チェンジセット 228 : SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL

更新日時:

2014/12/30 22:36:45 (11 年 前)

更新者:

atsuko

ログメッセージ:

データ増加に伴い効率性を多少向上

パス:

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL

ファイル:

• OWLClassGraph.java (変更) (3 diff)
• QueryPathGenerator.java (変更) (1 diff)

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java

@@ -14 +14 @@
     //String startClass;
     //String endClass;
-    int nsteps = 5;
+    int nsteps = 4;
     int limit = 100;
     int th = 1;
@@ -77 +77 @@
 */    
 
+    public OWLClassGraph(){
+        super();
+        nodeType = new LinkedList<String>();
+        //setClassGraph(rdfsa);
+        //connectionTable = createConnectionTable();
+    }
+    
+    
     public OWLClassGraph(RDFSchemaAnalyzer rdfsa){
         super();
         nodeType = new LinkedList<String>();
-        setClassGraph(rdfsa);
-        connectionTable = createConnectionTable();
+        //setClassGraph(rdfsa);
+        //connectionTable = createConnectionTable();
     }
     
@@ -376 +384 @@
        }       
    }
+
+    public void setPartClassGraph(RDFSchemaAnalyzer rdfsa, String startClass){
+        // setNodes
+        SClass[] classes = null;
+        try{
+           classes = rdfsa.getOWLClasses(null, null, null, true);
+        }catch(Exception e){
+           System.err.println(e); return;
+        }
+        for (int i = 0 ; i < classes.length; i++){
+           addNode(classes[i].getClassURI());
+           nodeType.add("class");
+        }
+        int nedge = 0;
+        Integer snode = labelednodes.get(startClass);
+        Set<Integer> nodes = new HashSet<Integer>();
+        nodes.add(snode);
+        Set<Integer> visited = new HashSet<Integer>();
+        for (int i = 0 ; i < nsteps; i++ ){
+            Iterator<Integer> nit = nodes.iterator();
+            Set<Integer> nextnodes = new HashSet<Integer>();
+            while ( nit.hasNext() ){
+                Integer crr = nit.next();
+                visited.add(crr);
+                try{
+                    ClassLink[] classLinks = rdfsa.getNextClass(null, labels.get(crr), limit, true);
+                    for (int j = 0 ; j < classLinks.length; j++){
+                        Integer nn = labelednodes.get(classLinks[j].getLinkedClassURI());
+                        if ( !visited.contains(nn) ){
+                            nextnodes.add(nn);
+                        }
+                        if ( nn != null ){
+                            addEdge(crr, nn, classLinks[j]);
+                        /*
+                        }else{
+                            nn = labelednodes.get(classLinks[j].getLinkedLiteralDatatypeURI());
+                            if ( nn == null ){
+                                addNode(classLinks[j].getLinkedLiteralDatatypeURI());
+                                n = nodeType.size();
+                                nodeType.add("literal");
+                            }
+                            addEdge(i, n, classLinks[j]);
+                            /*
+                            ClassLink rev = new ClassLink( classLinks[j].getPropertyURI(),
+                               //classLinks[j].getLinkedClassURI(),
+                               classes[i].getClassURI(),
+                               classLinks[j].getLinkedLiteralDatatypeURI(),
+                               classLinks[j].getDirection(), classLinks[j].getNumOfLinks(), 
+                               classLinks[j].getNumOfOriginInstances(), classLinks[j].getNumOfLinkedInstances(),
+                               classLinks[j].getNumOfOriginClassInstances(), classLinks[j].getNumOfLinkedClassInstances(),
+                               classLinks[j].isDomainClassLimitedQ(), classLinks[j].isRangeClassLimitedQ() );
+                            rev.setDirection(Direction.reverse);
+                            addEdge(n, i, rev);
+                        */     
+                        }
+                    }
+                }catch(Exception e){
+                    e.printStackTrace();
+                }
+            }
+            nodes = nextnodes;
+        }
+    }
    
    private ArrayList<HashSet<Integer>> createConnectionTable(){

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/QueryPathGenerator.java

@@ -83 +83 @@
             setOWLClassGraph();
         }
+        graph.setPartClassGraph(analyzer, startClass);
         return graph.getPaths(startClass, endClass);
+        //return graph.getPaths(startClass, endClass, analyzer);
         //return graph.getPaths_old(analyzer, true, startClass, endClass);
     }