root/galaxy-central/eggs/bx_python-0.5.0_dev_f74aec067563-py2.6-macosx-10.6-universal-ucs2.egg/EGG-INFO/SOURCES.txt @ 3

リビジョン 3, 6.2 KB (コミッタ: kohda, 14 年 前)

Install Unix tools  http://hannonlab.cshl.edu/galaxy_unix_tools/galaxy.html
行番号 
1scramble.py
2setup.cfg
3lib/psyco_full.py
4lib/bx/__init__.py
5lib/bx/_seqmapping.c
6lib/bx/binned_array.py
7lib/bx/binned_array_tests.py
8lib/bx/bitset.c
9lib/bx/bitset_builders.py
10lib/bx/bitset_tests.py
11lib/bx/bitset_utils.py
12lib/bx/filter.py
13lib/bx/gene_reader.py
14lib/bx/interval_index_file.py
15lib/bx/interval_index_file_tests.py
16lib/bx/seqmapping.py
17lib/bx/seqmapping_tests.py
18lib/bx/wiggle.py
19lib/bx/wiggle_tests.py
20lib/bx/align/__init__.py
21lib/bx/align/_core.c
22lib/bx/align/axt.py
23lib/bx/align/core.py
24lib/bx/align/lav.py
25lib/bx/align/lav_tests.py
26lib/bx/align/maf.py
27lib/bx/align/maf_tests.py
28lib/bx/align/score.py
29lib/bx/align/score_tests.py
30lib/bx/align/sitemask/__init__.py
31lib/bx/align/sitemask/_cpg.c
32lib/bx/align/sitemask/core.py
33lib/bx/align/sitemask/cpg.py
34lib/bx/align/sitemask/find_cpg.c
35lib/bx/align/sitemask/quality.py
36lib/bx/align/sitemask/sitemask_tests.py
37lib/bx/align/tools/__init__.py
38lib/bx/align/tools/chop.py
39lib/bx/align/tools/fuse.py
40lib/bx/align/tools/thread.py
41lib/bx/align/tools/tile.py
42lib/bx/arrays/__init__.py
43lib/bx/arrays/array_tree.c
44lib/bx/arrays/array_tree_tests.py
45lib/bx/arrays/bed.c
46lib/bx/arrays/wiggle.c
47lib/bx/cookbook/__init__.py
48lib/bx/cookbook/attribute.py
49lib/bx/cookbook/doc_optparse.py
50lib/bx/cookbook/progress_bar.py
51lib/bx/intervals/__init__.py
52lib/bx/intervals/cluster.c
53lib/bx/intervals/cluster_tests.py
54lib/bx/intervals/intersection.c
55lib/bx/intervals/intersection_tests.py
56lib/bx/intervals/io.py
57lib/bx/intervals/random.py
58lib/bx/intervals/operations/__init__.py
59lib/bx/intervals/operations/base_coverage.py
60lib/bx/intervals/operations/complement.py
61lib/bx/intervals/operations/concat.py
62lib/bx/intervals/operations/coverage.py
63lib/bx/intervals/operations/find_clusters.py
64lib/bx/intervals/operations/intersect.py
65lib/bx/intervals/operations/join.py
66lib/bx/intervals/operations/merge.py
67lib/bx/intervals/operations/quicksect.py
68lib/bx/intervals/operations/subtract.py
69lib/bx/intseq/__init__.py
70lib/bx/intseq/ngramcount.c
71lib/bx/misc/__init__.py
72lib/bx/misc/_seekbzip2.c
73lib/bx/misc/binary_file.py
74lib/bx/misc/cdb.py
75lib/bx/misc/cdb_tests.py
76lib/bx/misc/filecache.py
77lib/bx/misc/filecache_tests.py
78lib/bx/misc/readlengths.py
79lib/bx/misc/seekbzip2.py
80lib/bx/misc/seekbzip2_tests.py
81lib/bx/misc/seeklzop.py
82lib/bx/misc/seeklzop_tests.py
83lib/bx/motif/__init__.py
84lib/bx/motif/_pwm.c
85lib/bx/motif/pwm.py
86lib/bx/motif/pwm_tests.py
87lib/bx/motif/io/__init__.py
88lib/bx/motif/io/transfac.py
89lib/bx/motif/io/transfac_tests.py
90lib/bx/motif/logo/__init__.py
91lib/bx/phylo/__init__.py
92lib/bx/phylo/newick.py
93lib/bx/phylo/newick_tests.py
94lib/bx/phylo/phast.py
95lib/bx/phylo/phast_tests.py
96lib/bx/pwm/__init__.py
97lib/bx/pwm/_position_weight_matrix.c
98lib/bx/pwm/bed_score_aligned_pwm.py
99lib/bx/pwm/bed_score_aligned_string.py
100lib/bx/pwm/maf_select_motifs.py
101lib/bx/pwm/position_weight_matrix.py
102lib/bx/pwm/pwm_score_maf.py
103lib/bx/pwm/pwm_score_motifs.py
104lib/bx/pwm/pwm_score_positions.py
105lib/bx/pwm/pwm_tests.py
106lib/bx/seq/__init__.py
107lib/bx/seq/_nib.c
108lib/bx/seq/_twobit.c
109lib/bx/seq/core.py
110lib/bx/seq/fasta.py
111lib/bx/seq/fasta_tests.py
112lib/bx/seq/nib.py
113lib/bx/seq/nib_tests.py
114lib/bx/seq/qdna.py
115lib/bx/seq/qdna_tests.py
116lib/bx/seq/seq.py
117lib/bx/seq/seq_tests.py
118lib/bx/seq/twobit.py
119lib/bx/seq/twobit_tests.py
120lib/bx/tabular/__init__.py
121lib/bx/tabular/io.py
122lib/bx_extras/__init__.py
123lib/bx_extras/fpconst.py
124lib/bx_extras/lrucache.py
125lib/bx_extras/pstat.py
126lib/bx_extras/pyparsing.py
127lib/bx_extras/stats.py
128lib/bx_python.egg-info/PKG-INFO
129lib/bx_python.egg-info/SOURCES.txt
130lib/bx_python.egg-info/dependency_links.txt
131lib/bx_python.egg-info/not-zip-safe
132lib/bx_python.egg-info/top_level.txt
133scripts/aggregate_scores_in_intervals.py
134scripts/align_print_template.py
135scripts/axt_extract_ranges.py
136scripts/axt_to_fasta.py
137scripts/axt_to_lav.py
138scripts/axt_to_maf.py
139scripts/bed_build_windows.py
140scripts/bed_complement.py
141scripts/bed_count_by_interval.py
142scripts/bed_count_overlapping.py
143scripts/bed_coverage.py
144scripts/bed_coverage_by_interval.py
145scripts/bed_diff_basewise_summary.py
146scripts/bed_intersect.py
147scripts/bed_intersect_basewise.py
148scripts/bed_merge_overlapping.py
149scripts/bed_rand_intersect.py
150scripts/bed_subtract_basewise.py
151scripts/div_snp_table_chr.py
152scripts/find_in_sorted_file.py
153scripts/gene_fourfold_sites.py
154scripts/get_scores_in_intervals.py
155scripts/int_seqs_to_char_strings.py
156scripts/interval_count_intersections.py
157scripts/interval_join.py
158scripts/lav_to_axt.py
159scripts/lav_to_maf.py
160scripts/line_select.py
161scripts/lzop_build_offset_table.py
162scripts/mMK_bitset.py
163scripts/maf_build_index.py
164scripts/maf_chop.py
165scripts/maf_chunk.py
166scripts/maf_col_counts.py
167scripts/maf_col_counts_all.py
168scripts/maf_count.py
169scripts/maf_covered_regions.py
170scripts/maf_div_sites.py
171scripts/maf_drop_overlapping.py
172scripts/maf_extract_chrom_ranges.py
173scripts/maf_extract_ranges.py
174scripts/maf_extract_ranges_indexed.py
175scripts/maf_filter.py
176scripts/maf_filter_max_wc.py
177scripts/maf_gap_frequency.py
178scripts/maf_gc_content.py
179scripts/maf_interval_alignibility.py
180scripts/maf_limit_to_species.py
181scripts/maf_mapping_word_frequency.py
182scripts/maf_mask_cpg.py
183scripts/maf_mean_length_ungapped_piece.py
184scripts/maf_percent_columns_matching.py
185scripts/maf_percent_identity.py
186scripts/maf_print_chroms.py
187scripts/maf_print_scores.py
188scripts/maf_randomize.py
189scripts/maf_region_coverage_by_src.py
190scripts/maf_select.py
191scripts/maf_shuffle_columns.py
192scripts/maf_species_in_all_files.py
193scripts/maf_split_by_src.py
194scripts/maf_thread_for_species.py
195scripts/maf_tile.py
196scripts/maf_tile_2.py
197scripts/maf_to_axt.py
198scripts/maf_to_concat_fasta.py
199scripts/maf_to_fasta.py
200scripts/maf_to_int_seqs.py
201scripts/maf_translate_chars.py
202scripts/maf_truncate.py
203scripts/maf_word_frequency.py
204scripts/mask_quality.py
205scripts/nib_chrom_intervals_to_fasta.py
206scripts/nib_intervals_to_fasta.py
207scripts/nib_length.py
208scripts/one_field_per_line.py
209scripts/prefix_lines.py
210scripts/pretty_table.py
211scripts/qv_to_bqv.py
212scripts/random_lines.py
213scripts/table_add_column.py
214scripts/table_filter.py
215scripts/tfloc_summary.py
216scripts/ucsc_gene_table_to_intervals.py
217scripts/wiggle_to_array_tree.py
218scripts/wiggle_to_binned_array.py
219scripts/wiggle_to_chr_binned_array.py
220scripts/wiggle_to_simple.py
221src/binBits.c
222src/cluster.c
223src/pwm_utils.c
224src/bunzip/micro-bunzip.c
225src/kent/bits.c
226src/kent/common.c
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