| 1 | import os, unittest, random |
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| 2 | |
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| 3 | import testlib |
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| 4 | from genetrack import conf, util, logger, scripts |
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| 5 | |
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| 6 | class ScriptTests( unittest.TestCase ): |
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| 7 | """ |
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| 8 | Testing scripts |
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| 9 | """ |
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| 10 | |
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| 11 | def test_tabs2genetrack(self): |
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| 12 | "Testing bed2genetrack transformation" |
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| 13 | from genetrack.scripts import tabs2genetrack |
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| 14 | |
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| 15 | inpfile = conf.testdata('short-data.bed', verify=True) |
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| 16 | outfile = conf.tempdata('short-data.genetrack') |
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| 17 | tabs2genetrack.transform(inpfile, outfile, format='BED') |
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| 18 | |
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| 19 | def get_suite(): |
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| 20 | "Returns the testsuite" |
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| 21 | tests = [ |
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| 22 | ScriptTests, |
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| 23 | ] |
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| 24 | |
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| 25 | return testlib.make_suite( tests ) |
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| 26 | |
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| 27 | if __name__ == '__main__': |
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| 28 | suite = get_suite() |
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| 29 | logger.disable('DEBUG') |
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| 30 | unittest.TextTestRunner(verbosity=2).run( suite ) |
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| 31 | |
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| 32 | |
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