チェンジセット 145 : SPARQLBuilderWWW/src/java/org/biohackathon

更新日時:

2014/09/11 15:46:26 (10 年 前)

更新者:

atsuko

ログメッセージ:

reactome で path 選択まで可

パス:

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL

ファイル:

• OWLClassGraph.java (変更) (1 diff)
• QueryPathGenerator.java (変更) (3 diff)

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java

@@ -109 +109 @@
                               continue;
                           }
-                      }                      
+                      }
+                      
                       nextlp.add(new LinkAndPath(classLinks[j], crrpath, crrlp.classLink.getLinkedClassURI(), false));
                   }

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java

@@ -27 +27 @@
         //String ec = "http://purl.org/allie/ontology/201108#LongForm";
 
-        //String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
-        //String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
-        //String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+        String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
+        String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
+        String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
 
-        String sp = "http://www.ebi.ac.uk/rdf/services/reactome/sparql";
         //String sp = "http://www.ebi.ac.uk/rdf/services/biosamples/sparql";
         //String sc = "http://rdf.ebi.ac.uk/terms/biosd/Sample";
@@ -43 +42 @@
         //QueryPathGenerator qpg = new QueryPathGenerator(sp, "c:\\cdata");
         QueryPathGenerator qpg1 = new QueryPathGenerator(sp, "cdata/");
-        String[] elist = qpg1.factory.getEndpointURIList();
-        qpg1.setSPARQLendpoint(sp);
-        SClass[] cl = qpg1.getClasses(null);
-        System.out.println("end");
-        /*
+        //SClass[] cl = qpg.getClasses(null);
+        
         long start1 = System.currentTimeMillis();
         Path[] path1 = qpg1.getPaths(sc, ec, false);
@@ -63 +59 @@
         System.out.println(path1.length);
         System.out.println(path2.length);
-                */
     }