^[case1] PREFIX : SELECT ?x WHERE { ?x a :Taxon . } limit 300 offset 100000 ^[case2] PREFIX : SELECT ?x WHERE { ?x a :Taxon . } limit 300 offset 200000 ^[case3] PREFIX : SELECT ?x WHERE { ?x a :Taxon . } limit 300 offset 300000 ^[case4] PREFIX : PREFIX rdfs: SELECT ?x ?y WHERE { ?x a :Taxon . ?x :scientificName ?y . ?x rdfs:subClassOf } ^[case5] PREFIX : SELECT ?protein WHERE { ?protein a :Protein . ?protein :mnemonic "A4_HUMAN" } ^[case6] PREFIX : PREFIX rdfs: PREFIX db: SELECT ?protein WHERE { ?protein a :Protein . ?protein rdfs: seeAlso ?db . ?db :database db:PDB } ^[case7] PREFIX : PREFIX skos: SELECT ?protein ?name WHERE { ?protein a :Protein . ?protein :recommendedName ?nameH . ?nameH :fullName ?name . ?protein :encodedBy ?gene . ?gene skos:prefLabel ?text . FILTER REGEX(?text, "DNA") } ^[case8] PREFIX : SELECT ?protein ?begin ?end WHERE { ?protein a :Protein . ?protein :annotation ?annotation . ?annotation a :Transmembrane_Annotation . ?annotation :range ?range . ?range :begin ?begin . ?range :end ?end } limit 200 offset 20000 ^[case9] PREFIX : SELECT ?protein ?begin ?end WHERE { ?protein a :Protein . ?protein :annotation ?annotation . ?annotation a :Transmembrane_Annotation . ?annotation :range ?range . ?range :begin ?begin . ?range :end ?end } limit 200 offset 30000 ^[case10] PREFIX : PREFIX rdfs: SELECT ?related WHERE { ?protein a :Protein . ?protein :classifiedWith . ?protein rdfs:seeAlso ?related } ^[case11] PREFIX : PREFIX rdfs: PREFIX skos: SELECT ?name ?text WHERE { ?protein a :Protein . ?protein :encodedBy ?gene . ?gene skos:prefLabel ?name . ?protein :organism . ?protein :annotation ?annotation . ?annotation a :Disease_Annotation . ?annotation rdfs:co mment ?text } limit 300 ^[case12] PREFIX : PREFIX rdf: PREFIX rdfs: SELECT ?protein ?aa WHERE { ?protein a :Protein . ? protein :organism ?organism. ?organism rdfs:subClassOf . ?protein :sequence ?s . ?s rdf:value ?aa . } limit 200 ^[case13] PREFIX : SELECT ?protein ?x WHERE { ?protein a :Protein . ?protein :modified "2011-11-16". } limit 200 ^[case14] PREFIX : ASK WHERE { ?protein a :Protein . ?protein :modified "2011-11-16". } ^[case15] PREFIX : PREFIX taxon: CONSTRUCT {?protein a :HumanProtein .} WHERE { ?protein a :Protein . ?protein :organism taxon:9606 . } ^[case16] PREFIX : CONSTRUCT {?x a :Concept . } WHERE { ?x a :Taxon . } ^[case17] DESCRIBE ^[case18] PREFIX taxon: DESCRIBE taxon:9606 FROM