[2] | 1 | package org.biohackathon.SPARQLBuilder.OWL;
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| 2 |
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| 3 | import java.util.ArrayList;
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| 4 | import java.util.Collection;
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| 5 | import java.util.HashMap;
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| 6 | import java.util.HashSet;
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| 7 | import java.util.Set;
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| 8 |
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| 9 | import com.hp.hpl.jena.query.Query;
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| 10 | import com.hp.hpl.jena.query.QueryExecution;
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| 11 | import com.hp.hpl.jena.query.QueryExecutionFactory;
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| 12 | import com.hp.hpl.jena.query.QueryFactory;
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| 13 | import com.hp.hpl.jena.query.QuerySolution;
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| 14 | import com.hp.hpl.jena.query.ResultSet;
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[10] | 15 | import com.hp.hpl.jena.rdf.model.Literal;
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[2] | 16 | import com.hp.hpl.jena.rdf.model.Resource;
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[5] | 17 |
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[2] | 18 | /**
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| 19 | * 繧ッ繧ィ繝ェ繧堤函謌舌☆繧九◆繧√�讖溯�繧呈署萓帙☆繧区ク繧ッ繝ゥ繧ケ
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[22] | 20 | *
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[2] | 21 | * @author Norio KOBAYASHI
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| 22 | * @since 28.01.2014
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| 23 | * @version 29.01.2014
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| 24 | */
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| 25 | public class OWLQueryBuilderImpl implements OWLQueryBuilder {
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| 26 |
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| 27 | // private Model model = null;
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| 28 | private String endpointURI = null;
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| 29 |
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| 30 | /**
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| 31 | * 繧「繧ッ繧サ繧ケ縺吶kSPARQL endpoint縺ョURI繧呈欠螳壹☆繧区ァ区�蟄� |
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| 32 | *
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[22] | 33 | * @param endpointURI
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| 34 | * 縲繧「繧ッ繧サ繧ケ縺吶kSPARQL endpoint縺ョURI
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[2] | 35 | * @throws Exception
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| 36 | * @since 28.01.2014
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| 37 | */
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| 38 | public OWLQueryBuilderImpl(String endpointURI) {
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| 39 | this.endpointURI = endpointURI;
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| 40 | }
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| 41 |
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| 42 | /**
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| 43 | * 繝�せ繝医↓菴ソ逕ィ縺吶kmain繝。繧ス繝�ラ
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| 44 | * <p>
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| 45 | * 繧ッ繧ィ繝ェ繝薙Ν繝繝シ縺ョ譛ャ逡ェ繝励Ο繧ー繝ゥ繝縺ァ縺ッ縺薙�繝。繧ス繝�ラ縺ッ菴ソ逕ィ縺励↑縺� |
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| 46 | * </p>
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[22] | 47 | *
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| 48 | * @param args
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| 49 | * 菴ソ逕ィ縺励↑縺� |
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[2] | 50 | * @throws Exception
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| 51 | * @since 28.01.2014
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| 52 | */
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| 53 | public static void main(String[] args) throws Exception {
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[36] | 54 | // String sparqlEndpoint = "http://dbpedia.org/sparql";
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| 55 | String sparqlEndpoint = "http://lsd.dbcls.jp/sparql";
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| 56 | // String keyword = "artiste";
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| 57 | String keyword = "EnglishCode";
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[2] | 58 | String[] graphURIs = new String[0];
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| 59 |
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[36] | 60 | keyword = null;
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| 61 |
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[2] | 62 | OWLQueryBuilder builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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[42] | 63 |
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| 64 | /*
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[28] | 65 | SClass[] clz = builder.getOWLClasses(graphURIs, keyword, false);
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[22] | 66 | for (SClass cls : clz) {
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[2] | 67 | System.out.println(cls);
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| 68 | }
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[31] | 69 | clz = builder.countInstances(null, clz);
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| 70 | for (SClass cls : clz) {
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| 71 | System.out.println(cls);
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| 72 | }
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[42] | 73 | */
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[46] | 74 |
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[49] | 75 |
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[36] | 76 | System.out.println("CLS");
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| 77 |
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[42] | 78 | String uri = "http://purl.jp/bio/10/lsd/ontology/201209#EnglishEntry";
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| 79 |
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[46] | 80 | ClassLink[] cls = null;
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| 81 | try{
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| 82 | cls = builder.getNextClass(null, uri, 100, false);
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| 83 | }catch(Exception ex) {
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| 84 | ex.printStackTrace();
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| 85 | }
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[42] | 86 |
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[46] | 87 | System.out.println("Solutions: ");
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[26] | 88 | if (cls != null) {
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| 89 | for (ClassLink cl : cls) {
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| 90 | System.out.println(cl.toString());
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| 91 | }
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[42] | 92 | cls = builder.countLinks(null, uri, cls);
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[26] | 93 | for (ClassLink cl : cls) {
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| 94 | System.out.println(cl.toString());
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| 95 | }
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| 96 | }
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[46] | 97 |
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[49] | 98 | /*
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[46] | 99 |
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[49] | 100 | String uri = "http://purl.jp/bio/10/lsd/ontology/201209#EnglishEntry";
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[46] | 101 |
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[49] | 102 | ClassLink[] cls = null;
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[46] | 103 |
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[36] | 104 | System.out.println("CLS-INS");
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[46] | 105 | cls = null;
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| 106 | try{
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| 107 | cls = builder.getNextClassViaInstanceLink(null, uri, 100);
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| 108 | }catch(Exception ex){
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| 109 | ex.printStackTrace();
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| 110 | }
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[36] | 111 | if (cls != null) {
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| 112 | for (ClassLink cl : cls) {
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| 113 | System.out.println(cl.toString());
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| 114 | }
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| 115 | }
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[46] | 116 | */
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| 117 | /*
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[36] | 118 | System.out.println("Instances");
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| 119 | Instance[] ins = builder.getInstances(null, "\"A.C. Reed\"@en");
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| 120 | if (ins != null) {
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| 121 | for (Instance in : ins) {
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| 122 | System.out.println(in.toString());
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| 123 | }
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| 124 | }
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[42] | 125 | */
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[22] | 126 | /*
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| 127 | * System.out.println("INS-INS"); ins = builder.getInstances(null,
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| 128 | * "\"A.C. Reed\"@en"); InstanceLink[] iLinks =
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| 129 | * builder.getNextInstancesViaInstanceLink(null,
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| 130 | * ins[0].getInstanceURI(), 100);
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| 131 | *
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[36] | 132 | * if (iLinks != null) { for (InstanceLink in : iLinks) {
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[22] | 133 | * System.out.println(in.toString()); } }
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| 134 | */
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[2] | 135 | }
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| 136 |
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[42] | 137 |
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| 138 |
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| 139 |
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[2] | 140 | /**
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| 141 | * 譏守、コ逧�↓RDF縺ァ譖ク縺九l縺ヲ縺�k繧ッ繝ゥ繧ケ繧貞叙蠕励☆繧� |
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| 142 | * <p>
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[22] | 143 | * 謖�ョ壹&繧後◆graphURIs縺ョ荳ュ縺九i縲√く繝シ繝ッ繝シ繝峨↓繝偵ャ繝医☆繧九Λ繝吶Ν繧呈戟縺、繧ッ繝ゥ繧ケ��dfs:Class�峨r縺吶∋縺ヲ霑斐☆ <br>
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[2] | 144 | * </p>
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| 145 | *
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[22] | 146 | * @param graphURIs
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| 147 | * 縲讀懃エ「蟇セ雎。縺ョgraph縺ョURI驟榊� (null繧�聞縺�縺ョ驟榊�繧ょ庄)
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| 148 | * @param keyword
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| 149 | * ��ull繧�ゥコ譁�ュ励�荳榊庄�� |
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[2] | 150 | * @return 繧ッ繝ゥ繧ケURI縺ョ驟榊�
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| 151 | * @throws Exception
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| 152 | * @since 28.01.2014
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| 153 | */
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[28] | 154 | public SClass[] getOWLClasses(String[] graphURIs, String keyword,
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| 155 | boolean countInstances) throws Exception {
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[2] | 156 | StringBuffer queryStr = new StringBuffer();
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| 157 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
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| 158 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
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| 159 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
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[28] | 160 | if (countInstances) {
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| 161 | queryStr.append("SELECT DISTINCT ?c ?pLabel (COUNT(?i) AS ?numOfInstances)\n");
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| 162 | } else {
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| 163 | queryStr.append("SELECT DISTINCT ?c ?pLabel \n");
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| 164 | }
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[2] | 165 | if (graphURIs != null) {
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| 166 | for (String graphURI : graphURIs) {
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| 167 | queryStr.append("FROM <");
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| 168 | queryStr.append(graphURI);
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| 169 | queryStr.append(">\n");
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| 170 | }
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| 171 | }
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| 172 | queryStr.append("WHERE{\n");
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[22] | 173 |
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[42] | 174 | //
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[2] | 175 | queryStr.append(" {?c rdf:type rdfs:Class} UNION {?c rdf:type owl:Class}\n");
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[36] | 176 | // queryStr.append(" ?i rdf:type ?c.\n");
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[2] | 177 |
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[36] | 178 |
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| 179 |
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[28] | 180 | if (countInstances) {
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[36] | 181 | queryStr.append(" ?c rdfs:label ?label.\n");
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| 182 | }
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| 183 | queryStr.append(" ?c rdfs:label ?pLabel.\n");
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| 184 | if (countInstances) {
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[28] | 185 | queryStr.append(" ?i rdf:type ?c.\n");
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| 186 | }
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[22] | 187 | // queryStr.append(" ?c rdfs:label ");
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| 188 | // queryStr.append(keyword);
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| 189 | // queryStr.append(".");
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[28] | 190 | if (keyword != null && keyword.length() != 0) {
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| 191 | queryStr.append(" FILTER (\n");
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| 192 | queryStr.append(" REGEX( ?label , \"");
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| 193 | queryStr.append(keyword);
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| 194 | queryStr.append("\" , \"i\" )\n");
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[36] | 195 | queryStr.append(" )\n");
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[28] | 196 | }
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| 197 | if (countInstances) {
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[36] | 198 | queryStr.append("} GROUP BY ?c ?pLabel");
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[28] | 199 | } else {
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[36] | 200 | queryStr.append("}");
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[28] | 201 | }
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[22] | 202 | System.out.println(queryStr.toString());
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| 203 |
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[2] | 204 | Query query = QueryFactory.create(queryStr.toString());
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| 205 |
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[46] | 206 |
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| 207 | QueryExecution qexec = null;
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| 208 | try{
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| 209 | long start = System.currentTimeMillis();
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| 210 | qexec = QueryExecutionFactory.sparqlService(endpointURI,
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| 211 | query);
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| 212 | long end = System.currentTimeMillis();
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| 213 | System.out.println("EXEC TIME: " + (end-start));
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| 214 | }catch(Exception ex){
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| 215 | ex.printStackTrace();
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| 216 | throw ex;
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| 217 | }
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| 218 |
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[2] | 219 | ResultSet results = qexec.execSelect();
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[22] | 220 | HashMap<String, SClass> classMap = new HashMap<String, SClass>();
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[2] | 221 | for (; results.hasNext();) {
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| 222 | QuerySolution sol = results.next();
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| 223 | Resource res = sol.getResource("c");
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[22] | 224 | if (res != null) {
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| 225 | String uri = res.getURI();
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[31] | 226 | int numOfInstances = 0;
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[36] | 227 | if (countInstances) {
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[31] | 228 | numOfInstances = sol.getLiteral("numOfInstances").getInt();
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| 229 | }
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[22] | 230 | // System.out.println(numOfInstances);
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| 231 | Literal labelLiteral = sol.getLiteral("pLabel");
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| 232 | SClass sClass = null;
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| 233 | if (classMap.containsKey(uri)) {
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| 234 | sClass = classMap.get(uri);
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| 235 | } else {
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[10] | 236 | sClass = new SClass(uri, null, numOfInstances);
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| 237 | classMap.put(uri, sClass);
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[22] | 238 | }
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| 239 | if (labelLiteral != null) {
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[10] | 240 | String label = labelLiteral.getString();
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| 241 | String lang = labelLiteral.getLanguage();
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| 242 | sClass.addLabel(new Label(label, lang));
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| 243 | }
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[22] | 244 | }
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[2] | 245 | }
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| 246 | qexec.close();
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[10] | 247 | return classMap.values().toArray(new SClass[0]);
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[2] | 248 | }
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| 249 |
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| 250 | /**
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[22] | 251 | * 縲繧、繝ウ繧ケ繧ソ繝ウ繧ケ繧貞叙蠕励☆繧� |
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[2] | 252 | * <p>
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[22] | 253 | * 謖�ョ壹&繧後◆graphURIs縺ョ荳ュ縺九i縲√く繝シ繝ッ繝シ繝峨↓繝偵ャ繝医☆繧九Λ繝吶Ν繧呈戟縺、繧、繝ウ繧ケ繧ソ繝ウ繧ケ繧偵☆縺ケ縺ヲ霑斐☆ <br>
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| 254 | * 縺薙%縺ァ繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ィ縺ッ縲〉df:type縺ョ荳サ隱槭→縺励※險倩ソー縺輔l縺ヲ縺�k繧ゅ�繧偵>縺�<br>
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[2] | 255 | * </p>
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| 256 | *
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[22] | 257 | * @param graphURIs
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| 258 | * 縲讀懃エ「蟇セ雎。縺ョgraph縺ョURI驟榊� (null繧�聞縺�縺ョ驟榊�繧ょ庄)
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| 259 | * @param keyword
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| 260 | * ��ull繧�ゥコ譁�ュ励�荳榊庄�� |
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[2] | 261 | * @return 繧ッ繝ゥ繧ケURI縺ョ驟榊�
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| 262 | * @throws Exception
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| 263 | * @since 28.01.2014
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| 264 | */
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| 265 | public Instance[] getInstances(String[] graphURIs, String keyword)
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| 266 | throws Exception {
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| 267 | StringBuffer queryStr = new StringBuffer();
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| 268 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
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| 269 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
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| 270 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
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| 271 | queryStr.append("SELECT DISTINCT ?ins ?c \n");
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| 272 | if (graphURIs != null) {
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| 273 | for (String graphURI : graphURIs) {
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| 274 | queryStr.append("FROM <");
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| 275 | queryStr.append(graphURI);
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| 276 | queryStr.append(">\n");
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| 277 | }
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| 278 | }
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| 279 | queryStr.append("WHERE{\n");
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[22] | 280 | // queryStr.append(" {?c rdf:type rdfs:Class} UNION {?c rdf:type owl:Class}\n");
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[2] | 281 |
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| 282 | queryStr.append(" ?ins rdf:type ?c.\n");
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| 283 | queryStr.append(" ?ins rdfs:label ");
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| 284 | queryStr.append(keyword);
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| 285 | queryStr.append(".\n");
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| 286 | queryStr.append(" FILTER (?c != rdf:Property)");
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| 287 | queryStr.append("}");
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[22] | 288 |
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| 289 | // System.out.println(queryStr.toString());
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| 290 |
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[2] | 291 | Query query = QueryFactory.create(queryStr.toString());
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| 292 | QueryExecution qexec = QueryExecutionFactory.sparqlService(endpointURI,
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| 293 | query);
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| 294 |
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| 295 | ResultSet results = qexec.execSelect();
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| 296 | HashMap<String, HashSet<String>> instanceMap = new HashMap<String, HashSet<String>>();
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| 297 | for (; results.hasNext();) {
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| 298 | QuerySolution sol = results.next();
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| 299 | Resource cls = sol.getResource("c");
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| 300 | Resource ins = sol.getResource("ins");
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| 301 | String clsURI = cls.getURI();
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| 302 | String insURI = ins.getURI();
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[22] | 303 | if (instanceMap.containsKey(insURI)) {
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[2] | 304 | HashSet<String> classes = instanceMap.get(insURI);
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| 305 | classes.add(clsURI);
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[22] | 306 | } else {
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[2] | 307 | HashSet<String> classes = new HashSet<String>();
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| 308 | instanceMap.put(insURI, classes);
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| 309 | classes.add(clsURI);
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| 310 | }
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| 311 | }
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| 312 | qexec.close();
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| 313 | Set<String> keySet = instanceMap.keySet();
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| 314 | ArrayList<Instance> instanceList = new ArrayList<Instance>();
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[22] | 315 | for (String key : keySet) {
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| 316 | Instance ins = new Instance(key, instanceMap.get(key).toArray(
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| 317 | new String[0]));
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[2] | 318 | instanceList.add(ins);
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| 319 | }
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| 320 | return instanceList.toArray(new Instance[0]);
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| 321 | }
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| 322 |
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| 323 | /**
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[22] | 324 | * 縲謖�ョ壹&繧後◆繧ッ繝ゥ繧ケ繧定オキ轤ケ縺ィ縺励∵�遉コ逧�↓險倩ソー縺輔l縺ヲ縺�kOWL縺ョproperty蛻カ邏�r隱ソ縺ケ縲√◎縺ョproperty蛻カ邏�〒
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[2] | 325 | * 髢「騾」縺・縺代i繧後※縺�k繧ッ繝ゥ繧ケ繧堤カイ鄒�噪縺ォ蜿門セ励☆繧� |
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| 326 | * <p>
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[22] | 327 | * 蜃ヲ逅�ッセ雎。繝��繧ソ繧暖raphURIs縺ァ謖�ョ壹☆繧九%縺ィ縺後〒縺阪k <br>
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[2] | 328 | * <br>
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| 329 | * </p>
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| 330 | *
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[22] | 331 | * @param graphURIs
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| 332 | * 縲讀懃エ「蟇セ雎。縺ョgraph縺ョURI驟榊� 縲(null繧�聞縺�縺ョ驟榊�繧ょ庄)
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| 333 | * @param originClass
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| 334 | * 襍キ轤ケ縺ィ縺ェ繧九け繝ゥ繧ケ縺ョURI縲��ull荳榊庄�� |
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| 335 | * @param limit
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| 336 | * 隗」縺ィ縺励※霑斐&繧後kClassLink驟榊�縺ョ髟キ縺輔�荳企剞蛟、繧呈欠螳壹☆繧九�荳企剞蛟、繧定ィュ螳壹@縺ェ縺�エ蜷医�0莉・荳九�蛟、繧呈欠螳壹☆繧�
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[2] | 337 | * @return ClassLink縺ョ驟榊�縲ゅ%縺薙↓縺ッ縲∝叙蠕励&繧後◆繧ッ繝ゥ繧ケ縺ィ髢「菫ゅ▼縺代i繧後※縺�k繝励Ο繝代ユ繧」縲�未菫ゅ�蜷代″縺悟性縺セ繧後k縲� |
---|
| 338 | * @throws Exception
|
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| 339 | * @since 28.01.2014
|
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| 340 | */
|
---|
| 341 | public ClassLink[] getNextClass(String[] graphURIs, String originClass,
|
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[20] | 342 | int limit, boolean countLinks) throws Exception {
|
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[42] | 343 | ClassLink[] cLinks = getNextClassSub(graphURIs, originClass, limit, false);
|
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| 344 | if( countLinks ){
|
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| 345 | cLinks = countLinks(graphURIs, originClass, cLinks);
|
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| 346 | }
|
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| 347 | return cLinks;
|
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| 348 | }
|
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| 349 |
|
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| 350 | private ClassLink[] getNextClassSub(String[] graphURIs, String originClass,
|
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| 351 | int limit, boolean countLinks) throws Exception {
|
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| 352 | StringBuffer queryStr = new StringBuffer();
|
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[2] | 353 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
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| 354 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 355 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
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[20] | 356 |
|
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| 357 | // SELECT
|
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[22] | 358 | if (countLinks) {
|
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[49] | 359 | queryStr.append("SELECT DISTINCT ?p ?pDirection ?c (COUNT(?oci) AS ?numOfOriginalClassInstances) (COUNT(?lci) AS ?numOfLinkedClassInstances) (COUNT(?s) AS ?numOfLinks) (COUNT(DISTINCT(?s)) AS ?numOfLinkedInstances) \n");
|
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[22] | 360 | } else {
|
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[20] | 361 | queryStr.append("SELECT DISTINCT ?p ?pDirection ?c \n");
|
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| 362 | }
|
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[22] | 363 |
|
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[2] | 364 | if (graphURIs != null) {
|
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| 365 | for (String graphURI : graphURIs) {
|
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| 366 | queryStr.append("FROM <");
|
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| 367 | queryStr.append(graphURI);
|
---|
| 368 | queryStr.append(">\n");
|
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| 369 | }
|
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| 370 | }
|
---|
| 371 | queryStr.append("WHERE{\n");
|
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[28] | 372 | // queryStr.append(" { ?c rdf:type rdfs:Class. }\n UNION\n { ?c rdf:type owl:Class. }\n");
|
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[2] | 373 | queryStr.append(" { ?p rdfs:domain <");
|
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| 374 | queryStr.append(originClass);
|
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[19] | 375 | queryStr.append(">.\n ?p rdfs:range ?c.\n");
|
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[27] | 376 |
|
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[22] | 377 | if (countLinks) {
|
---|
| 378 | queryStr.append(" ?o ?p ?s.");
|
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[28] | 379 | } else {
|
---|
[27] | 380 | queryStr.append("filter(exists{\n");
|
---|
| 381 | queryStr.append(" ?o rdf:type ?c.\n");
|
---|
| 382 | queryStr.append(" ?s rdf:type <");
|
---|
| 383 | queryStr.append(originClass);
|
---|
| 384 | queryStr.append(">.\n");
|
---|
| 385 | queryStr.append(" ?s ?p ?o.})\n");
|
---|
[20] | 386 | }
|
---|
[22] | 387 |
|
---|
[19] | 388 | queryStr.append("}\n UNION\n");
|
---|
[2] | 389 | queryStr.append(" { ?p rdfs:range <");
|
---|
| 390 | queryStr.append(originClass);
|
---|
[5] | 391 | queryStr.append(">.\n");
|
---|
| 392 | queryStr.append(" ?p rdfs:domain ?c.\n");
|
---|
[20] | 393 |
|
---|
[22] | 394 | if (countLinks) {
|
---|
| 395 | queryStr.append(" ?s ?p ?o.");
|
---|
[28] | 396 | } else {
|
---|
[27] | 397 | queryStr.append("filter(exists{\n");
|
---|
| 398 | queryStr.append(" ?s rdf:type ?c.\n");
|
---|
| 399 | queryStr.append(" ?o rdf:type <");
|
---|
| 400 | queryStr.append(originClass);
|
---|
| 401 | queryStr.append(">.\n");
|
---|
| 402 | queryStr.append(" ?s ?p ?o.})\n");
|
---|
[20] | 403 | }
|
---|
[22] | 404 |
|
---|
[19] | 405 | queryStr.append("}\n");
|
---|
[5] | 406 |
|
---|
| 407 | queryStr.append(" ?p ?pDirection ?c.\n");
|
---|
| 408 |
|
---|
[54] | 409 | // queryStr.append(" ?s rdf:type ?c.\n");
|
---|
[20] | 410 |
|
---|
[22] | 411 | if (countLinks) {
|
---|
[20] | 412 | queryStr.append("}\nGROUP BY ?p ?pDirection ?c\n");
|
---|
[22] | 413 | } else {
|
---|
[20] | 414 | queryStr.append("}\n");
|
---|
| 415 | }
|
---|
[2] | 416 | if (limit > 0) {
|
---|
| 417 | queryStr.append("limit ");
|
---|
| 418 | queryStr.append(limit);
|
---|
| 419 | queryStr.append("\n");
|
---|
| 420 | }
|
---|
[22] | 421 |
|
---|
[46] | 422 | System.out.println("getNextClasses SPARQL Query: ");
|
---|
[22] | 423 | System.out.println(queryStr.toString());
|
---|
| 424 |
|
---|
[2] | 425 | Query query = QueryFactory.create(queryStr.toString());
|
---|
[46] | 426 | QueryExecution qexec = null;
|
---|
| 427 | try{
|
---|
| 428 | qexec = QueryExecutionFactory.sparqlService(endpointURI,
|
---|
[2] | 429 | query);
|
---|
[46] | 430 | }catch(Exception ex){
|
---|
| 431 | ex.printStackTrace();
|
---|
| 432 | throw ex;
|
---|
| 433 | }
|
---|
| 434 |
|
---|
| 435 | ResultSet results = null;
|
---|
| 436 | try{
|
---|
| 437 | long start = System.currentTimeMillis();
|
---|
| 438 | results = qexec.execSelect();
|
---|
| 439 | long end = System.currentTimeMillis();
|
---|
| 440 | System.out.println("EXEC TIME: " + (end-start));
|
---|
| 441 | }catch(Exception ex){
|
---|
| 442 | ex.printStackTrace();
|
---|
| 443 | throw ex;
|
---|
| 444 | }
|
---|
| 445 |
|
---|
[2] | 446 | ArrayList<ClassLink> solCLs = new ArrayList<ClassLink>();
|
---|
| 447 | for (; results.hasNext();) {
|
---|
| 448 | QuerySolution sol = results.next();
|
---|
| 449 | Resource pro = sol.getResource("p");
|
---|
[22] | 450 | if (pro != null) {
|
---|
| 451 | Resource cls = sol.getResource("c");
|
---|
| 452 | Resource dir = sol.getResource("pDirection");
|
---|
| 453 | String proURI = pro.getURI();
|
---|
| 454 | String clsURI = cls.getURI();
|
---|
| 455 | String dirURI = dir.getURI();
|
---|
[2] | 456 |
|
---|
[22] | 457 | // System.out.println(pro.getURI() + " " + cls.getURI() + " " +
|
---|
| 458 | // dir.getURI());
|
---|
| 459 |
|
---|
| 460 | Direction direction = null;
|
---|
| 461 | if (dirURI
|
---|
| 462 | .equals("http://www.w3.org/2000/01/rdf-schema#domain")
|
---|
| 463 | || dirURI.equals("rdfs:domain")) {
|
---|
| 464 | direction = Direction.reverse;
|
---|
[2] | 465 | }
|
---|
[22] | 466 | if (dirURI.equals("http://www.w3.org/2000/01/rdf-schema#range")
|
---|
| 467 | || dirURI.equals("rdfs:range")) {
|
---|
| 468 | if (direction != null) {
|
---|
| 469 | direction = Direction.both;
|
---|
| 470 | } else {
|
---|
| 471 | direction = Direction.forward;
|
---|
| 472 | }
|
---|
| 473 | }
|
---|
| 474 | // System.out.println(direction);
|
---|
[23] | 475 | int numOfLinks = 0;
|
---|
[26] | 476 | if (countLinks) {
|
---|
| 477 | numOfLinks = sol.getLiteral("numOfLinks").getInt();
|
---|
[23] | 478 | }
|
---|
[22] | 479 | ClassLink cl = new ClassLink(proURI, clsURI, direction,
|
---|
[49] | 480 | numOfLinks, 0, 0, 0, 0 );
|
---|
[22] | 481 | solCLs.add(cl);
|
---|
[2] | 482 | }
|
---|
| 483 | }
|
---|
| 484 | qexec.close();
|
---|
| 485 | return solCLs.toArray(new ClassLink[0]);
|
---|
| 486 | }
|
---|
[22] | 487 |
|
---|
[2] | 488 | /**
|
---|
[22] | 489 | * 縲謖�ョ壹&繧後◆繧ッ繝ゥ繧ケ繧定オキ轤ケ縺ィ縺励√◎縺ョ繧ッ繝ゥ繧ケ縺ォ螻槭@縺ヲ縺�k繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ィ繝ェ繝ウ繧ッ縺悟シオ繧峨l縺ヲ縺�k繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ョ髮�粋繧貞叙蠕励@縲� |
---|
| 490 | * 蜿門セ励@縺溘う繝ウ繧ケ繧ソ繝ウ繧ケ縺ョ繧ッ繝ゥ繧ケ繧堤カイ鄒�噪縺ォ蜿門セ励☆繧� |
---|
[2] | 491 | * <p>
|
---|
[22] | 492 | * 縺薙%縺ァ繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ィ縺ッ縲〉df:type縺ョ荳サ隱槭→縺励※險倩ソー縺輔l縺ヲ縺�k繧ゅ�繧偵>縺�<br>
|
---|
| 493 | * 蜃ヲ逅�ッセ雎。繝��繧ソ繧暖raphURIs縺ァ謖�ョ壹☆繧九%縺ィ縺後〒縺阪k <br>
|
---|
[2] | 494 | * </p>
|
---|
| 495 | *
|
---|
[22] | 496 | * @param graphURIs
|
---|
| 497 | * 縲讀懃エ「蟇セ雎。縺ョgraph縺ョURI驟榊� 縲(null繧�聞縺�縺ョ驟榊�繧ょ庄)
|
---|
| 498 | * @param originClass
|
---|
| 499 | * 襍キ轤ケ縺ィ縺ェ繧九け繝ゥ繧ケ縺ョURI縲��ull荳榊庄�� |
---|
| 500 | * @param limit
|
---|
| 501 | * 隗」縺ィ縺励※霑斐&繧後kClassLink驟榊�縺ョ髟キ縺輔�荳企剞蛟、繧呈欠螳壹☆繧九�荳企剞蛟、繧定ィュ螳壹@縺ェ縺�エ蜷医�0莉・荳九�蛟、繧呈欠螳壹☆繧�
|
---|
[2] | 502 | * @return ClassLink縺ョ驟榊�縲ゅ%縺薙↓縺ッ縲∝叙蠕励&繧後◆繧ッ繝ゥ繧ケ縺ィ髢「菫ゅ▼縺代i繧後※縺�k繝励Ο繝代ユ繧」縲�未菫ゅ�蜷代″縺悟性縺セ繧後k縲� |
---|
| 503 | * @throws Exception
|
---|
| 504 | * @since 28.01.2014
|
---|
| 505 | */
|
---|
[22] | 506 | public ClassLink[] getNextClassViaInstanceLink(String[] graphURIs,
|
---|
| 507 | String originClass, int limit) throws Exception {
|
---|
[2] | 508 | StringBuffer queryStr = new StringBuffer();
|
---|
| 509 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 510 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 511 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
[49] | 512 | queryStr.append("SELECT DISTINCT ?pf ?pr (COUNT(?pf) AS ?numOfForwardLinks) (COUNT(?pr) AS ?numOfReverseLinks) (COUNT(DISTINCT(?insOrg)) AS ?numOfOriginInstances) (COUNT(DISTINCT(?ins)) AS ?numOfLinkedInstances) ?c \n");
|
---|
[2] | 513 | if (graphURIs != null) {
|
---|
| 514 | for (String graphURI : graphURIs) {
|
---|
| 515 | queryStr.append("FROM <");
|
---|
| 516 | queryStr.append(graphURI);
|
---|
| 517 | queryStr.append(">\n");
|
---|
| 518 | }
|
---|
| 519 | }
|
---|
| 520 | queryStr.append("WHERE{\n");
|
---|
| 521 | queryStr.append(" ?ins rdf:type ?c.\n");
|
---|
| 522 | queryStr.append(" ?insOrg rdf:type <");
|
---|
| 523 | queryStr.append(originClass);
|
---|
| 524 | queryStr.append(">.\n");
|
---|
| 525 | queryStr.append(" { ?ins ?pr ?insOrg. }\n UNION { ?insOrg ?pf ?ins. }\n");
|
---|
| 526 | queryStr.append("}\n");
|
---|
[49] | 527 | queryStr.append("GROUP BY ?pf ?pr ?c\n");
|
---|
[2] | 528 | if (limit > 0) {
|
---|
| 529 | queryStr.append("limit ");
|
---|
| 530 | queryStr.append(limit);
|
---|
| 531 | queryStr.append("\n");
|
---|
| 532 | }
|
---|
[22] | 533 |
|
---|
[46] | 534 | System.out.println(queryStr.toString());
|
---|
[22] | 535 |
|
---|
[2] | 536 | Query query = QueryFactory.create(queryStr.toString());
|
---|
| 537 | QueryExecution qexec = QueryExecutionFactory.sparqlService(endpointURI,
|
---|
| 538 | query);
|
---|
| 539 |
|
---|
[49] | 540 | ResultSet results = null;
|
---|
| 541 | try{
|
---|
| 542 | long start = System.currentTimeMillis();
|
---|
| 543 | results = qexec.execSelect();
|
---|
| 544 | long end = System.currentTimeMillis();
|
---|
| 545 | System.out.println("EXEC TIME: " + (end-start));
|
---|
| 546 | }catch(Exception ex){
|
---|
| 547 | ex.printStackTrace();
|
---|
| 548 | throw ex;
|
---|
| 549 | }
|
---|
| 550 |
|
---|
[2] | 551 | ArrayList<ClassLink> solCLs = new ArrayList<ClassLink>();
|
---|
| 552 | for (; results.hasNext();) {
|
---|
| 553 | QuerySolution sol = results.next();
|
---|
| 554 | Resource proForward = sol.getResource("pf");
|
---|
| 555 | Resource proReverse = sol.getResource("pr");
|
---|
| 556 | Resource cls = sol.getResource("c");
|
---|
| 557 | Direction direction = null;
|
---|
| 558 | String propURI = null;
|
---|
[49] | 559 | int numOfLinks = 0;
|
---|
| 560 | int numOfLinkedInstances = 0;
|
---|
| 561 | int numOfOriginInstances = 0;
|
---|
[22] | 562 | if (proForward != null) {
|
---|
| 563 | if (proReverse != null) {
|
---|
[49] | 564 | numOfLinks = sol.getLiteral("numOfForwardLinks").getInt();
|
---|
| 565 | numOfLinks += sol.getLiteral("numOfReverseLinks").getInt();
|
---|
| 566 | numOfLinkedInstances = sol.getLiteral("numOfLinkedInstances").getInt();
|
---|
| 567 | numOfOriginInstances = sol.getLiteral("numOfOriginInstances").getInt();
|
---|
[2] | 568 | direction = Direction.both;
|
---|
[22] | 569 | } else {
|
---|
[49] | 570 | numOfLinkedInstances = sol.getLiteral("numOfLinkedInstances").getInt();
|
---|
| 571 | numOfOriginInstances = sol.getLiteral("numOfOriginInstances").getInt();
|
---|
| 572 | numOfLinks = sol.getLiteral("numOfForwardLinks").getInt();
|
---|
[2] | 573 | direction = Direction.forward;
|
---|
| 574 | }
|
---|
| 575 | propURI = proForward.getURI();
|
---|
[22] | 576 | } else {
|
---|
[2] | 577 | direction = Direction.reverse;
|
---|
| 578 | propURI = proReverse.getURI();
|
---|
[49] | 579 | numOfLinkedInstances = sol.getLiteral("numOfOriginInstances").getInt();
|
---|
| 580 | numOfOriginInstances = sol.getLiteral("numOfLinkedInstances").getInt();
|
---|
| 581 | numOfLinks = sol.getLiteral("numOfReverseLinks").getInt();
|
---|
[2] | 582 | }
|
---|
| 583 | String clsURI = cls.getURI();
|
---|
[22] | 584 | // System.out.println(propURI + " " + clsURI + " " + direction);
|
---|
| 585 |
|
---|
[49] | 586 | ClassLink cl = new ClassLink(propURI, clsURI, direction, numOfLinks, numOfOriginInstances, numOfLinkedInstances, 0, 0);
|
---|
[2] | 587 | solCLs.add(cl);
|
---|
| 588 | }
|
---|
| 589 | qexec.close();
|
---|
| 590 | return solCLs.toArray(new ClassLink[0]);
|
---|
| 591 | }
|
---|
| 592 |
|
---|
[36] | 593 | public Path[] getPaths(String startClass, String endClass, int mode,
|
---|
| 594 | boolean countLinks) throws Exception {
|
---|
[2] | 595 | OWLClassGraph graph = new OWLClassGraph(startClass, endClass);
|
---|
[32] | 596 | return graph.getPaths(this, mode, countLinks);
|
---|
[2] | 597 | }
|
---|
| 598 |
|
---|
| 599 | public String createSPARQL(Path path) throws Exception {
|
---|
| 600 | return null;
|
---|
| 601 | }
|
---|
| 602 |
|
---|
[22] | 603 | /*
|
---|
| 604 | * private String executeSelect(String sparqlQuery) throws Exception {
|
---|
| 605 | * HttpClient client = HttpClientBuilder.create().build(); HttpPost httppost
|
---|
| 606 | * = new HttpPost(endpointURI); httppost.setHeader("Content-Type",
|
---|
| 607 | * "application/x-www-form-urlencoded"); httppost.setHeader("Accept",
|
---|
| 608 | * "application/sparql-results+xml"); List<NameValuePair> nvpList = new
|
---|
| 609 | * ArrayList<NameValuePair>(); nvpList.add(new BasicNameValuePair("query",
|
---|
| 610 | * sparqlQuery)); // nvpList.add(new BasicNameValuePair("format", //
|
---|
| 611 | * outputFormat.getMime())); httppost.setEntity(new
|
---|
| 612 | * UrlEncodedFormEntity(nvpList, Charset .forName("UTF-8"))); HttpResponse
|
---|
| 613 | * response = client.execute(httppost); //
|
---|
| 614 | * System.out.println("[StatusLine] " + response.getStatusLine());
|
---|
| 615 | * HttpEntity entity = response.getEntity(); String entityString =
|
---|
| 616 | * EntityUtils.toString(entity, "UTF-8"); return entityString; }
|
---|
| 617 | */
|
---|
[2] | 618 |
|
---|
| 619 | /**
|
---|
[22] | 620 | * 縲謖�ョ壹&繧後◆繧、繝ウ繧ケ繧ソ繝ウ繧ケ繧定オキ轤ケ縺ィ縺励√◎縺ョ繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ォ繝ェ繝ウ繧ッ縺悟シオ繧峨l縺ヲ縺�k繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ョ髮�粋繧貞叙蠕励☆繧九� |
---|
| 621 | * 縲蜿門セ励&繧後◆蜷�う繝ウ繧ケ繧ソ繝ウ繧ケ縺ョ繧ッ繝ゥ繧ケ繧らカイ鄒�噪縺ォ蜿門セ励☆繧� |
---|
[2] | 622 | * <p>
|
---|
[22] | 623 | * 縺薙%縺ァ繧、繝ウ繧ケ繧ソ繝ウ繧ケ縺ィ縺ッ縲〉df:type縺ョ荳サ隱槭→縺励※險倩ソー縺輔l縺ヲ縺�k繧ゅ�繧偵>縺�<br>
|
---|
| 624 | * 蜃ヲ逅�ッセ雎。繝��繧ソ繧暖raphURIs縺ァ謖�ョ壹☆繧九%縺ィ縺後〒縺阪k <br>
|
---|
[2] | 625 | * </p>
|
---|
| 626 | *
|
---|
[22] | 627 | * @param graphURIs
|
---|
| 628 | * 縲讀懃エ「蟇セ雎。縺ョgraph縺ョURI驟榊� 縲(null繧�聞縺�縺ョ驟榊�繧ょ庄)
|
---|
| 629 | * @param originInstance
|
---|
| 630 | * 襍キ轤ケ縺ィ縺ェ繧九う繝ウ繧ケ繧ソ繝ウ繧ケ縺ョURI縲��ull荳榊庄�� |
---|
| 631 | * @param limit
|
---|
| 632 | * 隗」縺ィ縺励※霑斐&繧後kInstanceLink驟榊�縺ョ髟キ縺輔�荳企剞蛟、繧呈欠螳壹☆繧九�荳企剞蛟、繧定ィュ螳壹@縺ェ縺�エ蜷医�0莉・荳九�蛟、繧呈欠螳壹☆繧�
|
---|
[2] | 633 | * @return InstanceLink縺ョ驟榊�縲ゅ%縺薙↓縺ッ縲∝叙蠕励&繧後◆繧ッ繝ゥ繧ケ縺ィ髢「菫ゅ▼縺代i繧後※縺�k繝励Ο繝代ユ繧」縲�未菫ゅ�蜷代″縺悟性縺セ繧後k縲� |
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| 634 | * @throws Exception
|
---|
| 635 | * @since 28.01.2014
|
---|
| 636 | */
|
---|
[22] | 637 | public InstanceLink[] getNextInstancesViaInstanceLink(String[] graphURIs,
|
---|
| 638 | String originInstance, int limit) throws Exception {
|
---|
[2] | 639 | StringBuffer queryStr = new StringBuffer();
|
---|
| 640 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 641 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 642 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 643 | queryStr.append("SELECT DISTINCT ?pf ?pr ?ins ?c \n");
|
---|
| 644 | if (graphURIs != null) {
|
---|
| 645 | for (String graphURI : graphURIs) {
|
---|
| 646 | queryStr.append("FROM <");
|
---|
| 647 | queryStr.append(graphURI);
|
---|
| 648 | queryStr.append(">\n");
|
---|
| 649 | }
|
---|
| 650 | }
|
---|
| 651 | queryStr.append("WHERE{\n");
|
---|
[22] | 652 | // queryStr.append(" { ?c rdf:type rdfs:Class. }\n UNION\n { ?c rdf:type owl:Class. }\n");
|
---|
[2] | 653 | queryStr.append(" ?ins rdf:type ?c.\n");
|
---|
| 654 | queryStr.append(" { ?ins ?pr <");
|
---|
| 655 | queryStr.append(originInstance);
|
---|
| 656 | queryStr.append(">. }\n UNION { <");
|
---|
| 657 | queryStr.append(originInstance);
|
---|
| 658 | queryStr.append("> ?pf ?ins. }\n");
|
---|
| 659 |
|
---|
| 660 | queryStr.append(" FILTER (?c != rdf:Property)");
|
---|
| 661 |
|
---|
| 662 | queryStr.append("}\n");
|
---|
| 663 | if (limit > 0) {
|
---|
| 664 | queryStr.append("limit ");
|
---|
| 665 | queryStr.append(limit);
|
---|
| 666 | queryStr.append("\n");
|
---|
| 667 | }
|
---|
[22] | 668 |
|
---|
| 669 | // System.out.println(queryStr.toString());
|
---|
| 670 |
|
---|
[2] | 671 | Query query = QueryFactory.create(queryStr.toString());
|
---|
| 672 | QueryExecution qexec = QueryExecutionFactory.sparqlService(endpointURI,
|
---|
| 673 | query);
|
---|
| 674 |
|
---|
| 675 | ResultSet results = qexec.execSelect();
|
---|
| 676 | HashMap<String, InstanceLink> insLinkMap = new HashMap<String, InstanceLink>();
|
---|
| 677 | for (; results.hasNext();) {
|
---|
| 678 | QuerySolution sol = results.next();
|
---|
| 679 | Resource proForward = sol.getResource("pf");
|
---|
| 680 | Resource proReverse = sol.getResource("pr");
|
---|
| 681 | Resource ins = sol.getResource("ins");
|
---|
| 682 | Resource cls = sol.getResource("c");
|
---|
| 683 | Direction direction = null;
|
---|
| 684 | String propURI = null;
|
---|
[22] | 685 | if (proForward != null) {
|
---|
| 686 | if (proReverse != null) {
|
---|
[2] | 687 | direction = Direction.both;
|
---|
[22] | 688 | } else {
|
---|
[2] | 689 | direction = Direction.forward;
|
---|
| 690 | }
|
---|
| 691 | propURI = proForward.getURI();
|
---|
[22] | 692 | } else {
|
---|
[2] | 693 | direction = Direction.reverse;
|
---|
| 694 | propURI = proReverse.getURI();
|
---|
| 695 | }
|
---|
| 696 | String clsURI = cls.getURI();
|
---|
| 697 | String insURI = ins.getURI();
|
---|
| 698 | String key = propURI + "\t" + insURI + "\t" + direction;
|
---|
[22] | 699 | if (insLinkMap.containsKey(key)) {
|
---|
[2] | 700 | InstanceLink insLink = insLinkMap.get(key);
|
---|
| 701 | insLink.addLinkedClassURI(clsURI);
|
---|
[22] | 702 | } else {
|
---|
| 703 | InstanceLink insLink = new InstanceLink(propURI, insURI,
|
---|
| 704 | new String[] { clsURI }, direction);
|
---|
[2] | 705 | insLinkMap.put(key, insLink);
|
---|
| 706 | }
|
---|
| 707 | }
|
---|
| 708 | qexec.close();
|
---|
| 709 | Collection<InstanceLink> values = insLinkMap.values();
|
---|
| 710 | return values.toArray(new InstanceLink[0]);
|
---|
| 711 | }
|
---|
| 712 |
|
---|
[22] | 713 | public LabelMap[] getLabels(String[] graphURIs, String[] resourceURIs,
|
---|
| 714 | String language) throws Exception {
|
---|
| 715 | if (resourceURIs == null || resourceURIs.length == 0) {
|
---|
[19] | 716 | return new LabelMap[0];
|
---|
| 717 | }
|
---|
| 718 | StringBuffer queryStr = new StringBuffer();
|
---|
| 719 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 720 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 721 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 722 | queryStr.append("SELECT DISTINCT ?res ?label \n");
|
---|
| 723 | if (graphURIs != null) {
|
---|
| 724 | for (String graphURI : graphURIs) {
|
---|
| 725 | queryStr.append("FROM <");
|
---|
| 726 | queryStr.append(graphURI);
|
---|
| 727 | queryStr.append(">\n");
|
---|
| 728 | }
|
---|
| 729 | }
|
---|
| 730 | queryStr.append("WHERE{\n");
|
---|
| 731 | queryStr.append(" ?res rdfs:label ?label.\n");
|
---|
| 732 | queryStr.append(" FILTER(?res IN (");
|
---|
| 733 | boolean f = false;
|
---|
[22] | 734 | for (String resourceURI : resourceURIs) {
|
---|
| 735 | if (f) {
|
---|
[19] | 736 | queryStr.append(", ");
|
---|
| 737 | }
|
---|
| 738 | f = true;
|
---|
| 739 | queryStr.append("<");
|
---|
| 740 | queryStr.append(resourceURI);
|
---|
| 741 | queryStr.append(">");
|
---|
| 742 | }
|
---|
| 743 | queryStr.append("))\n");
|
---|
| 744 | queryStr.append("}");
|
---|
[22] | 745 |
|
---|
| 746 | System.out.println(queryStr.toString());
|
---|
| 747 |
|
---|
[19] | 748 | Query query = QueryFactory.create(queryStr.toString());
|
---|
| 749 | QueryExecution qexec = QueryExecutionFactory.sparqlService(endpointURI,
|
---|
| 750 | query);
|
---|
| 751 |
|
---|
| 752 | ResultSet results = qexec.execSelect();
|
---|
| 753 | HashMap<String, LabelMap> lMap = new HashMap<String, LabelMap>();
|
---|
| 754 | for (; results.hasNext();) {
|
---|
| 755 | QuerySolution sol = results.next();
|
---|
| 756 | String uri = sol.getResource("res").getURI();
|
---|
| 757 | Literal literal = sol.getLiteral("label");
|
---|
[22] | 758 | if (literal != null) {
|
---|
[19] | 759 | String label = literal.getString();
|
---|
| 760 | String lang = literal.getLanguage();
|
---|
[22] | 761 | if (language != null && language.equals(lang)) {
|
---|
[19] | 762 | Label lbl = new Label(label, lang);
|
---|
[22] | 763 | if (lMap.containsKey(uri)) {
|
---|
[19] | 764 | LabelMap lm = lMap.get(uri);
|
---|
| 765 | lm.addLabel(lbl);
|
---|
[22] | 766 | } else {
|
---|
| 767 | LabelMap lm = new LabelMap(uri, new Label[] { lbl });
|
---|
[19] | 768 | lMap.put(uri, lm);
|
---|
| 769 | }
|
---|
| 770 | }
|
---|
| 771 | }
|
---|
| 772 | }
|
---|
| 773 | return lMap.values().toArray(new LabelMap[0]);
|
---|
| 774 | }
|
---|
[22] | 775 |
|
---|
[26] | 776 | public ClassLink[] countLinks(String[] graphURIs, String startClassURI,
|
---|
| 777 | ClassLink[] classLinks) throws Exception {
|
---|
| 778 | if (classLinks == null || classLinks.length == 0) {
|
---|
| 779 | return new ClassLink[0];
|
---|
| 780 | }
|
---|
| 781 | for (ClassLink classLink : classLinks) {
|
---|
| 782 | StringBuffer queryStr = new StringBuffer();
|
---|
| 783 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 784 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 785 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 786 |
|
---|
[46] | 787 | queryStr.append("SELECT (COUNT(?os) AS ?numOfLinks) (COUNT(DISTINCT(?is)) AS ?numOfOriginInstances) (COUNT(DISTINCT(?os)) AS ?numOfLinkedInstances) \n");
|
---|
[26] | 788 | if (graphURIs != null) {
|
---|
| 789 | for (String graphURI : graphURIs) {
|
---|
| 790 | queryStr.append("FROM <");
|
---|
| 791 | queryStr.append(graphURI);
|
---|
| 792 | queryStr.append(">\n");
|
---|
| 793 | }
|
---|
| 794 | }
|
---|
| 795 |
|
---|
| 796 | queryStr.append("WHERE{\n");
|
---|
| 797 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 798 | queryStr.append("?is rdf:type <");
|
---|
| 799 | queryStr.append(startClassURI);
|
---|
| 800 | queryStr.append(">.\n");
|
---|
| 801 | queryStr.append("?os rdf:type <");
|
---|
| 802 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 803 | queryStr.append(">.\n");
|
---|
[42] | 804 | queryStr.append("?is <");
|
---|
| 805 | queryStr.append(classLink.getPropertyURI());
|
---|
| 806 | queryStr.append("> ?os.\n");
|
---|
[26] | 807 | queryStr.append("}");
|
---|
| 808 | } else {
|
---|
| 809 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 810 | queryStr.append("?os rdf:type <");
|
---|
| 811 | queryStr.append(startClassURI);
|
---|
| 812 | queryStr.append(">.\n");
|
---|
| 813 | queryStr.append("?is rdf:type <");
|
---|
| 814 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 815 | queryStr.append(">.\n");
|
---|
[42] | 816 | queryStr.append("?is <");
|
---|
| 817 | queryStr.append(classLink.getPropertyURI());
|
---|
| 818 | queryStr.append("> ?os.\n");
|
---|
[26] | 819 | queryStr.append("}");
|
---|
| 820 | } else {
|
---|
| 821 | queryStr.append("?os rdf:type <");
|
---|
| 822 | queryStr.append(startClassURI);
|
---|
| 823 | queryStr.append(">.\n");
|
---|
| 824 | queryStr.append("?is rdf:type <");
|
---|
| 825 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 826 | queryStr.append(">.\n");
|
---|
[42] | 827 | queryStr.append("{?is <");
|
---|
| 828 | queryStr.append(classLink.getPropertyURI());
|
---|
| 829 | queryStr.append("> ?os.}\n");
|
---|
[26] | 830 | queryStr.append("UNION\n");
|
---|
[42] | 831 | queryStr.append("{?os <");
|
---|
| 832 | queryStr.append(classLink.getPropertyURI());
|
---|
| 833 | queryStr.append("> ?is.}\n");
|
---|
[26] | 834 | queryStr.append("}");
|
---|
| 835 | }
|
---|
| 836 | }
|
---|
| 837 | System.out.println(queryStr.toString());
|
---|
| 838 |
|
---|
| 839 | Query query = QueryFactory.create(queryStr.toString());
|
---|
| 840 | QueryExecution qexec = QueryExecutionFactory.sparqlService(
|
---|
| 841 | endpointURI, query);
|
---|
| 842 |
|
---|
| 843 | ResultSet results = qexec.execSelect();
|
---|
| 844 | if (results.hasNext()) {
|
---|
| 845 | QuerySolution sol = results.next();
|
---|
| 846 | Literal lit = sol.getLiteral("numOfLinks");
|
---|
| 847 | if (lit != null) {
|
---|
| 848 | int numOfLinks = lit.getInt();
|
---|
| 849 | classLink.setNumOfLinks(numOfLinks);
|
---|
| 850 | }
|
---|
[46] | 851 | lit = sol.getLiteral("numOfLinkedInstances");
|
---|
| 852 | if (lit != null) {
|
---|
| 853 | int numOfLinkedInstances = lit.getInt();
|
---|
| 854 | classLink.setNumOfLinkedInstances(numOfLinkedInstances);
|
---|
| 855 | }
|
---|
| 856 | lit = sol.getLiteral("numOfOriginInstances");
|
---|
| 857 | if (lit != null) {
|
---|
| 858 | int numOfOriginInstances = lit.getInt();
|
---|
| 859 | classLink.setNumOfOriginInstances(numOfOriginInstances);
|
---|
| 860 | }
|
---|
[49] | 861 | lit = sol.getLiteral("numOfOriginClassInstances");
|
---|
| 862 | if (lit != null) {
|
---|
| 863 | int numOfOriginClassInstances = lit.getInt();
|
---|
| 864 | classLink.setNumOfOriginClassInstances(numOfOriginClassInstances);
|
---|
| 865 | }
|
---|
| 866 | lit = sol.getLiteral("numOfLinkedClassInstances");
|
---|
| 867 | if (lit != null) {
|
---|
| 868 | int numOfLinkedClassInstances = lit.getInt();
|
---|
| 869 | classLink.setNumOfLinkedClassInstances(numOfLinkedClassInstances);
|
---|
| 870 | }
|
---|
[26] | 871 | }
|
---|
| 872 | qexec.close();
|
---|
[49] | 873 |
|
---|
| 874 | // count instances
|
---|
| 875 | queryStr = new StringBuffer();
|
---|
| 876 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 877 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 878 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 879 |
|
---|
| 880 | queryStr.append("SELECT (COUNT(?ics) AS ?numOfOriginClassInstances) \n");
|
---|
| 881 | if (graphURIs != null) {
|
---|
| 882 | for (String graphURI : graphURIs) {
|
---|
| 883 | queryStr.append("FROM <");
|
---|
| 884 | queryStr.append(graphURI);
|
---|
| 885 | queryStr.append(">\n");
|
---|
| 886 | }
|
---|
| 887 | }
|
---|
| 888 |
|
---|
| 889 | queryStr.append("WHERE{\n");
|
---|
| 890 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 891 | queryStr.append("?ics rdf:type <");
|
---|
| 892 | queryStr.append(startClassURI);
|
---|
| 893 | queryStr.append(">.\n");
|
---|
| 894 | queryStr.append("}");
|
---|
| 895 | } else {
|
---|
| 896 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 897 | queryStr.append("?ics rdf:type <");
|
---|
| 898 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 899 | queryStr.append(">.\n");
|
---|
| 900 | queryStr.append("}");
|
---|
| 901 | } else {
|
---|
| 902 | queryStr.append("?ics rdf:type <");
|
---|
| 903 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 904 | queryStr.append(">.\n");
|
---|
| 905 | queryStr.append("}");
|
---|
| 906 | }
|
---|
| 907 | }
|
---|
| 908 |
|
---|
| 909 | System.out.println(queryStr.toString());
|
---|
| 910 |
|
---|
| 911 | query = QueryFactory.create(queryStr.toString());
|
---|
| 912 | qexec = QueryExecutionFactory.sparqlService(
|
---|
| 913 | endpointURI, query);
|
---|
| 914 |
|
---|
| 915 | results = qexec.execSelect();
|
---|
| 916 | if (results.hasNext()) {
|
---|
| 917 | QuerySolution sol = results.next();
|
---|
| 918 | Literal lit = null;
|
---|
| 919 | lit = sol.getLiteral("numOfOriginClassInstances");
|
---|
| 920 | if (lit != null) {
|
---|
| 921 | int numOfOriginClassInstances = lit.getInt();
|
---|
| 922 | classLink.setNumOfOriginClassInstances(numOfOriginClassInstances);
|
---|
| 923 | }
|
---|
| 924 | }
|
---|
| 925 | qexec.close();
|
---|
| 926 |
|
---|
| 927 | // count instances
|
---|
| 928 | queryStr = new StringBuffer();
|
---|
| 929 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 930 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 931 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 932 |
|
---|
| 933 | queryStr.append("SELECT (COUNT(?ocs) AS ?numOfLinkedClassInstances) \n");
|
---|
| 934 | if (graphURIs != null) {
|
---|
| 935 | for (String graphURI : graphURIs) {
|
---|
| 936 | queryStr.append("FROM <");
|
---|
| 937 | queryStr.append(graphURI);
|
---|
| 938 | queryStr.append(">\n");
|
---|
| 939 | }
|
---|
| 940 | }
|
---|
| 941 |
|
---|
| 942 | queryStr.append("WHERE{\n");
|
---|
| 943 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 944 | queryStr.append("?ocs rdf:type <");
|
---|
| 945 | queryStr.append(classLink.getLinkedClassURI());
|
---|
| 946 | queryStr.append(">.\n");
|
---|
| 947 | queryStr.append("}");
|
---|
| 948 | } else {
|
---|
| 949 | if (classLink.getDirection() == Direction.forward) {
|
---|
| 950 | queryStr.append("?ocs rdf:type <");
|
---|
| 951 | queryStr.append(startClassURI);
|
---|
| 952 | queryStr.append(">.\n");
|
---|
| 953 | queryStr.append("}");
|
---|
| 954 | } else {
|
---|
| 955 | queryStr.append("?ocs rdf:type <");
|
---|
| 956 | queryStr.append(startClassURI);
|
---|
| 957 | queryStr.append(">.\n");
|
---|
| 958 | queryStr.append("}");
|
---|
| 959 | }
|
---|
| 960 | }
|
---|
| 961 |
|
---|
| 962 | System.out.println(queryStr.toString());
|
---|
| 963 |
|
---|
| 964 | query = QueryFactory.create(queryStr.toString());
|
---|
| 965 | qexec = QueryExecutionFactory.sparqlService(
|
---|
| 966 | endpointURI, query);
|
---|
| 967 |
|
---|
| 968 | results = qexec.execSelect();
|
---|
| 969 | if (results.hasNext()) {
|
---|
| 970 | QuerySolution sol = results.next();
|
---|
| 971 | Literal lit = null;
|
---|
| 972 | lit = sol.getLiteral("numOfLinkedClassInstances");
|
---|
| 973 | if (lit != null) {
|
---|
| 974 | int numOfLinkedClassInstances = lit.getInt();
|
---|
| 975 | classLink.setNumOfLinkedClassInstances(numOfLinkedClassInstances);
|
---|
| 976 | }
|
---|
| 977 | }
|
---|
| 978 | qexec.close();
|
---|
| 979 |
|
---|
[26] | 980 | }
|
---|
| 981 | return classLinks;
|
---|
| 982 | }
|
---|
| 983 |
|
---|
[49] | 984 |
|
---|
[36] | 985 | public SClass[] countInstances(String[] graphURIs, SClass[] classes)
|
---|
| 986 | throws Exception {
|
---|
| 987 | if (classes == null || classes.length == 0) {
|
---|
[31] | 988 | return new SClass[0];
|
---|
| 989 | }
|
---|
| 990 | HashMap<String, SClass> classMap = new HashMap<String, SClass>();
|
---|
[36] | 991 | for (SClass sc : classes) {
|
---|
[31] | 992 | classMap.put(sc.getClassURI(), sc);
|
---|
| 993 | }
|
---|
| 994 | StringBuffer queryStr = new StringBuffer();
|
---|
| 995 | queryStr.append("PREFIX owl: <http://www.w3.org/2002/07/owl#>\n");
|
---|
| 996 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
|
---|
| 997 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
|
---|
| 998 | queryStr.append("SELECT DISTINCT ?cls (COUNT(?is) AS ?numOfInstances)\n");
|
---|
| 999 | if (graphURIs != null) {
|
---|
| 1000 | for (String graphURI : graphURIs) {
|
---|
| 1001 | queryStr.append("FROM <");
|
---|
| 1002 | queryStr.append(graphURI);
|
---|
| 1003 | queryStr.append(">\n");
|
---|
| 1004 | }
|
---|
| 1005 | }
|
---|
| 1006 | queryStr.append("WHERE{\n");
|
---|
| 1007 | queryStr.append(" ?is rdf:type ?cls.\n");
|
---|
| 1008 | queryStr.append(" FILTER(?cls IN (");
|
---|
| 1009 | boolean f = false;
|
---|
| 1010 | Set<String> clsSet = classMap.keySet();
|
---|
| 1011 | for (String clsURI : clsSet) {
|
---|
| 1012 | if (f) {
|
---|
| 1013 | queryStr.append(", ");
|
---|
| 1014 | }
|
---|
| 1015 | f = true;
|
---|
| 1016 | queryStr.append("<");
|
---|
| 1017 | queryStr.append(clsURI);
|
---|
| 1018 | queryStr.append(">");
|
---|
| 1019 | }
|
---|
| 1020 | queryStr.append("))\n");
|
---|
| 1021 | queryStr.append("} GROUP BY ?cls");
|
---|
| 1022 |
|
---|
| 1023 | System.out.println(queryStr.toString());
|
---|
| 1024 |
|
---|
| 1025 | Query query = QueryFactory.create(queryStr.toString());
|
---|
| 1026 | QueryExecution qexec = QueryExecutionFactory.sparqlService(endpointURI,
|
---|
| 1027 | query);
|
---|
| 1028 |
|
---|
| 1029 | ResultSet results = qexec.execSelect();
|
---|
| 1030 | for (; results.hasNext();) {
|
---|
| 1031 | QuerySolution sol = results.next();
|
---|
| 1032 | String uri = sol.getResource("cls").getURI();
|
---|
| 1033 | SClass sc = classMap.get(uri);
|
---|
| 1034 | Literal lit = sol.getLiteral("numOfInstances");
|
---|
| 1035 | if (lit != null) {
|
---|
| 1036 | int numOfInstances = lit.getInt();
|
---|
| 1037 | sc.setNumOfInstances(numOfInstances);
|
---|
| 1038 | }
|
---|
| 1039 | }
|
---|
| 1040 | qexec.close();
|
---|
[36] | 1041 |
|
---|
[31] | 1042 | return classes;
|
---|
| 1043 | }
|
---|
| 1044 |
|
---|
[2] | 1045 | }
|
---|