Index: /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/AcquiredStructureAnalyzer.java
===================================================================
--- /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/AcquiredStructureAnalyzer.java (revision 127)
+++ /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/AcquiredStructureAnalyzer.java (revision 128)
@@ -38,17 +38,17 @@
 		AcquiredStructureAnalyzer impl 
 			= new AcquiredStructureAnalyzer(jmGene.getEndpointURI(), jmGene.getGraphURIs(), jmGene.getModel());
-		System.out.println("--------------------------");
-		SClass[] scs = impl.getOWLClasses(null, null, null, true);
-		System.out.println("list classes:---------------");
-		for(SClass sc: scs){
-			System.out.println(sc.toString());
-		}
-		System.out.println("--------------------------");
-		
-//		ClassLink[] cls = impl.getNextClass(null,"http://purl.org/allie/ontology/201108#ShortForm",100,true );
-//		for(ClassLink cl: cls){
-//			System.out.println(cl.toString());
+//		System.out.println("--------------------------");
+//		SClass[] scs = impl.getOWLClasses(null, null, null, true);
+//		System.out.println("list classes:---------------");
+//		for(SClass sc: scs){
+//			System.out.println(sc.toString());
 //		}
 //		System.out.println("--------------------------");
+		
+		ClassLink[] cls = impl.getNextClass(null,"http://www.biopax.org/release/biopax-level3.owl#Protein",100,true );
+		for(ClassLink cl: cls){
+			System.out.println(cl.toString());
+		}
+		System.out.println("--------------------------");
 		
 	}
@@ -180,5 +180,5 @@
 
 		// SELECT
-		queryStr.append("SELECT DISTINCT ?indPropCat ?c ?dat ?d ?p ?numLnkInsStart ?numLnkInsEnd ?numInsDom ?numInsRan ?numTriples ?isStartClsLim ?isEndClsLim\n");
+		queryStr.append("SELECT DISTINCT ?indPropCat ?c ?dat ?d ?p ?numLnkInsStart ?numLnkInsEnd ?numInsDom ?numInsRan ?numTriples\n");
 
 //		if (targetGraphURIs != null) {
@@ -192,5 +192,5 @@
 		queryStr.append("WHERE{\n");
 		queryStr.append(" ?cr <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.RESOURCE_SB_CLASS_RELATION).append(">. \n");
-		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append("> ?cr. \n");
+		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_SB_CLASS_RELATION).append("> ?cr. \n");
 		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_VOID_PROPERTY).append("> ?p. \n");
 		
@@ -225,5 +225,5 @@
 		queryStr.append("}\n");
 		
-		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append(">. \n");
+//		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append(">. \n");
 		queryStr.append(" ?propPart <").append(URICollection.PROPERTY_SB_PROPERTY_CATEGORY).append("> ?indPropCat. \n");
 
Index: /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java
===================================================================
--- /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java (revision 118)
+++ /BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java (revision 128)
@@ -23,10 +23,12 @@
     public static void main(String[] args){
         // For Test
-        String sp = "http://data.allie.dbcls.jp/sparql";
-        String sc = "http://purl.org/allie/ontology/201108#ShortForm";
-        String ec = "http://purl.org/allie/ontology/201108#LongForm";
-        //String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
-        //String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
-        //String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+        //String sp = "http://data.allie.dbcls.jp/sparql";
+        //String sc = "http://purl.org/allie/ontology/201108#ShortForm";
+        //String ec = "http://purl.org/allie/ontology/201108#LongForm";
+
+        String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
+        String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
+        String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+
         //String sp = "http://www.ebi.ac.uk/rdf/services/biosamples/sparql";
         //String sc = "http://rdf.ebi.ac.uk/terms/biosd/Sample";