Index: SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java
===================================================================
--- SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java (revision 135)
+++ SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java (revision 145)
@@ -109,5 +109,6 @@
                               continue;
                           }
-                      }                      
+                      }
+                      
                       nextlp.add(new LinkAndPath(classLinks[j], crrpath, crrlp.classLink.getLinkedClassURI(), false));
                   }
Index: SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java
===================================================================
--- SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java (revision 135)
+++ SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java (revision 145)
@@ -27,9 +27,8 @@
         //String ec = "http://purl.org/allie/ontology/201108#LongForm";
 
-        //String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
-        //String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
-        //String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
+        String sp = "http://www.ebi.ac.uk/rdf/services/chembl/sparql";
+        String sc = "http://rdf.ebi.ac.uk/terms/chembl#Enzyme";
+        String ec = "http://rdf.ebi.ac.uk/terms/chembl#Activity";
 
-        String sp = "http://www.ebi.ac.uk/rdf/services/reactome/sparql";
         //String sp = "http://www.ebi.ac.uk/rdf/services/biosamples/sparql";
         //String sc = "http://rdf.ebi.ac.uk/terms/biosd/Sample";
@@ -43,9 +42,6 @@
         //QueryPathGenerator qpg = new QueryPathGenerator(sp, "c:\\cdata");
         QueryPathGenerator qpg1 = new QueryPathGenerator(sp, "cdata/");
-        String[] elist = qpg1.factory.getEndpointURIList();
-        qpg1.setSPARQLendpoint(sp);
-        SClass[] cl = qpg1.getClasses(null);
-        System.out.println("end");
-        /*
+        //SClass[] cl = qpg.getClasses(null);
+        
         long start1 = System.currentTimeMillis();
         Path[] path1 = qpg1.getPaths(sc, ec, false);
@@ -63,5 +59,4 @@
         System.out.println(path1.length);
         System.out.println(path2.length);
-                */
     }