=== Load Performance === #load

Please refer to http://kiban.dbcls.jp/togordf/wiki/bigdata1.1.0 for the detailed load approach and configuration introduction. 

{{{
 -Xmx60G -Xms50G
}}}
and vm.swappiness=10

when setting
{{{
com.bigdata.btree.writeRetentionQueue.capacity=500000
com.bigdata.rdf.sail.BigdataSail.bufferCapacity=1000000
}}} 
as Bigdata1.1.0,
it occurred the error
{{{
ERROR: 1034      main com.bigdata.rdf.store.AbstractTripleStore.create(AbstractTripleStore.java:1679): com.bigdata.config.ConfigurationException: Must be in [2:50000]: 
}}}

Therefore we used the following parameters
{{{
com.bigdata.btree.writeRetentionQueue.capacity=50000
com.bigdata.rdf.sail.BigdataSail.bufferCapacity=1000000
}}}

||loadtime||Cell Cycle Ontology ||   Allie || PDBj  || UniProt || DDBJ ||
|| 1st time ||3mins||237mins ||1175mins(19.58hs)|| || ||
|| 2nd time ||2mins||307 mins ||1140mins(19hs) || || ||
|| average ||3mins||272mins ||1158mins(19.3hs) || || ||

Space used:

||  Endpoint     || Cell Cycle Ontology || Allie || PDBj  || UniProt || DDBJ ||
|| bigdata ||  0.78G  ||  6.2G  ||  34 G    ||      ||  ||

Uniprot:

ERROR: 743893632      main com.bigdata.Banner$1.uncaughtException(Banner.java:110): Uncaught exception in thread
java.lang.RuntimeException: Allocation size to big: 13940 > 8192: lastRootBlock=rootBlock{ rootBlock=1, challisField=1, version=3, nextOffset=154618830861, localTime=1353304142691

=== Sparql query performance === 
Here we did the query evaluation by executing the whole query mix (composed of the query sequence) five times in each triple store, removed the highest one and then got the average time cost of the other four queries. 

=== Cell cycle query === #cellquery 

||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||avg||
||case1	||306	||276	||272||	284	||294||	282||
||case2	||35	||40	||33	||33	||39||	35||
||case3	||3081	||3464||	3016	||3702||	3427||	3247||
||case4	||20	||8	||19	||18	||8||	13||
||case5	||47	||116	||48	||48	||65||	52||
||case6	||3374||	3260	||3278	||3458||	3368||	3320||
||case7	||27	||8	||19	||8||	8||	11||
||case8	||108	||94	||78	||101	||98	||93||
||case9	||59	||46	||43||	52||	47||	47||
||case10	||13	||13	||2	||13	||13	||10||
||case11	||20	||19||	21||	19||	22||	20||
||case12	||26	||28	||27	||28||	31	||27||
||case13	||14	||3||	4	||4	||9||	5||
||case14	||14	||2	||15	||3	||3	||6||
||case15	||18202	||18549	||18129	||18045	||18126||	18126||
||case19	||17	||37	||44	||39	||26||	30||


=== Allie query === #alliequery 

||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||avg||
||case1||	358||	366||	371||	375||	365||	365||
||case2	||681	||707	||689	||705	||684||	690||
||case3	||1874	||1756	||1798	||1773	||1788||	1779||
||case4	||101	||121	||89	||107	||96	||98||
||case5	||38057	||38749	||40250	||38799	||38488||	38523||


=== PDBJ query === #pdbjquery 

||Query\time(ms) ||time 1 || time 2 || time 3 ||time 4||time 5 ||avg||
||case1||	286||	190||	187||	188||	193||	190||
||case2||	15||	14||	13||	15||	14||	14||
||case3||	58||	36||	30||	37||	36||	35||
||case4||	64||	54||	57||	53||	53||	54||