チェンジセット 128 : BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL

更新日時:

2014/07/22 18:47:53 (10 年 前)

更新者:

nori

ログメッセージ:

VOID対応版

パス:

BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL

ファイル:

• AcquiredStructureAnalyzer.java (変更) (4 diff)
• QueryPathGenerator.java (変更) (1 diff)

BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/AcquiredStructureAnalyzer.java

@@ -38 +38 @@
                 AcquiredStructureAnalyzer impl 
                         = new AcquiredStructureAnalyzer(jmGene.getEndpointURI(), jmGene.getGraphURIs(), jmGene.getModel());
-                System.out.println("--------------------------");
-                SClass[] scs = impl.getOWLClasses(null, null, null, true);
-                System.out.println("list classes:---------------");
-                for(SClass sc: scs){
-                        System.out.println(sc.toString());
-                }
-                System.out.println("--------------------------");
-                
-//              ClassLink[] cls = impl.getNextClass(null,"http://purl.org/allie/ontology/201108#ShortForm",100,true );
-//              for(ClassLink cl: cls){
-//                      System.out.println(cl.toString());
+//              System.out.println("--------------------------");
+//              SClass[] scs = impl.getOWLClasses(null, null, null, true);
+//              System.out.println("list classes:---------------");
+//              for(SClass sc: scs){
+//                      System.out.println(sc.toString());
 //              }
 //              System.out.println("--------------------------");
+                
+                ClassLink[] cls = impl.getNextClass(null,"http://www.biopax.org/release/biopax-level3.owl#Protein",100,true );
+                for(ClassLink cl: cls){
+                        System.out.println(cl.toString());
+                }
+                System.out.println("--------------------------");
                 
         }
@@ -180 +180 @@
 
                 // SELECT
-                queryStr.append("SELECT DISTINCT ?indPropCat ?c ?dat ?d ?p ?numLnkInsStart ?numLnkInsEnd ?numInsDom ?numInsRan ?numTriples ?isStartClsLim ?isEndClsLim\n");
+                queryStr.append("SELECT DISTINCT ?indPropCat ?c ?dat ?d ?p ?numLnkInsStart ?numLnkInsEnd ?numInsDom ?numInsRan ?numTriples\n");
 
 //              if (targetGraphURIs != null) {
@@ -192 +192 @@
                 queryStr.append("WHERE{\n");
                 queryStr.append(" ?cr <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.RESOURCE_SB_CLASS_RELATION).append(">. \n");
-                queryStr.append(" ?propPart <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append("> ?cr. \n");
+                queryStr.append(" ?propPart <").append(URICollection.PROPERTY_SB_CLASS_RELATION).append("> ?cr. \n");
                 queryStr.append(" ?propPart <").append(URICollection.PROPERTY_VOID_PROPERTY).append("> ?p. \n");
                 
@@ -225 +225 @@
                 queryStr.append("}\n");
                 
-                queryStr.append(" ?propPart <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append(">. \n");
+//              queryStr.append(" ?propPart <").append(URICollection.PROPERTY_RDF_TYPE).append("> <").append(URICollection.PROPERTY_VOID_PROPERTY_PARTITION).append(">. \n");
                 queryStr.append(" ?propPart <").append(URICollection.PROPERTY_SB_PROPERTY_CATEGORY).append("> ?indPropCat. \n");
 

BH13SPARQLBuilder/src/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java

@@ -23 +23 @@
     public static void main(String[] args){
         // For Test
-        String sp = "http://data.allie.dbcls.jp/sparql";
-        String sc = "http://purl.org/allie/ontology/201108#ShortForm";
-        String ec = "http://purl.org/allie/ontology/201108#LongForm";
-        //String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
-        //String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
-        //String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+        //String sp = "http://data.allie.dbcls.jp/sparql";
+        //String sc = "http://purl.org/allie/ontology/201108#ShortForm";
+        //String ec = "http://purl.org/allie/ontology/201108#LongForm";
+
+        String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
+        String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
+        String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+
         //String sp = "http://www.ebi.ac.uk/rdf/services/biosamples/sparql";
         //String sc = "http://rdf.ebi.ac.uk/terms/biosd/Sample";