バージョン 34 から バージョン 35 における更新: survey

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更新日時:
2012/07/04 11:07:50 (12 年 前)
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wu
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  • survey

    v34 v35  
    6363  * Virtuoso: 6.4 commercial 
    6464 
    65 === Data === #data       
     65=== Data === #data    
    6666 
    67 '''Cell cycle''': .rdf (RDFXML) format, 11,315,866 tripples,from [http://www.semantic-systems-biology.org/]. sparql query attachment:cell.txt . 
     67We select five real typical biological  data sets instead of synthetic data, the number of triples of which ranges from 10 Million to 8 Billion.  We summarize the query characteristics in [wiki:Query QueryCharacteristics ]. 
     68 
     69'''Cell cycle''': .rdf (RDFXML) format, 11,315,866 tripples, from [http://www.semantic-systems-biology.org/]. The Sparql query attachment:cell.txt . 
    6870 
    6971'''Allie''': .n3 format, 94,420,989 tripples, sparql query attachment:allie.txt . 
    7072 
    71 '''PDBJ''': .rdf.gz format ,589,987,335 triples, 77878 files,  from  [ftp://ftp.pdbj.org/XML/rdf/]. sparql query attachment:pdbj.txt. 
     73'''PDBJ''': .rdf.gz format, 589,987,335 triples, 77878 files,  from  [ftp://ftp.pdbj.org/XML/rdf/]. The Sparql query attachment:pdbj.txt. 
    7274 
    7375The queries in PDBJ are point queries which retrieve the relative characteristics of certain EntryID, such as 107L. Therefore their result set is small but the number of query joins is big.  
    7476 
    75 '''Uniprot''': .rdf.gz format , 4,025,881,829  triples, the 3 larger files are uniprot.rdf.gz,uniparc.rdf.gz,uniref.rdf.gz, from [ftp://ftp.uniprot.org/pub/databases/uniprot/] (the experiment used data was  2011.Nov version). sparql query attachment:uniprot.txt or [http://beta.sparql.uniprot.org/]. 
     77'''Uniprot''': .rdf.gz format , 4,025,881,829  triples, the 3 larger files are uniprot.rdf.gz,uniparc.rdf.gz,uniref.rdf.gz, from [ftp://ftp.uniprot.org/pub/databases/uniprot/] (the experiment used data was  2011.Nov version). The Sparql query attachment:uniprot.txt or [http://beta.sparql.uniprot.org/]. 
    7678 
    77 '''DDBJ''': .rdf.gz format, 7,902,743,055 triples, 330 files, from [ftp://ftp.ddbj.nig.ac.jp/ddbj_database/ddbj/]. sparql query attachment:ddbj.txt . 
     79'''DDBJ''': .rdf.gz format, 7,902,743,055 triples, 330 files, from [ftp://ftp.ddbj.nig.ac.jp/ddbj_database/ddbj/]. The Sparql query attachment:ddbj.txt . 
    7880 
    7981=== Approach === #approach