| バージョン 5 (更新者: wu, 12 年 前) |
|---|
Load Performance
Please refer to http://kiban.dbcls.jp/togordf/wiki/OwlimSe4.3 for the detailed load approach and configuration introduction.
Configuration:
-Xmx60G -Xms30G -Druleset=empty -Dentity-index-size=800000000 -Dcache-memory=20000m -Dtuple-index-memory=20000m -DenablePredicateList=false -Dpredicate-memory=0 -Dfts-memory=0 -DftsIndexPolicy=never -Denable-context-index=false -Din-memory-literal-properties=false -Dtransaction-mode=fast -Dtransaction-isolation=false -Drepository-type=file-repository
and vm.swappiness=10
We noticed that for Allie it made no too much difference to spllit the whole file into small file set or adjust the configuration setting.
| loadtime | Cell Cycle Ontology | Allie |
| 1st time | 3mins | 22mins |
| 2nd time | 3mins | 22mins |
| average | 3mins | 22mins |
Sparql query performance
Here we did the query evaluation by executing the whole query mix (composed of the query sequence) five times in each triple store, removed the highest one and then got the average time cost of the other four queries.
Cell cycle query
| Query\time(ms) | time 1 | time 2 | time 3 | time 4 | time 5 | avg |
| case1 | 120 | 125 | 121 | 122 | 119 | 121 |
| case2 | 10 | 9 | 9 | 8 | 8 | 9 |
| case3 | 2858 | 2833 | 2738 | 2725 | 2663 | 2740 |
| case4 | 5 | 4 | 5 | 5 | 4 | 5 |
| case5 | 149 | 148 | 150 | 150 | 151 | 149 |
| case6 | 1738 | 1782 | 1688 | 1768 | 1694 | 1722 |
| case7 | 3 | 3 | 3 | 3 | 3 | 3 |
| case8 | 38 | 45 | 37 | 41 | 41 | 39 |
| case9 | 26 | 25 | 25 | 25 | 25 | 25 |
| case10 | 1 | 1 | 0 | 1 | 0 | 1 |
| case11 | 6 | 7 | 6 | 7 | 6 | 6 |
| case12 | 47 | 47 | 46 | 47 | 46 | 47 |
| case13 | 2 | 2 | 2 | 2 | 2 | 2 |
| case14 | 1 | 1 | 1 | 1 | 1 | 1 |
| case15 | 54516 | 52675 | 52494 | 54135 | 51811 | 52779 |
| case16 | 7 | 7 | 7 | 9 | 7 | 7 |
| case17 | 5 | 4 | 5 | 4 | 4 | 4 |
| case18 | 24 | 23 | 24 | 24 | 23 | 24 |
| case19 | 17 | 17 | 17 | 17 | 16 | 17 |
Allie query
| Query\time(ms) | time 1 | time 2 | time 3 | time 4 | time 5 | avg |
| case1 | 136 | 139 | 137 | 136 | 136 | 136 |
| case2 | 1550 | 1531 | 1579 | 1544 | 1530 | 1539 |
| case3 | 1085 | 1080 | 1091 | 1083 | 1091 | 1085 |
| case4 | 28 | 28 | 29 | 29 | 31 | 29 |
| case5 | 77517 | 79261 | 81779 | 78765 | 78942 | 78621 |
Uniprot query
| Query\time(ms) | time 1 | time 2 | time 3 | time 4 | time 5 | avg |
| case1 | 2319 | 12137 | 406 | 473 | 527 | 931 |
| case2 | 6353 | 12227 | 449 | 433 | 444 | 1920 |
| case3 | 12108 | 8517 | 694 | 626 | 672 | 2627 |
| case4 | 1962 | 496 | 17 | 37 | 16 | 142 |
| case5 | 371 | 193 | 17 | 17 | 17 | 61 |
| case6 | 688632 | 79848 | 4357 | 182354 | 91786 | 89586 |
| case7 | 981995 | 72629 | 72055 | 126147 | 74689 | 86380 |
| case8 | 6527 | 677 | 676 | 656 | 687 | 674 |
| case9 | 2519 | 946 | 1051 | 1026 | 953 | 994 |
| case10 | 77283 | 1046 | 1036 | 1020 | 1110 | 1053 |
| case11 | 6925 | 50 | 51 | 48 | 50 | 50 |
| case12 | 348 | 8 | 11 | 10 | 11 | 10 |
| case13 | 36 | 7 | 9 | 9 | 9 | 9 |
| case14 | 7 | 6 | 7 | 7 | 7 | 7 |
| case15 | 92495 | 15134 | 14856 | 15268 | 14889 | 15037 |
| case16 | 39748 | 30756 | 29900 | 35012 | 32551 | 32055 |
| case17 | 4738 | 3467 | 3476 | 2815 | 1513 | 2818 |
| case18 | 10323 | 7404 | 7687 | 9865 | 9234 | 8548 |
