* [#Configure　4store　配置]

* [#load Load performance] 
    * [#allieload Allie upload]
    * [#pdbjload PDBJ upload]
    * [#uniprotload Uniprot upload]
    * [#ddbjload DDBJ upload]
* [#Sparql  Sparql query performance] 
    * [#alliequery Allie query ]
    * [#pdbjquery PDBJ query ]
    * [#uniprotquery Uniprot query ]
    * [#ddbjquery DDBJ query ]


=== 4store 配置 === #Configure


{{{
$ cd $4STORE_HOME/bin
$ ./4s-backend-setup allie
$ ./4s-backend allie
./4s-import -v allie --format ntriples datapath --model http://myURI.com
}}}

Configuration consideration (refer to [http://4store.org/]):[[BR]]

 
Here specify the cluster and segmentation values: [[BR]]

4s-backend-setup --node 0 --cluster 1 --segments 4 demo

The number of segments should be a power of 2, parallelisation depends on segmentation. As a rule of thumb try a power of 2 close to twice as many segments as there are physical CPUs or CPU cores on the system, but depending on the workload you may find less or more work better. 

=== Load Performance === #load
		

=== Allie upload === #allieload 
 
Approach 1: Default setting (2 segments)

           About 12 minutes

Approach 2: 8 segments

          About 13 minutes

          Segment setting makes little difference.

=== PDBJ upload === #pdbjload 
       vm.swapniess=60:    6408 minutes(4.45 days)
       vm.swapniess=10:    4738 minutes(4.45 days)

||loadtime|| Cell Cycle Ontology || Allie || PDBj ||
|| 1st time || 2mins || 12mins ||4738 mins ||
|| 2nd time || 2mins || 12mins ||4930 mins  || 
|| average ||2mins || 12 mins || 4834 mins || 


=== Sparql query performance === #Sparql

=== Cell cycle query === #cellquery 


||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||
||case1 ||54	||53	||55	||65||	62||
||case2 ||16	||17||	17||	22||	23||
||case3 ||2244	||1229	||1246	||1224||	1243||
||case4 ||13||	13	||12||	14||	15||
||case5 ||34	||34	||34||	33||	31||
||case6 ||68	||67||	69||	65||	55||
||case7 ||22	||21||	21||	22||	25||
||case8 ||67||	67||	67||	66||	68||
||case9 ||2035||	2035||	2033||	2036	||2036||
||case10 ||7||	8||	8||	8||	6||
||case11 ||6||	6||	6||	6||	6||
||case12 ||1064||	1063||	2063||	2063	||2062||
||case13||9||	8||	9||	8||	8||
||case14 ||8||	8||	8||	7||	6||
||case15 ||*||*||*||*||*||
||case16 ||X||X||	X||	X||	X||
||case17 ||X||X||	X||	X||	X||
||case18 ||X||X||	X||	X||	X||
||case19 ||15||	16	||15	||16||	15||

X: parser error: syntax error, unexpected COUNT, expecting '(' or '?' or '$' or '*' on line 4.

*: No response within 2 hours.

=== Allie query === #alliequery 


||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||
||case1 ||X||X||X||X||X||
||case2 ||220||	225||	212	||222	||215||
||case3 ||X||X||X||X||X||
||case4 ||X||X||X||X||X||
||case5 ||68245||	64945	||67070||	67703||	60794||

X: Do not suppot lang() function.


=== PDBJ query === #pdbjquery 

||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||
||case1 ||3639 ||	1024 	||1026||	1024||	1026||
||case2 ||1024 ||	2027||	2024||	1027||	1024||
||case3 ||97728 ||	131||	134||	128||	134||
||case4 ||2027||	1023||	2027||	2024|