.cbmeg.unicamp.br%2F&ds=jnl&g=s&t=all</url> |
| | 4395 | </item> |
| | 4396 | <item> |
| | 4397 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4398 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Famiga.cbmeg.unicamp.br%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4399 | </item> |
| | 4400 | <item> |
| | 4401 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4402 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Famiga.cbmeg.unicamp.br%2F&btnG=Search</url> |
| | 4403 | </item> |
| | 4404 | </papers> |
| | 4405 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4406 | </item> |
| | 4407 | <item> |
| | 4408 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4409 | xsi:type="n2:Array"> |
| | 4410 | <item> |
| | 4411 | <name xsi:type="xsd:string">Google</name> |
| | 4412 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fpseudogene.org%2F&btnG=Google+Search</url> |
| | 4413 | </item> |
| | 4414 | <item> |
| | 4415 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4416 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fpseudogene.org%2F&kgs=0&kls=1</url> |
| | 4417 | </item> |
| | 4418 | </pages> |
| | 4419 | <id xsi:type="xsd:int">6728</id> |
| | 4420 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4421 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 4422 | xsi:type="n2:Array"> |
| | 4423 | <item>DNA, Intergenic</item> |
| | 4424 | <item>DNA, Mitochondrial</item> |
| | 4425 | <item>Evolution, Molecular</item> |
| | 4426 | <item>Genome, Human</item> |
| | 4427 | <item>Proteins</item> |
| | 4428 | <item>Pseudogenes</item> |
| | 4429 | <item>Ribosomal Proteins</item> |
| | 4430 | </mesh_term_list> |
| | 4431 | <title xsi:type="xsd:string">Pseudogene.org</title> |
| | 4432 | <rank xsi:type="xsd:int">79</rank> |
| | 4433 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 4434 | xsi:type="n2:Array"> |
| | 4435 | <item>14656962</item> |
| | 4436 | <item>12706105</item> |
| | 4437 | <item>12417195</item> |
| | 4438 | </pmid_list> |
| | 4439 | <snippet xsi:type="xsd:string">...a comprehensive catalog of the processed pseudogenes in the human <strong>genome</strong> . Processed pseudogenes were created by reverse-transcription of mRNAs ; they...DNA Molecular Sequence Data Isochores Caenorhabditis elegans Databases, Genetic Mice <strong>Genome</strong> Phylogeny Internet Base Sequence DNA, Intergenic Proteins <strong>Genome</strong>, Human Computational Biology Genes, Insect RNA Processing, Post-Transcriptional DNA, Mitochondrial Evolution, Molecular Species Specificity Animals Pseudogenes Proteins ..., Intergenic <strong>Genome</strong>, Human Ribosomal Proteins ..., Mitochondrial Evolution, Molecular Pseudogenes Genes ..., Circular <strong>Genome DNA</strong> Proteins Nucleic Acids Biological Phenomena <strong>Genome</strong> Components Evolution...</snippet> |
| | 4440 | <url xsi:type="xsd:string">http://pseudogene.org/</url> |
| | 4441 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4442 | xsi:type="n2:Array"> |
| | 4443 | <item> |
| | 4444 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4445 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fpseudogene.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4446 | </item> |
| | 4447 | <item> |
| | 4448 | <name xsi:type="xsd:string">Scirus</name> |
| | 4449 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fpseudogene.org%2F&ds=jnl&g=s&t=all</url> |
| | 4450 | </item> |
| | 4451 | <item> |
| | 4452 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4453 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fpseudogene.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4454 | </item> |
| | 4455 | <item> |
| | 4456 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4457 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fpseudogene.org%2F&btnG=Search</url> |
| | 4458 | </item> |
| | 4459 | </papers> |
| | 4460 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4461 | </item> |
| | 4462 | <item> |
| | 4463 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4464 | xsi:type="n2:Array"> |
| | 4465 | <item> |
| | 4466 | <name xsi:type="xsd:string">Google</name> |
| | 4467 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fg2.trac.bx.psu.edu%2F&btnG=Google+Search</url> |
| | 4468 | </item> |
| | 4469 | <item> |
| | 4470 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4471 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fg2.trac.bx.psu.edu%2F&kgs=0&kls=1</url> |
| | 4472 | </item> |
| | 4473 | </pages> |
| | 4474 | <id xsi:type="xsd:int">9769</id> |
| | 4475 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4476 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 4477 | xsi:type="n2:Array"> |
| | 4478 | <item>Databases, Genetic</item> |
| | 4479 | <item>Genome</item> |
| | 4480 | <item>Genome, Human</item> |
| | 4481 | <item>Internet</item> |
| | 4482 | <item>Sequence Analysis, DNA</item> |
| | 4483 | <item>Software</item> |
| | 4484 | </mesh_term_list> |
| | 4485 | <title xsi:type="xsd:string">Galaxy - Trac</title> |
| | 4486 | <rank xsi:type="xsd:int">80</rank> |
| | 4487 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 4488 | xsi:type="n2:Array"> |
| | 4489 | <item>17568012</item> |
| | 4490 | <item>16169926</item> |
| | 4491 | </pmid_list> |
| | 4492 | <snippet xsi:type="xsd:string">...vast number of analysis tools including operations on <strong>genomic</strong> intervals , utilities for manipulation of multiple sequence alignments...the ENCODE regions are representative of the entire <strong>genome</strong> by estimating the rate of nucleotide substitution and...edu . Galaxy : a platform for interactive large-scale <strong>genome</strong> analysis . Accessing and analyzing the exponentially expanding <strong>genomic</strong> sequence and functional data pose a challenge for...</snippet> |
| | 4493 | <url xsi:type="xsd:string">http://g2.trac.bx.psu.edu/</url> |
| | 4494 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4495 | xsi:type="n2:Array"> |
| | 4496 | <item> |
| | 4497 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4498 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fg2.trac.bx.psu.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4499 | </item> |
| | 4500 | <item> |
| | 4501 | <name xsi:type="xsd:string">Scirus</name> |
| | 4502 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fg2.trac.bx.psu.edu%2F&ds=jnl&g=s&t=all</url> |
| | 4503 | </item> |
| | 4504 | <item> |
| | 4505 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4506 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fg2.trac.bx.psu.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4507 | </item> |
| | 4508 | <item> |
| | 4509 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4510 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fg2.trac.bx.psu.edu%2F&btnG=Search</url> |
| | 4511 | </item> |
| | 4512 | </papers> |
| | 4513 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4514 | </item> |
| | 4515 | <item> |
| | 4516 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4517 | xsi:type="n2:Array"> |
| | 4518 | <item> |
| | 4519 | <name xsi:type="xsd:string">Google</name> |
| | 4520 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&btnG=Google+Search</url> |
| | 4521 | </item> |
| | 4522 | <item> |
| | 4523 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4524 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&kgs=0&kls=1</url> |
| | 4525 | </item> |
| | 4526 | </pages> |
| | 4527 | <id xsi:type="xsd:int">6441</id> |
| | 4528 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4529 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 4530 | xsi:type="n2:Array"> |
| | 4531 | <item>DNA, Complementary</item> |
| | 4532 | <item>Expressed Sequence Tags</item> |
| | 4533 | <item>Genomics</item> |
| | 4534 | <item>Software</item> |
| | 4535 | </mesh_term_list> |
| | 4536 | <title xsi:type="xsd:string">E2G - Welcome</title> |
| | 4537 | <rank xsi:type="xsd:int">81</rank> |
| | 4538 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4539 | xsi:type="n2:Array"> |
| | 4540 | <item>15215398</item> |
| | 4541 | </pmid_list> |
| | 4542 | <snippet xsi:type="xsd:string">...efficiently mapping large EST and cDNA sets to <strong>genomic</strong> sequences . e2g is a web-based server which...expressed sequence tag ( EST ) and cDNA datasets to <strong>genomic</strong> DNA . It significantly extends the volume of data...efficient sequence comparison . The user can upload a <strong>genomic</strong> DNA sequence of interest and rapidly compare this...</snippet> |
| | 4543 | <url xsi:type="xsd:string">http://bibiserv.techfak.uni-bielefeld.de/e2g/</url> |
| | 4544 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4545 | xsi:type="n2:Array"> |
| | 4546 | <item> |
| | 4547 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4548 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4549 | </item> |
| | 4550 | <item> |
| | 4551 | <name xsi:type="xsd:string">Scirus</name> |
| | 4552 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&ds=jnl&g=s&t=all</url> |
| | 4553 | </item> |
| | 4554 | <item> |
| | 4555 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4556 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4557 | </item> |
| | 4558 | <item> |
| | 4559 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4560 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fe2g%2F&btnG=Search</url> |
| | 4561 | </item> |
| | 4562 | </papers> |
| | 4563 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4564 | </item> |
| | 4565 | <item> |
| | 4566 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4567 | xsi:type="n2:Array"> |
| | 4568 | <item> |
| | 4569 | <name xsi:type="xsd:string">Google</name> |
| | 4570 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&btnG=Google+Search</url> |
| | 4571 | </item> |
| | 4572 | <item> |
| | 4573 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4574 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&kgs=0&kls=1</url> |
| | 4575 | </item> |
| | 4576 | </pages> |
| | 4577 | <id xsi:type="xsd:int">3648</id> |
| | 4578 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4579 | <mesh_term_list n2:arrayType="xsd:string[12]" |
| | 4580 | xsi:type="n2:Array"> |
| | 4581 | <item>Base Sequence</item> |
| | 4582 | <item>Computational Biology</item> |
| | 4583 | <item>Database Management Systems</item> |
| | 4584 | <item>Databases, Factual</item> |
| | 4585 | <item>Databases, Nucleic Acid</item> |
| | 4586 | <item>Genome, Protozoan</item> |
| | 4587 | <item>Information Storage and Retrieval</item> |
| | 4588 | <item>Leishmania braziliensis</item> |
| | 4589 | <item>Nucleotides</item> |
| | 4590 | <item>Programming Languages</item> |
| | 4591 | <item>Sequence Analysis</item> |
| | 4592 | <item>Sequence Analysis, DNA</item> |
| | 4593 | </mesh_term_list> |
| | 4594 | <title xsi:type="xsd:string">The EMBL Nucleotide Sequence Database</title> |
| | 4595 | <rank xsi:type="xsd:int">82</rank> |
| | 4596 | <pmid_list n2:arrayType="xsd:string[8]" |
| | 4597 | xsi:type="n2:Array"> |
| | 4598 | <item>9399791</item> |
| | 4599 | <item>14681351</item> |
| | 4600 | <item>11125039</item> |
| | 4601 | <item>9847133</item> |
| | 4602 | <item>11752244</item> |
| | 4603 | <item>15279954</item> |
| | 4604 | <item>12176844</item> |
| | 4605 | <item>12519939</item> |
| | 4606 | </pmid_list> |
| | 4607 | <snippet xsi:type="xsd:string">A survey of Leishmania braziliensis <strong>genome</strong> by shotgun sequencing . We have carried out a survey of the genome of...braziliensis genome by shotgun sequencing . We have carried out a survey of the <strong>genome</strong> of Leishmania ( Viannia ) braziliensis by shotgun sequencing . Approximately 15% of the haploid genome...genome of Leishmania ( Viannia ) braziliensis by shotgun sequencing . Approximately 15% of the haploid <strong>genome</strong> of the parasite ( 5.15 Mb of genomic sequence ) was obtained . A large...</snippet> |
| | 4608 | <url xsi:type="xsd:string">http://www.ebi.ac.uk/embl/</url> |
| | 4609 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4610 | xsi:type="n2:Array"> |
| | 4611 | <item> |
| | 4612 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4613 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4614 | </item> |
| | 4615 | <item> |
| | 4616 | <name xsi:type="xsd:string">Scirus</name> |
| | 4617 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&ds=jnl&g=s&t=all</url> |
| | 4618 | </item> |
| | 4619 | <item> |
| | 4620 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4621 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4622 | </item> |
| | 4623 | <item> |
| | 4624 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4625 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ebi.ac.uk%2Fembl%2F&btnG=Search</url> |
| | 4626 | </item> |
| | 4627 | </papers> |
| | 4628 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4629 | </item> |
| | 4630 | <item> |
| | 4631 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4632 | xsi:type="n2:Array"> |
| | 4633 | <item> |
| | 4634 | <name xsi:type="xsd:string">Google</name> |
| | 4635 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.ou.edu%2Fact.html&btnG=Google+Search</url> |
| | 4636 | </item> |
| | 4637 | <item> |
| | 4638 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4639 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.ou.edu%2Fact.html&kgs=0&kls=1</url> |
| | 4640 | </item> |
| | 4641 | </pages> |
| | 4642 | <id xsi:type="xsd:int">10722</id> |
| | 4643 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4644 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 4645 | xsi:type="n2:Array"> |
| | 4646 | <item>Actinobacillus actinomycetemcomitans</item> |
| | 4647 | <item>Adhesins, Bacterial</item> |
| | 4648 | <item>Bacterial Adhesion</item> |
| | 4649 | <item>DNA Transposable Elements</item> |
| | 4650 | <item>Periodontitis, Juvenile</item> |
| | 4651 | </mesh_term_list> |
| | 4652 | <title xsi:type="xsd:string">Actinobacillus actinomycetemcomitans Genome Sequencing</title> |
| | 4653 | <rank xsi:type="xsd:int">83</rank> |
| | 4654 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 4655 | xsi:type="n2:Array"> |
| | 4656 | <item>12704108</item> |
| | 4657 | <item>10931902</item> |
| | 4658 | <item>16879336</item> |
| | 4659 | </pmid_list> |
| | 4660 | <snippet xsi:type="xsd:string">...in adolescents . Availability of the DNA sequence of the complete <strong>genome</strong> of A.actinomycetemcomitans strain HK1651 , a representative strain of the...HK1651 , a representative strain of the JP2 clone ( http : //www . <strong>genome</strong> . ou . edu/act . html ) , has provided new possibilities in basic...Pocket Exotoxins Base Sequence Bacterial Adhesion Maxillary Diseases Actinobacillus Infections <strong>Genome</strong>, Bacterial Evolution, Molecular Microscopy, Fluorescence Lactoferrin Bacterial Adhesion ... Transposable Elements Adhesins, Bacterial Periodontitis, Juvenile Actinobacillus actinomycetemcomitans Periodontitis Gram-Negative Facultatively Anaerobic Rods Bacterial Proteins Bacterial Physiology Antigens Gram-Negative Bacteria Pasteurellaceae Molecular Structure <strong>Genome</strong> Components Bacterial Outer Membrane Proteins Actinobacillus Proteobacteria Repetitive Sequences, Nucleic Acid <strong>Genome</strong> Antigens, Bacterial DNA Microbiologic Phenomena Interspersed Repetitive Sequences Membrane Proteins...</snippet> |
| | 4661 | <url xsi:type="xsd:string">http://www.genome.ou.edu/act.html</url> |
| | 4662 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4663 | xsi:type="n2:Array"> |
| | 4664 | <item> |
| | 4665 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4666 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.ou.edu%2Fact.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4667 | </item> |
| | 4668 | <item> |
| | 4669 | <name xsi:type="xsd:string">Scirus</name> |
| | 4670 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.ou.edu%2Fact.html&ds=jnl&g=s&t=all</url> |
| | 4671 | </item> |
| | 4672 | <item> |
| | 4673 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4674 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.ou.edu%2Fact.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4675 | </item> |
| | 4676 | <item> |
| | 4677 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4678 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genome.ou.edu%2Fact.html&btnG=Search</url> |
| | 4679 | </item> |
| | 4680 | </papers> |
| | 4681 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4682 | </item> |
| | 4683 | <item> |
| | 4684 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4685 | xsi:type="n2:Array"> |
| | 4686 | <item> |
| | 4687 | <name xsi:type="xsd:string">Google</name> |
| | 4688 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.gov%2Fhomeodomain&btnG=Google+Search</url> |
| | 4689 | </item> |
| | 4690 | <item> |
| | 4691 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4692 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.gov%2Fhomeodomain&kgs=0&kls=1</url> |
| | 4693 | </item> |
| | 4694 | </pages> |
| | 4695 | <id xsi:type="xsd:int">2505</id> |
| | 4696 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4697 | <mesh_term_list n2:arrayType="xsd:string[3]" |
| | 4698 | xsi:type="n2:Array"> |
| | 4699 | <item>DNA</item> |
| | 4700 | <item>Databases, Factual</item> |
| | 4701 | <item>Homeodomain Proteins</item> |
| | 4702 | </mesh_term_list> |
| | 4703 | <title xsi:type="xsd:string">genome.gov | 404 - Not Found</title> |
| | 4704 | <rank xsi:type="xsd:int">84</rank> |
| | 4705 | <pmid_list n2:arrayType="xsd:string[3]" |
| | 4706 | xsi:type="n2:Array"> |
| | 4707 | <item>9847220</item> |
| | 4708 | <item>10592263</item> |
| | 4709 | <item>11125116</item> |
| | 4710 | </pmid_list> |
| | 4711 | <snippet xsi:type="xsd:string">...Resource : sequences , structures , DNA binding sites and <strong>genomic</strong> information . The Homeodomain Resource is an annotated...S Banerjee-Basu Amino Acid Sequence Humans <strong>Genomics</strong> Protein Conformation Terminology X-Ray Diffraction Information Services Mutation Chromosome Mapping Molecular Sequence Data <strong>Genome</strong> Crystallization DNA Protein Binding Information Storage and Retrieval DNA-Binding Proteins Internet Multigene Family Base Sequence Nuclear Magnetic Resonance, Biomolecular Genetic Diseases, Inborn Drosophila melanogaster Binding Sites Animals Homeodomain Proteins Databases, Factual ... Homeodomain Proteins Databases, Factual Proteins Medical Informatics...</snippet> |
| | 4712 | <url xsi:type="xsd:string">http://www.genome.gov/homeodomain</url> |
| | 4713 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4714 | xsi:type="n2:Array"> |
| | 4715 | <item> |
| | 4716 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4717 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.gov%2Fhomeodomain&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4718 | </item> |
| | 4719 | <item> |
| | 4720 | <name xsi:type="xsd:string">Scirus</name> |
| | 4721 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.gov%2Fhomeodomain&ds=jnl&g=s&t=all</url> |
| | 4722 | </item> |
| | 4723 | <item> |
| | 4724 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4725 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.gov%2Fhomeodomain&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4726 | </item> |
| | 4727 | <item> |
| | 4728 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4729 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genome.gov%2Fhomeodomain&btnG=Search</url> |
| | 4730 | </item> |
| | 4731 | </papers> |
| | 4732 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4733 | </item> |
| | 4734 | <item> |
| | 4735 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4736 | xsi:type="n2:Array"> |
| | 4737 | <item> |
| | 4738 | <name xsi:type="xsd:string">Google</name> |
| | 4739 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&btnG=Google+Search</url> |
| | 4740 | </item> |
| | 4741 | <item> |
| | 4742 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4743 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&kgs=0&kls=1</url> |
| | 4744 | </item> |
| | 4745 | </pages> |
| | 4746 | <id xsi:type="xsd:int">1047</id> |
| | 4747 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4748 | <mesh_term_list n2:arrayType="xsd:string[10]" |
| | 4749 | xsi:type="n2:Array"> |
| | 4750 | <item>Algorithms</item> |
| | 4751 | <item>Chromosome Mapping</item> |
| | 4752 | <item>DNA Mutational Analysis</item> |
| | 4753 | <item>Exons</item> |
| | 4754 | <item>Genomics</item> |
| | 4755 | <item>Sequence Alignment</item> |
| | 4756 | <item>Sequence Analysis</item> |
| | 4757 | <item>Sequence Analysis, DNA</item> |
| | 4758 | <item>Sequence Analysis, Protein</item> |
| | 4759 | <item>Software</item> |
| | 4760 | </mesh_term_list> |
| | 4761 | <title xsi:type="xsd:string">Dialign 2.2.1 - Welcome</title> |
| | 4762 | <rank xsi:type="xsd:int">85</rank> |
| | 4763 | <pmid_list n2:arrayType="xsd:string[6]" |
| | 4764 | xsi:type="n2:Array"> |
| | 4765 | <item>12542405</item> |
| | 4766 | <item>15838131</item> |
| | 4767 | <item>10222408</item> |
| | 4768 | <item>12075013</item> |
| | 4769 | <item>15215344</item> |
| | 4770 | <item>11120687</item> |
| | 4771 | </pmid_list> |
| | 4772 | <snippet xsi:type="xsd:string">Fast and sensitive alignment of large <strong>genomic</strong> sequences . Comparative analysis of syntenic genome sequences can be used to...and sensitive alignment of large genomic sequences . Comparative analysis of syntenic <strong>genome</strong> sequences can be used to identify functional sites such as exons...number of computer programs have been developed for alignment of large <strong>genomic</strong> sequences . Some of these programs are extremely fast but often time...</snippet> |
| | 4773 | <url xsi:type="xsd:string">http://bibiserv.techfak.uni-bielefeld.de/dialign/</url> |
| | 4774 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4775 | xsi:type="n2:Array"> |
| | 4776 | <item> |
| | 4777 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4778 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4779 | </item> |
| | 4780 | <item> |
| | 4781 | <name xsi:type="xsd:string">Scirus</name> |
| | 4782 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&ds=jnl&g=s&t=all</url> |
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| | 4784 | <item> |
| | 4785 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4786 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4787 | </item> |
| | 4788 | <item> |
| | 4789 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4790 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbibiserv.techfak.uni-bielefeld.de%2Fdialign%2F&btnG=Search</url> |
| | 4791 | </item> |
| | 4792 | </papers> |
| | 4793 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4794 | </item> |
| | 4795 | <item> |
| | 4796 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4797 | xsi:type="n2:Array"> |
| | 4798 | <item> |
| | 4799 | <name xsi:type="xsd:string">Google</name> |
| | 4800 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&btnG=Google+Search</url> |
| | 4801 | </item> |
| | 4802 | <item> |
| | 4803 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4804 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&kgs=0&kls=1</url> |
| | 4805 | </item> |
| | 4806 | </pages> |
| | 4807 | <id xsi:type="xsd:int">11186</id> |
| | 4808 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4809 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 4810 | xsi:type="n2:Array"> |
| | 4811 | <item>Chromosome Mapping</item> |
| | 4812 | <item>Gene Expression Profiling</item> |
| | 4813 | <item>In Situ Hybridization</item> |
| | 4814 | <item>Oligonucleotide Array Sequence Analysis</item> |
| | 4815 | <item>Polymorphism, Single Nucleotide</item> |
| | 4816 | <item>Sequence Analysis, DNA</item> |
| | 4817 | <item>Software</item> |
| | 4818 | </mesh_term_list> |
| | 4819 | <title xsi:type="xsd:string">ArrayFusion - a web application for multi-dimensional analysis of CGH, SNP and microarray data</title> |
| | 4820 | <rank xsi:type="xsd:int">86</rank> |
| | 4821 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4822 | xsi:type="n2:Array"> |
| | 4823 | <item>16935928</item> |
| | 4824 | </pmid_list> |
| | 4825 | <snippet xsi:type="xsd:string">...standard formats which can be visualized in <strong>genome</strong> browsers ( Affymetrix Integrated <strong>Genome</strong> Browser and GBrowse in the HapMap Project ) . Converted files can then be imported simultaneously into a single <strong>genome</strong> browser to benefit a collective interpretation between...standard formats which can be visualized in <strong>genome</strong> browsers (Affymetrix Integrated <strong>Genome</strong> Browser and GBrowse in the HapMap Project). Converted files can then be imported simultaneously into a single <strong>genome</strong> browser to benefit the collective interpretation between...</snippet> |
| | 4826 | <url xsi:type="xsd:string">http://microarray.ym.edu.tw:8080/tools/module/arrayfusion/index.jsp?mode=home</url> |
| | 4827 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4828 | xsi:type="n2:Array"> |
| | 4829 | <item> |
| | 4830 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4831 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4832 | </item> |
| | 4833 | <item> |
| | 4834 | <name xsi:type="xsd:string">Scirus</name> |
| | 4835 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&ds=jnl&g=s&t=all</url> |
| | 4836 | </item> |
| | 4837 | <item> |
| | 4838 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4839 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4840 | </item> |
| | 4841 | <item> |
| | 4842 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4843 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fmicroarray.ym.edu.tw%3A8080%2Ftools%2Fmodule%2Farrayfusion%2Findex.jsp%3Fmode%3Dhome&btnG=Search</url> |
| | 4844 | </item> |
| | 4845 | </papers> |
| | 4846 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4847 | </item> |
| | 4848 | <item> |
| | 4849 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4850 | xsi:type="n2:Array"> |
| | 4851 | <item> |
| | 4852 | <name xsi:type="xsd:string">Google</name> |
| | 4853 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&btnG=Google+Search</url> |
| | 4854 | </item> |
| | 4855 | <item> |
| | 4856 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4857 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&kgs=0&kls=1</url> |
| | 4858 | </item> |
| | 4859 | </pages> |
| | 4860 | <id xsi:type="xsd:int">9924</id> |
| | 4861 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4862 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 4863 | xsi:type="n2:Array"> |
| | 4864 | <item>Databases, Nucleic Acid</item> |
| | 4865 | <item>Introns</item> |
| | 4866 | <item>RNA Splice Sites</item> |
| | 4867 | <item>RNA, Small Nuclear</item> |
| | 4868 | <item>Spliceosomes</item> |
| | 4869 | </mesh_term_list> |
| | 4870 | <title xsi:type="xsd:string">U12DB</title> |
| | 4871 | <rank xsi:type="xsd:int">87</rank> |
| | 4872 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4873 | xsi:type="n2:Array"> |
| | 4874 | <item>17082203</item> |
| | 4875 | </pmid_list> |
| | 4876 | <snippet xsi:type="xsd:string">...dependent spliceosome and are present in the <strong>genomes</strong> of many higher eukaryotic lineages including plants...type splice sites are under-represented in <strong>genome</strong> annotations . Such under-representation compounds the already difficult problem of determining gene structures . It also impedes attempts to study these introns <strong>genome</strong>-wide or phylum-wide . The resource described...</snippet> |
| | 4877 | <url xsi:type="xsd:string">http://genome.imim.es/cgi-bin/u12db/u12db.cgi</url> |
| | 4878 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4879 | xsi:type="n2:Array"> |
| | 4880 | <item> |
| | 4881 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4882 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4883 | </item> |
| | 4884 | <item> |
| | 4885 | <name xsi:type="xsd:string">Scirus</name> |
| | 4886 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&ds=jnl&g=s&t=all</url> |
| | 4887 | </item> |
| | 4888 | <item> |
| | 4889 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4890 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4891 | </item> |
| | 4892 | <item> |
| | 4893 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4894 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fgenome.imim.es%2Fcgi-bin%2Fu12db%2Fu12db.cgi&btnG=Search</url> |
| | 4895 | </item> |
| | 4896 | </papers> |
| | 4897 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4898 | </item> |
| | 4899 | <item> |
| | 4900 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4901 | xsi:type="n2:Array"> |
| | 4902 | <item> |
| | 4903 | <name xsi:type="xsd:string">Google</name> |
| | 4904 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&btnG=Google+Search</url> |
| | 4905 | </item> |
| | 4906 | <item> |
| | 4907 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4908 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&kgs=0&kls=1</url> |
| | 4909 | </item> |
| | 4910 | </pages> |
| | 4911 | <id xsi:type="xsd:int">9663</id> |
| | 4912 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4913 | <mesh_term_list n2:arrayType="xsd:string[3]" |
| | 4914 | xsi:type="n2:Array"> |
| | 4915 | <item>DNA, Mitochondrial</item> |
| | 4916 | <item>Databases, Nucleic Acid</item> |
| | 4917 | <item>Genome</item> |
| | 4918 | </mesh_term_list> |
| | 4919 | <title xsi:type="xsd:string">OGRe. Database</title> |
| | 4920 | <rank xsi:type="xsd:int">88</rank> |
| | 4921 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4922 | xsi:type="n2:Array"> |
| | 4923 | <item>12519982</item> |
| | 4924 | </pmid_list> |
| | 4925 | <snippet xsi:type="xsd:string">...relational database for comparative analysis of mitochondrial <strong>genomes</strong> . Organellar <strong>Genome</strong> Retrieval ( OGRe ) is a relational database of complete mitochondrial <strong>genome</strong> sequences for over 250 Metazoan species . OGRe...resource for the comparative analysis of mitochondrial <strong>genomes</strong> at several levels . At the sequence level...between organisms . At the level of whole <strong>genomes</strong> , OGRe provides several ways of visualizing information...</snippet> |
| | 4926 | <url xsi:type="xsd:string">http://drake.physics.mcmaster.ca/ogre/</url> |
| | 4927 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4928 | xsi:type="n2:Array"> |
| | 4929 | <item> |
| | 4930 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4931 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4932 | </item> |
| | 4933 | <item> |
| | 4934 | <name xsi:type="xsd:string">Scirus</name> |
| | 4935 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&ds=jnl&g=s&t=all</url> |
| | 4936 | </item> |
| | 4937 | <item> |
| | 4938 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4939 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4940 | </item> |
| | 4941 | <item> |
| | 4942 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4943 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fdrake.physics.mcmaster.ca%2Fogre%2F&btnG=Search</url> |
| | 4944 | </item> |
| | 4945 | </papers> |
| | 4946 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4947 | </item> |
| | 4948 | <item> |
| | 4949 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 4950 | xsi:type="n2:Array"> |
| | 4951 | <item> |
| | 4952 | <name xsi:type="xsd:string">Google</name> |
| | 4953 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&btnG=Google+Search</url> |
| | 4954 | </item> |
| | 4955 | <item> |
| | 4956 | <name xsi:type="xsd:string">AltaVista</name> |
| | 4957 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&kgs=0&kls=1</url> |
| | 4958 | </item> |
| | 4959 | </pages> |
| | 4960 | <id xsi:type="xsd:int">10771</id> |
| | 4961 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 4962 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 4963 | xsi:type="n2:Array"> |
| | 4964 | <item>Betaproteobacteria</item> |
| | 4965 | <item>Genome, Bacterial</item> |
| | 4966 | <item>Hydrocarbons, Aromatic</item> |
| | 4967 | <item>Sequence Analysis, DNA</item> |
| | 4968 | </mesh_term_list> |
| | 4969 | <title xsi:type="xsd:string">The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1</title> |
| | 4970 | <rank xsi:type="xsd:int">89</rank> |
| | 4971 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 4972 | xsi:type="n2:Array"> |
| | 4973 | <item>15551059</item> |
| | 4974 | </pmid_list> |
| | 4975 | <snippet xsi:type="xsd:string">The <strong>genome</strong> sequence of an anaerobic aromatic-degrading denitrifying...process . Here we present the first complete <strong>genome</strong> of a metabolically versatile representative , strain EbN1...than 200 genes for transposases ) suggest high <strong>genome</strong> plasticity and extensive lateral gene transfer during...at the Web page http : //www . micro-<strong>genomes</strong> . mpg . de/ebn1/ . http://www.micro-<strong>genomes</strong>.mpg.de/ebn1/ text/html The <strong>genome</strong> sequence of an anaerobic aromatic-degrading denitrifying...</snippet> |
| | 4976 | <url xsi:type="xsd:string">http://www.micro-genomes.mpg.de/ebn1/</url> |
| | 4977 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 4978 | xsi:type="n2:Array"> |
| | 4979 | <item> |
| | 4980 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 4981 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 4982 | </item> |
| | 4983 | <item> |
| | 4984 | <name xsi:type="xsd:string">Scirus</name> |
| | 4985 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&ds=jnl&g=s&t=all</url> |
| | 4986 | </item> |
| | 4987 | <item> |
| | 4988 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 4989 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 4990 | </item> |
| | 4991 | <item> |
| | 4992 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 4993 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.micro-genomes.mpg.de%2Febn1%2F&btnG=Search</url> |
| | 4994 | </item> |
| | 4995 | </papers> |
| | 4996 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 4997 | </item> |
| | 4998 | <item> |
| | 4999 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5000 | xsi:type="n2:Array"> |
| | 5001 | <item> |
| | 5002 | <name xsi:type="xsd:string">Google</name> |
| | 5003 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&btnG=Google+Search</url> |
| | 5004 | </item> |
| | 5005 | <item> |
| | 5006 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5007 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&kgs=0&kls=1</url> |
| | 5008 | </item> |
| | 5009 | </pages> |
| | 5010 | <id xsi:type="xsd:int">12023</id> |
| | 5011 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5012 | <mesh_term_list n2:arrayType="xsd:string[2]" |
| | 5013 | xsi:type="n2:Array"> |
| | 5014 | <item>Cytomegalovirus</item> |
| | 5015 | <item>Genome, Viral</item> |
| | 5016 | </mesh_term_list> |
| | 5017 | <title xsi:type="xsd:string">Human Cytomegalovirus (HHV5) Annotation</title> |
| | 5018 | <rank xsi:type="xsd:int">90</rank> |
| | 5019 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5020 | xsi:type="n2:Array"> |
| | 5021 | <item>12634390</item> |
| | 5022 | </pmid_list> |
| | 5023 | <snippet xsi:type="xsd:string">...pattern-based analysis of the human cytomegalovirus <strong>genome</strong> . More than 200 open reading frames ( ORFs ) from the human cytomegalovirus <strong>genome</strong> have been reported as potentially coding for...gene family definitions . Our analysis of the <strong>genome</strong> shows that many of the coded proteins...in neighboring regions of the human cytomegalovirus <strong>genome</strong> . All of the results of the present...</snippet> |
| | 5024 | <url xsi:type="xsd:string">http://cbcsrv.watson.ibm.com/virus/</url> |
| | 5025 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5026 | xsi:type="n2:Array"> |
| | 5027 | <item> |
| | 5028 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5029 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5030 | </item> |
| | 5031 | <item> |
| | 5032 | <name xsi:type="xsd:string">Scirus</name> |
| | 5033 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&ds=jnl&g=s&t=all</url> |
| | 5034 | </item> |
| | 5035 | <item> |
| | 5036 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5037 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5038 | </item> |
| | 5039 | <item> |
| | 5040 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5041 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fcbcsrv.watson.ibm.com%2Fvirus%2F&btnG=Search</url> |
| | 5042 | </item> |
| | 5043 | </papers> |
| | 5044 | <average_stars xsi:type="xsd:double">+0</average_stars> |
| | 5045 | </item> |
| | 5046 | <item> |
| | 5047 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5048 | xsi:type="n2:Array"> |
| | 5049 | <item> |
| | 5050 | <name xsi:type="xsd:string">Google</name> |
| | 5051 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&btnG=Google+Search</url> |
| | 5052 | </item> |
| | 5053 | <item> |
| | 5054 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5055 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&kgs=0&kls=1</url> |
| | 5056 | </item> |
| | 5057 | </pages> |
| | 5058 | <id xsi:type="xsd:int">11739</id> |
| | 5059 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5060 | <mesh_term_list n2:arrayType="xsd:string[11]" |
| | 5061 | xsi:type="n2:Array"> |
| | 5062 | <item>Arabidopsis</item> |
| | 5063 | <item>Caenorhabditis elegans</item> |
| | 5064 | <item>Chromatography</item> |
| | 5065 | <item>Chromosome Mapping</item> |
| | 5066 | <item>Expressed Sequence Tags</item> |
| | 5067 | <item>Genome</item> |
| | 5068 | <item>Protein Biosynthesis</item> |
| | 5069 | <item>Sequence Alignment</item> |
| | 5070 | <item>Sequence Analysis, DNA</item> |
| | 5071 | <item>Software</item> |
| | 5072 | <item>User-Computer Interface</item> |
| | 5073 | </mesh_term_list> |
| | 5074 | <title xsi:type="xsd:string">PartiGene</title> |
| | 5075 | <rank xsi:type="xsd:int">91</rank> |
| | 5076 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 5077 | xsi:type="n2:Array"> |
| | 5078 | <item href="#id29324130"></item> |
| | 5079 | <item>15571632</item> |
| | 5080 | </pmid_list> |
| | 5081 | <snippet xsi:type="xsd:string">prot4EST : translating expressed sequence tags from neglected <strong>genomes</strong> . BACKGROUND : The <strong>genomes</strong> of an increasing number of species are...Sequence Tags Protein Biosynthesis Databases, Genetic Spirurida <strong>Genome</strong> Base Composition <strong>Genome</strong>, Plant DNA, Plant Software Databases, Nucleic Acid <strong>Genome</strong>, Bacterial Animals Protein Biosynthesis <strong>Genome</strong> Sequence Alignment Chromosome Mapping Software Arabidopsis Chromatography Sequence Analysis, ... User-Computer Interface Expressed Sequence Tags Caenorhabditis elegans Gene Expression Genes Brassicaceae Gene Components Metabolism Nematoda Helminths Secernentea <strong>Genome</strong> Components Plant Families and Groups Caenorhabditis Peptide...</snippet> |
| | 5082 | <url xsi:type="xsd:string">http://xyala.cap.ed.ac.uk/PartiGene/</url> |
| | 5083 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5084 | xsi:type="n2:Array"> |
| | 5085 | <item> |
| | 5086 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5087 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5088 | </item> |
| | 5089 | <item> |
| | 5090 | <name xsi:type="xsd:string">Scirus</name> |
| | 5091 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&ds=jnl&g=s&t=all</url> |
| | 5092 | </item> |
| | 5093 | <item> |
| | 5094 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5095 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5096 | </item> |
| | 5097 | <item> |
| | 5098 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5099 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fxyala.cap.ed.ac.uk%2FPartiGene%2F&btnG=Search</url> |
| | 5100 | </item> |
| | 5101 | </papers> |
| | 5102 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5103 | </item> |
| | 5104 | <item> |
| | 5105 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5106 | xsi:type="n2:Array"> |
| | 5107 | <item> |
| | 5108 | <name xsi:type="xsd:string">Google</name> |
| | 5109 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&btnG=Google+Search</url> |
| | 5110 | </item> |
| | 5111 | <item> |
| | 5112 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5113 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&kgs=0&kls=1</url> |
| | 5114 | </item> |
| | 5115 | </pages> |
| | 5116 | <id xsi:type="xsd:int">10450</id> |
| | 5117 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5118 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 5119 | xsi:type="n2:Array"> |
| | 5120 | <item>DNA, Bacterial</item> |
| | 5121 | <item>DNA, Superhelical</item> |
| | 5122 | <item>Databases, Nucleic Acid</item> |
| | 5123 | <item>Genome, Archaeal</item> |
| | 5124 | <item>Genome, Bacterial</item> |
| | 5125 | </mesh_term_list> |
| | 5126 | <title xsi:type="xsd:string">Craig J Benham</title> |
| | 5127 | <rank xsi:type="xsd:int">92</rank> |
| | 5128 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5129 | xsi:type="n2:Array"> |
| | 5130 | <item>16381890</item> |
| | 5131 | </pmid_list> |
| | 5132 | <snippet xsi:type="xsd:string">...duplex destabilization ( SIDD ) profiles of complete microbial <strong>genomes</strong> . Prokaryotic <strong>genomic</strong> DNA is generally negatively supercoiled in-vivo...of the SIDD profiles of 42 bacterial <strong>genomes</strong> chosen for their diversity confirms this pattern...sites have been used to identify potential <strong>genomic</strong> regulatory regions , and suggest both possible regulatory...analyses of completely sequenced prokaryotic and archaeal <strong>genomes</strong> , together with their annotations . SIDDBASE is available...</snippet> |
| | 5133 | <url xsi:type="xsd:string">http://www.genomecenter.ucdavis.edu/benham/sidd_database/</url> |
| | 5134 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5135 | xsi:type="n2:Array"> |
| | 5136 | <item> |
| | 5137 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5138 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5139 | </item> |
| | 5140 | <item> |
| | 5141 | <name xsi:type="xsd:string">Scirus</name> |
| | 5142 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&ds=jnl&g=s&t=all</url> |
| | 5143 | </item> |
| | 5144 | <item> |
| | 5145 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5146 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5147 | </item> |
| | 5148 | <item> |
| | 5149 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5150 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.genomecenter.ucdavis.edu%2Fbenham%2Fsidd_database%2F&btnG=Search</url> |
| | 5151 | </item> |
| | 5152 | </papers> |
| | 5153 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5154 | </item> |
| | 5155 | <item> |
| | 5156 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5157 | xsi:type="n2:Array"> |
| | 5158 | <item> |
| | 5159 | <name xsi:type="xsd:string">Google</name> |
| | 5160 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&btnG=Google+Search</url> |
| | 5161 | </item> |
| | 5162 | <item> |
| | 5163 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5164 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&kgs=0&kls=1</url> |
| | 5165 | </item> |
| | 5166 | </pages> |
| | 5167 | <id xsi:type="xsd:int">1389</id> |
| | 5168 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5169 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 5170 | xsi:type="n2:Array"> |
| | 5171 | <item>Algorithms</item> |
| | 5172 | <item>Genome</item> |
| | 5173 | <item>Models, Genetic</item> |
| | 5174 | <item>Repetitive Sequences, Nucleic Acid</item> |
| | 5175 | <item>Sequence Analysis, DNA</item> |
| | 5176 | </mesh_term_list> |
| | 5177 | <title xsi:type="xsd:string">A library for computational biology programs</title> |
| | 5178 | <rank xsi:type="xsd:int">93</rank> |
| | 5179 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5180 | xsi:type="n2:Array"> |
| | 5181 | <item>12050064</item> |
| | 5182 | </pmid_list> |
| | 5183 | <snippet xsi:type="xsd:string">Sequence complexity profiles of prokaryotic <strong>genomic</strong> sequences : a fast algorithm for calculating linguistic complexity . MOTIVATION : One of the major features of <strong>genomic</strong> DNA sequences , distinguishing them from texts in most...their high repetitiveness . Variation in the repetitiveness of <strong>genomic</strong> texts reflects the presence and density of different...signal . Linguistic complexity corresponds to repetitiveness of a <strong>genomic</strong> text , and potential regulatory sites may be discovered...</snippet> |
| | 5184 | <url xsi:type="xsd:string">http://csweb.haifa.ac.il/library/#complex</url> |
| | 5185 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5186 | xsi:type="n2:Array"> |
| | 5187 | <item> |
| | 5188 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5189 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5190 | </item> |
| | 5191 | <item> |
| | 5192 | <name xsi:type="xsd:string">Scirus</name> |
| | 5193 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&ds=jnl&g=s&t=all</url> |
| | 5194 | </item> |
| | 5195 | <item> |
| | 5196 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5197 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5198 | </item> |
| | 5199 | <item> |
| | 5200 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5201 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fcsweb.haifa.ac.il%2Flibrary%2F%23complex&btnG=Search</url> |
| | 5202 | </item> |
| | 5203 | </papers> |
| | 5204 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5205 | </item> |
| | 5206 | <item> |
| | 5207 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5208 | xsi:type="n2:Array"> |
| | 5209 | <item> |
| | 5210 | <name xsi:type="xsd:string">Google</name> |
| | 5211 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.geneontology.org%2F&btnG=Google+Search</url> |
| | 5212 | </item> |
| | 5213 | <item> |
| | 5214 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5215 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.geneontology.org%2F&kgs=0&kls=1</url> |
| | 5216 | </item> |
| | 5217 | </pages> |
| | 5218 | <id xsi:type="xsd:int">10262</id> |
| | 5219 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5220 | <mesh_term_list n2:arrayType="xsd:string[30]" |
| | 5221 | xsi:type="n2:Array"> |
| | 5222 | <item>Bees</item> |
| | 5223 | <item>Computational Biology</item> |
| | 5224 | <item>Conserved Sequence</item> |
| | 5225 | <item>DNA Transposable Elements</item> |
| | 5226 | <item>Database Management Systems</item> |
| | 5227 | <item>Databases, Factual</item> |
| | 5228 | <item>Databases, Genetic</item> |
| | 5229 | <item>Databases, Protein</item> |
| | 5230 | <item>Documentation</item> |
| | 5231 | <item>Drosophila melanogaster</item> |
| | 5232 | <item>Genes</item> |
| | 5233 | <item>Genes, Fungal</item> |
| | 5234 | <item>Genes, Insect</item> |
| | 5235 | <item>Genes, Plant</item> |
| | 5236 | <item>Genetics</item> |
| | 5237 | <item>Genome, Fungal</item> |
| | 5238 | <item>Genome, Plant</item> |
| | 5239 | <item>Immunologic Techniques</item> |
| | 5240 | <item>Information Storage and Retrieval</item> |
| | 5241 | <item>Luminescent Proteins</item> |
| | 5242 | <item>Natural Language Processing</item> |
| | 5243 | <item>Proteome</item> |
| | 5244 | <item>Recombinant Fusion Proteins</item> |
| | 5245 | <item>Saccharomyces cerevisiae</item> |
| | 5246 | <item>Saccharomyces cerevisiae Proteins</item> |
| | 5247 | <item>Semantics</item> |
| | 5248 | <item>Sex Determination (Genetics)</item> |
| | 5249 | <item>Systems Biology</item> |
| | 5250 | <item>Terminology</item> |
| | 5251 | <item>Vocabulary, Controlled</item> |
| | 5252 | </mesh_term_list> |
| | 5253 | <title xsi:type="xsd:string">the Gene Ontology</title> |
| | 5254 | <rank xsi:type="xsd:int">94</rank> |
| | 5255 | <pmid_list n2:arrayType="xsd:string[10]" |
| | 5256 | xsi:type="n2:Array"> |
| | 5257 | <item>16755507</item> |
| | 5258 | <item>17267433</item> |
| | 5259 | <item>12538245</item> |
| | 5260 | <item href="#id29388890"></item> |
| | 5261 | <item>14681407</item> |
| | 5262 | <item>11752257</item> |
| | 5263 | <item>16010001</item> |
| | 5264 | <item>16381878</item> |
| | 5265 | <item>17344234</item> |
| | 5266 | <item>11483584</item> |
| | 5267 | </pmid_list> |
| | 5268 | <snippet xsi:type="xsd:string">...algorithm to measure the functional similarities of genes in pathways retrieved from the saccharomyces <strong>genome</strong> database ( SGD ) , and the outcomes of clustering these genes based on the similarity values...knowledge representation in gene annotation and analysis in the areas of immunology related to <strong>genomics</strong> and bioinformatics . AVAILABILITY : http : //www . geneontology . org . A comparative analysis of highly conserved sex...</snippet> |
| | 5269 | <url xsi:type="xsd:string">http://www.geneontology.org/</url> |
| | 5270 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5271 | xsi:type="n2:Array"> |
| | 5272 | <item> |
| | 5273 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5274 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.geneontology.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5275 | </item> |
| | 5276 | <item> |
| | 5277 | <name xsi:type="xsd:string">Scirus</name> |
| | 5278 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.geneontology.org%2F&ds=jnl&g=s&t=all</url> |
| | 5279 | </item> |
| | 5280 | <item> |
| | 5281 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5282 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.geneontology.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5283 | </item> |
| | 5284 | <item> |
| | 5285 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5286 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.geneontology.org%2F&btnG=Search</url> |
| | 5287 | </item> |
| | 5288 | </papers> |
| | 5289 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5290 | </item> |
| | 5291 | <item> |
| | 5292 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5293 | xsi:type="n2:Array"> |
| | 5294 | <item> |
| | 5295 | <name xsi:type="xsd:string">Google</name> |
| | 5296 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&btnG=Google+Search</url> |
| | 5297 | </item> |
| | 5298 | <item> |
| | 5299 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5300 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&kgs=0&kls=1</url> |
| | 5301 | </item> |
| | 5302 | </pages> |
| | 5303 | <id xsi:type="xsd:int">10367</id> |
| | 5304 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5305 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 5306 | xsi:type="n2:Array"> |
| | 5307 | <item>Databases, Nucleic Acid</item> |
| | 5308 | <item>Genome, Human</item> |
| | 5309 | <item>Sequence Alignment</item> |
| | 5310 | <item>Sequence Analysis, DNA</item> |
| | 5311 | <item>Trinucleotide Repeats</item> |
| | 5312 | </mesh_term_list> |
| | 5313 | <title xsi:type="xsd:string">ingenovis.com</title> |
| | 5314 | <rank xsi:type="xsd:int">95</rank> |
| | 5315 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5316 | xsi:type="n2:Array"> |
| | 5317 | <item>12651711</item> |
| | 5318 | </pmid_list> |
| | 5319 | <snippet xsi:type="xsd:string">Triplet repeats in human <strong>genome</strong> : distribution and their association with genes and other <strong>genomic</strong> regions . MOTIVATION : Simple sequence repeats ( SSRs ) or...found abundantly in many prokaryotic and eukaryotic <strong>genomes</strong> . Among SSRs , triplet repeats are of special...analyze the triplet repeats of complete human <strong>genome</strong> and to identify the genes that contain...</snippet> |
| | 5320 | <url xsi:type="xsd:string">http://www.ingenovis.com/tripletrepeats</url> |
| | 5321 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5322 | xsi:type="n2:Array"> |
| | 5323 | <item> |
| | 5324 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5325 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5326 | </item> |
| | 5327 | <item> |
| | 5328 | <name xsi:type="xsd:string">Scirus</name> |
| | 5329 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&ds=jnl&g=s&t=all</url> |
| | 5330 | </item> |
| | 5331 | <item> |
| | 5332 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5333 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5334 | </item> |
| | 5335 | <item> |
| | 5336 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5337 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.ingenovis.com%2Ftripletrepeats&btnG=Search</url> |
| | 5338 | </item> |
| | 5339 | </papers> |
| | 5340 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5341 | </item> |
| | 5342 | <item> |
| | 5343 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5344 | xsi:type="n2:Array"> |
| | 5345 | <item> |
| | 5346 | <name xsi:type="xsd:string">Google</name> |
| | 5347 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&btnG=Google+Search</url> |
| | 5348 | </item> |
| | 5349 | <item> |
| | 5350 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5351 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&kgs=0&kls=1</url> |
| | 5352 | </item> |
| | 5353 | </pages> |
| | 5354 | <id xsi:type="xsd:int">10868</id> |
| | 5355 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5356 | <mesh_term_list n2:arrayType="xsd:string[7]" |
| | 5357 | xsi:type="n2:Array"> |
| | 5358 | <item>Algorithms</item> |
| | 5359 | <item>Chromosome Mapping</item> |
| | 5360 | <item>Databases, Genetic</item> |
| | 5361 | <item>Sequence Alignment</item> |
| | 5362 | <item>Sequence Analysis, DNA</item> |
| | 5363 | <item>Software</item> |
| | 5364 | <item>User-Computer Interface</item> |
| | 5365 | </mesh_term_list> |
| | 5366 | <title xsi:type="xsd:string">OrthologID</title> |
| | 5367 | <rank xsi:type="xsd:int">96</rank> |
| | 5368 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5369 | xsi:type="n2:Array"> |
| | 5370 | <item>16410324</item> |
| | 5371 | </pmid_list> |
| | 5372 | <snippet xsi:type="xsd:string">OrthologID : automation of <strong>genome</strong>-scale ortholog identification within a parsimony framework . MOTIVATION : The determination of gene orthology is a prerequisite for mining and utilizing the rapidly increasing amount of sequence data for <strong>genome</strong>-scale phylogenetics and comparative <strong>genomic</strong> studies . Until now , most researchers use pairwise...framework has not been utilized on a <strong>genomic</strong> scale owing to the lack of efficiency...</snippet> |
| | 5373 | <url xsi:type="xsd:string">http://nypg.bio.nyu.edu/orthologid/</url> |
| | 5374 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5375 | xsi:type="n2:Array"> |
| | 5376 | <item> |
| | 5377 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5378 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5379 | </item> |
| | 5380 | <item> |
| | 5381 | <name xsi:type="xsd:string">Scirus</name> |
| | 5382 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&ds=jnl&g=s&t=all</url> |
| | 5383 | </item> |
| | 5384 | <item> |
| | 5385 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5386 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5387 | </item> |
| | 5388 | <item> |
| | 5389 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5390 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fnypg.bio.nyu.edu%2Forthologid%2F&btnG=Search</url> |
| | 5391 | </item> |
| | 5392 | </papers> |
| | 5393 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5394 | </item> |
| | 5395 | <item> |
| | 5396 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5397 | xsi:type="n2:Array"> |
| | 5398 | <item> |
| | 5399 | <name xsi:type="xsd:string">Google</name> |
| | 5400 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&btnG=Google+Search</url> |
| | 5401 | </item> |
| | 5402 | <item> |
| | 5403 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5404 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&kgs=0&kls=1</url> |
| | 5405 | </item> |
| | 5406 | </pages> |
| | 5407 | <id xsi:type="xsd:int">11586</id> |
| | 5408 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5409 | <mesh_term_list n2:arrayType="xsd:string[4]" |
| | 5410 | xsi:type="n2:Array"> |
| | 5411 | <item>Chickens</item> |
| | 5412 | <item>DNA, Complementary</item> |
| | 5413 | <item>Databases, Nucleic Acid</item> |
| | 5414 | <item>Expressed Sequence Tags</item> |
| | 5415 | </mesh_term_list> |
| | 5416 | <title xsi:type="xsd:string">Chicken genome</title> |
| | 5417 | <rank xsi:type="xsd:int">97</rank> |
| | 5418 | <pmid_list n2:arrayType="xsd:string[1]" |
| | 5419 | xsi:type="n2:Array"> |
| | 5420 | <item>17105754</item> |
| | 5421 | </pmid_list> |
| | 5422 | <snippet xsi:type="xsd:string">...Leung J Li Z Wang Y Wang Mice <strong>Genome</strong> Humans Base Sequence Computational Biology Sequence Homology, Nucleic Acid Chickens Databases, Nucleic Acid Animals Molecular Sequence Data DNA, Complementary Expressed Sequence Tags Databases, Nucleic Acid Chickens Expressed Sequence Tags ..., Complementary Birds Genes Gene Components Galliformes Molecular Probes Chordata Laboratory Chemicals Nucleic Acid Probes Medical Informatics <strong>Genome</strong> Components Vertebrates Information Systems Databases, Genetic Poultry Genome...</snippet> |
| | 5423 | <url xsi:type="xsd:string">http://bioinfo.hku.hk/chicken/</url> |
| | 5424 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5425 | xsi:type="n2:Array"> |
| | 5426 | <item> |
| | 5427 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5428 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5429 | </item> |
| | 5430 | <item> |
| | 5431 | <name xsi:type="xsd:string">Scirus</name> |
| | 5432 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&ds=jnl&g=s&t=all</url> |
| | 5433 | </item> |
| | 5434 | <item> |
| | 5435 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5436 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5437 | </item> |
| | 5438 | <item> |
| | 5439 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5440 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fbioinfo.hku.hk%2Fchicken%2F&btnG=Search</url> |
| | 5441 | </item> |
| | 5442 | </papers> |
| | 5443 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5444 | </item> |
| | 5445 | <item> |
| | 5446 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5447 | xsi:type="n2:Array"> |
| | 5448 | <item> |
| | 5449 | <name xsi:type="xsd:string">Google</name> |
| | 5450 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&btnG=Google+Search</url> |
| | 5451 | </item> |
| | 5452 | <item> |
| | 5453 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5454 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&kgs=0&kls=1</url> |
| | 5455 | </item> |
| | 5456 | </pages> |
| | 5457 | <id xsi:type="xsd:int">10083</id> |
| | 5458 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5459 | <mesh_term_list n2:arrayType="xsd:string[6]" |
| | 5460 | xsi:type="n2:Array"> |
| | 5461 | <item>Angiosperms</item> |
| | 5462 | <item>Cell Nucleus</item> |
| | 5463 | <item>DNA, Plant</item> |
| | 5464 | <item>Evolution, Molecular</item> |
| | 5465 | <item>Genome, Plant</item> |
| | 5466 | <item>Plants</item> |
| | 5467 | </mesh_term_list> |
| | 5468 | <title xsi:type="xsd:string">Royal Botanic Gardens, Kew: Plant DNA C-values database</title> |
| | 5469 | <rank xsi:type="xsd:int">98</rank> |
| | 5470 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 5471 | xsi:type="n2:Array"> |
| | 5472 | <item href="#id29874650"></item> |
| | 5473 | <item>15596468</item> |
| | 5474 | </pmid_list> |
| | 5475 | <snippet xsi:type="xsd:string">...in more than 300 angiosperms . BACKGROUND AND AIMS : <strong>Genome</strong> size ( DNA C-value ) data are key biodiversity...and colleagues have made scattered published and unpublished <strong>genome</strong> size data more widely accessible by assembling them...cval/homepage . html ) . Nevertheless , at the Second Plant <strong>Genome</strong> Size Meeting in 2003 , Bennett noted that as...</snippet> |
| | 5476 | <url xsi:type="xsd:string">http://data.kew.org/cvalues/homepage.html</url> |
| | 5477 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5478 | xsi:type="n2:Array"> |
| | 5479 | <item> |
| | 5480 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5481 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5482 | </item> |
| | 5483 | <item> |
| | 5484 | <name xsi:type="xsd:string">Scirus</name> |
| | 5485 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&ds=jnl&g=s&t=all</url> |
| | 5486 | </item> |
| | 5487 | <item> |
| | 5488 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5489 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5490 | </item> |
| | 5491 | <item> |
| | 5492 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5493 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fdata.kew.org%2Fcvalues%2Fhomepage.html&btnG=Search</url> |
| | 5494 | </item> |
| | 5495 | </papers> |
| | 5496 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5497 | </item> |
| | 5498 | <item> |
| | 5499 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5500 | xsi:type="n2:Array"> |
| | 5501 | <item> |
| | 5502 | <name xsi:type="xsd:string">Google</name> |
| | 5503 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.arabidopsis.org%2F&btnG=Google+Search</url> |
| | 5504 | </item> |
| | 5505 | <item> |
| | 5506 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5507 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.arabidopsis.org%2F&kgs=0&kls=1</url> |
| | 5508 | </item> |
| | 5509 | </pages> |
| | 5510 | <id xsi:type="xsd:int">5089</id> |
| | 5511 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5512 | <mesh_term_list n2:arrayType="xsd:string[11]" |
| | 5513 | xsi:type="n2:Array"> |
| | 5514 | <item>Arabidopsis</item> |
| | 5515 | <item>Databases</item> |
| | 5516 | <item>Databases, Factual</item> |
| | 5517 | <item>Databases, Genetic</item> |
| | 5518 | <item>Gene Expression Regulation, Plant</item> |
| | 5519 | <item>Genes, Plant</item> |
| | 5520 | <item>Genome, Plant</item> |
| | 5521 | <item>Information Systems</item> |
| | 5522 | <item>Internet</item> |
| | 5523 | <item>Trans-Activators</item> |
| | 5524 | <item>Transcription Factors</item> |
| | 5525 | </mesh_term_list> |
| | 5526 | <title xsi:type="xsd:string">TAIR - Home Page</title> |
| | 5527 | <rank xsi:type="xsd:int">99</rank> |
| | 5528 | <pmid_list n2:arrayType="xsd:string[5]" |
| | 5529 | xsi:type="n2:Array"> |
| | 5530 | <item>11125061</item> |
| | 5531 | <item>12519987</item> |
| | 5532 | <item>12820902</item> |
| | 5533 | <item>12444417</item> |
| | 5534 | <item>12805578</item> |
| | 5535 | </pmid_list> |
| | 5536 | <snippet xsi:type="xsd:string">...Proteins Databases, Factual Gene Expression Regulation, Plant Databases, Genetic Trans-Activators <strong>Genome</strong>, Plant Internet Databases Arabidopsis Transcription Factors Databases, Factual Information Systems Gene Expression Regulation, Plant Genes, Plant Viral Proteins Genes Brassicaceae Computer Communication Networks Viral Regulatory Proteins Medical Informatics <strong>Genome</strong> Components Plant Families and Groups Information Systems Gene Expression Regulation <strong>Genome</strong> Computer Systems <strong>Genome</strong>, Plant Information Storage and Retrieval ...-Binding Proteins Proteins Computing Methodologies Medical Informatics Applications Databases Transcription Factors...</snippet> |
| | 5537 | <url xsi:type="xsd:string">http://www.arabidopsis.org/</url> |
| | 5538 | <papers n2:arrayType="n1:Retrieve..Paper[4]" |
| | 5539 | xsi:type="n2:Array"> |
| | 5540 | <item> |
| | 5541 | <name xsi:type="xsd:string">BioMed Central</name> |
| | 5542 | <url xsi:type="xsd:string">http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.arabidopsis.org%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search</url> |
| | 5543 | </item> |
| | 5544 | <item> |
| | 5545 | <name xsi:type="xsd:string">Scirus</name> |
| | 5546 | <url xsi:type="xsd:string">http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.arabidopsis.org%2F&ds=jnl&g=s&t=all</url> |
| | 5547 | </item> |
| | 5548 | <item> |
| | 5549 | <name xsi:type="xsd:string">HighWire Press</name> |
| | 5550 | <url xsi:type="xsd:string">http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.arabidopsis.org%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007</url> |
| | 5551 | </item> |
| | 5552 | <item> |
| | 5553 | <name xsi:type="xsd:string">Google Scholar</name> |
| | 5554 | <url xsi:type="xsd:string">http://scholar.google.com/scholar?hl=en&lr=&q=http%3A%2F%2Fwww.arabidopsis.org%2F&btnG=Search</url> |
| | 5555 | </item> |
| | 5556 | </papers> |
| | 5557 | <average_stars xsi:type="xsd:double">+3</average_stars> |
| | 5558 | </item> |
| | 5559 | <item> |
| | 5560 | <pages n2:arrayType="n1:Retrieve..Page[2]" |
| | 5561 | xsi:type="n2:Array"> |
| | 5562 | <item> |
| | 5563 | <name xsi:type="xsd:string">Google</name> |
| | 5564 | <url xsi:type="xsd:string">http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Frarge.gsc.riken.jp%2F&btnG=Google+Search</url> |
| | 5565 | </item> |
| | 5566 | <item> |
| | 5567 | <name xsi:type="xsd:string">AltaVista</name> |
| | 5568 | <url xsi:type="xsd:string">http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Frarge.gsc.riken.jp%2F&kgs=0&kls=1</url> |
| | 5569 | </item> |
| | 5570 | </pages> |
| | 5571 | <id xsi:type="xsd:int">4945</id> |
| | 5572 | <updated_at xsi:type="xsd:dateTime">-0001-01-01T00:00:00+09:00</updated_at> |
| | 5573 | <mesh_term_list n2:arrayType="xsd:string[5]" |
| | 5574 | xsi:type="n2:Array"> |
| | 5575 | <item>Arabidopsis</item> |
| | 5576 | <item>Chromosomes, Plant</item> |
| | 5577 | <item>DNA Transposable Elements</item> |
| | 5578 | <item>Databases, Genetic</item> |
| | 5579 | <item>Genome, Plant</item> |
| | 5580 | </mesh_term_list> |
| | 5581 | <title xsi:type="xsd:string">RARGE- RIKEN Arabidopsis Genome Encyclopedia</title> |
| | 5582 | <rank xsi:type="xsd:int">100</rank> |
| | 5583 | <pmid_list n2:arrayType="xsd:string[2]" |
| | 5584 | xsi:type="n2:Array"> |
| | 5585 | <item>15840642</item> |
| | 5586 | <item>15608280</item> |
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