id summary reporter owner description type status priority milestone component version resolution keywords cc include_gantt dependencies due_assign due_close
47 検索 WebAPI 機能の仕様 h-morita yy "= 検索 WebAPI 機能の仕様 =
== インタフェース ==
=== SOAP ===
* WSDL
* /search/service.wsdl
* エントリポイント
* /search/api
* SOAPAction
* /search/api/GetResourceInfoByQueryTerm
* パラメータ仕様
|| パラメータ名 || パラメータ内容 || 必須/オプション || デフォルト値 || 設定可能な値 ||
|| expression || 検索文字列 || 必須 || ー || IndriRunQuery が対応可能な式 ||
|| max_results || 最大検索件数 || 必須 || ー || 1 〜 1000 ||
|| order || ソート方法 || 必須 || ー || relevance もしくは date ||
|| enable_hide_unfetched || 404ページの表示/非表示 || 必須 || ー || on もしくは off ||
|| enable_relevance_feedback || 疑似関連フィードバック || 必須|| ー || on もしくは off ||
=== REST ===
* URI
* /search.xml
* パラメータ仕様
* GET パラメータもしくは POST パラメータとして付与
|| パラメータ名 || パラメータ内容 || 必須/オプション || デフォルト値 || 設定可能な値 ||
|| query || 検索文字列 || 必須 || ー || IndriRunQuery が対応可能な式 ||
|| count || 最大検索件数 || オプション || 100 || 1 〜 1000 ||
|| sort_by || ソート方法 || オプション || relevance || relevance もしくは date ||
|| hide_unfetched || 404ページの表示/非表示 || オプション || on || on もしくは off ||
|| feedback || 疑似関連フィードバック || オプション || off || on もしくは off ||
== レスポンス仕様 ==
* Result_Set: 結果セット ( REST の場合は result_set )
* query: デフォルト値反映後の問い合わせ内容
* expression: 検索文字列パラメータ
* option: オプション系パラメータ
* max_result: 出力最大件数
* order: ソート方法
* enable_hide_unfetched: 404なオンラインリソース結果を表示するかどうか
* enable_relevance_feedback: 疑似フィードバックの有無
* status: 実行結果ステータス ( SOAP のみに存在 )
* code: ステータスコード
* name: ステータス名
* message: ステータスメッセージ
* results: 検索結果リスト
* item: 検索結果単体 ( REST の場合は result )
* rank: 検索一致ランク
* title: オンラインリソースタイトル
* snippet: スニペット
* mesh_list: MeSH リスト
* item: MeSH 単体 ( REST の場合は mesh )
* uri: オンラインリソース URI
* pages: 参照リンク検索 URI リスト
* google: google による参照リンク検索 URI
* altavista: altavista による参照リンク検索 URI
* papers: 参照文献検索 URI リスト
* bio_med_central: BioMed Central による参照文献検索 URI
* scirus: scirus による参照文献検索 URI
* high_wire_press: high wire press による参照文献検索 URI
* google_scholar: google scholar による参照文献検索 URI
* pubmed: 参照 PubMed の PMID リスト
* pmid: 参照 PubMed の pmid ( REST の場合は pmid )
== 結果サンプル ==
* 以下のクエリで Web API を呼び出した結果のサンプル
* 検索文字列 : #filreq(DNA.majr #combine(genome))
* クエリオプション
* 最大結果件数 : 3 件
* ソート方法 : 関連度順
* 404ページの表示/ 非表示 : 表示
* 疑似関連フィードバック : 無効
=== SOAP ===
* リクエスト
{{{
#filreq(DNA.majr #combine(genome))3relevancetruefalse
}}}
* レスポンス
{{{
#filreq(DNA.majr #combine(genome))Orefil::Successsuccess.20000168883521638193812045153152165541715107716888348163723321193225016722777125199451650093717142222155540571560823616888346Comparative <strong>Genomic</strong> Analysis Using the UCSC <strong>Genome</strong> Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape <strong>genomes</strong>. The University of California Santa Cruz (UCSC) <strong>Genome</strong> Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&ds=jnl&g=s&t=allhttp://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Searchhttp://scholar.google.com/scholar?hl=en&lr=&q=genome.ucsc.edu%2F&btnG=Searchhttp://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007UCSC Genome Browser Homehttp://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Google+Searchhttp://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&kgs=0&kls=1http://genome.ucsc.edu/1Abnormalities, MultipleCarbamoyl-Phosphate Synthase I Deficiency DiseaseChickensChromosome DeletionChromosome MappingChromosomes, Human, Pair 2Computational BiologyDNA PrimersDatabase Management SystemsDatabases, GeneticDatabases, Nucleic AcidDatabases, ProteinExonsGenomeGenome, HumanGenomicsInformation Storage and RetrievalInternetLinkage (Genetics)Microsatellite RepeatsPolymorphism, Single NucleotideProteinsProteomeProteomicsRNA, MessengerSequence AlignmentSoftwareZebrafish1468148516108715Finding anchors for <strong>genomic</strong> sequence comparison . Recent sequencing of the human and other mammalian <strong>genomes</strong> has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice <strong>Genome</strong> Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic <strong>Genome</strong> Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&ds=jnl&g=s&t=allhttp://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Searchhttp://scholar.google.com/scholar?hl=en&lr=&q=www.genome.ucsc.edu%2F&btnG=Searchhttp://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007UCSC Genome Browser Homehttp://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Google+Searchhttp://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&kgs=0&kls=1http://www.genome.ucsc.edu/2Chromosome MappingDatabases, GeneticGene Expression ProfilingGenomeOligonucleotide Array Sequence AnalysisSequence AlignmentSequence Analysis, DNASoftwareUser-Computer Interface15215396IsoFinder : computational prediction of isochores in <strong>genome</strong> sequences . Isochores are long <strong>genome</strong> segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous <strong>genome</strong> regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&ds=jnl&g=s&t=allhttp://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Searchhttp://scholar.google.com/scholar?hl=en&lr=&q=genome.cse.ucsc.edu%2F&btnG=Searchhttp://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007UCSC Genome Browser Homehttp://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Google+Searchhttp://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&kgs=0&kls=1http://genome.cse.ucsc.edu/3Computational BiologyGenomicsIsochoresSoftware
}}}
=== REST ===
* リクエスト
{{{
http://localhost:3000/search.xml?query=%23filreq%28DNA.majr+%23combine%28genome%29%29&count=3&sort_by=relevance&hide_unfetched=on
}}}
* レスポンス
{{{
#filreq(DNA.majr #combine(genome))Thu Jan 17 19:37:26 +0900 20081UCSC Genome Browser Home
Comparative Genomic Analysis Using the UCSC Genome Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape genomes. The University of California Santa Cruz (UCSC) Genome Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...
Abnormalities, MultipleCarbamoyl-Phosphate Synthase I Deficiency DiseaseChickensChromosome DeletionChromosome MappingChromosomes, Human, Pair 2Computational BiologyDNA PrimersDatabase Management SystemsDatabases, GeneticDatabases, Nucleic AcidDatabases, ProteinExonsGenomeGenome, HumanGenomicsInformation Storage and RetrievalInternetLinkage (Genetics)Microsatellite RepeatsPolymorphism, Single NucleotideProteinsProteomeProteomicsRNA, MessengerSequence AlignmentSoftwareZebrafishhttp://genome.ucsc.edu/
http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&btnG=Google+Search
http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&kgs=0&kls=1
http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search
http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&ds=jnl&g=s&t=all
http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007
http://scholar.google.com/scholar?hl=en&lr=&q=genome.ucsc.edu%2F&btnG=Search
1688835216381938120451531521655417151077168883481637233211932250167227771251994516500937171422221555405715608236168883462UCSC Genome Browser Home
Finding anchors for genomic sequence comparison . Recent sequencing of the human and other mammalian genomes has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice Genome Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic Genome Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...
Chromosome MappingDatabases, GeneticGene Expression ProfilingGenomeOligonucleotide Array Sequence AnalysisSequence AlignmentSequence Analysis, DNASoftwareUser-Computer Interfacehttp://www.genome.ucsc.edu/
http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&btnG=Google+Search
http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&kgs=0&kls=1
http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search
http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&ds=jnl&g=s&t=all
http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007
http://scholar.google.com/scholar?hl=en&lr=&q=www.genome.ucsc.edu%2F&btnG=Search
14681485161087153UCSC Genome Browser Home
IsoFinder : computational prediction of isochores in genome sequences . Isochores are long genome segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous genome regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...
Computational BiologyGenomicsIsochoresSoftwarehttp://genome.cse.ucsc.edu/
http://www.google.com/search?hl=en&q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&btnG=Google+Search
http://www.altavista.com/web/results?itag=ody&q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&kgs=0&kls=1
http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&chkBMCJournals=true&chkCurrentOpinion=true&drpFromDate=&drpToDate=&chkNSP=true&drpAddedInLast=&drpOrderBy=by+date&drpPerPage=20&drpAbstract=no+abstract&strTempString=&strSearchBoxType=bmc_boolean_results&Search.x=10&jou_id=&Search.x=0&Search.y=0&Search=Search
http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&ds=jnl&g=s&t=all
http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Dec&tyear=2007&fdatedef=1+January+1844&tdatedef=31+Dec+2007
http://scholar.google.com/scholar?hl=en&lr=&q=genome.cse.ucsc.edu%2F&btnG=Search
15215396
}}}" 仕様 new 各マイルストーンで解決する Iterate5(1/10) OReFiL 0 YYYY/MM/DD YYYY/MM/DD