root/galaxy-central/eggs/bx_python-0.5.0_dev_f74aec067563-py2.6-macosx-10.6-universal-ucs2.egg/bx/cookbook/__init__.py

"""
Various useful utilities, mostly taken from the ASPN Python cookbook.
"""

seq_types = type( () ), type( [] )

def flatten( *args ):
    for arg in args:
        if type( arg ) in seq_types:
            for elem in arg:
                for f in flatten( elem ): 
                    yield f
        else:
            yield arg

def cross_lists(*sets):
    """Return the cross product of the arguments"""
    wheels = map(iter, sets) 
    digits = [it.next() for it in wheels]
    while True:
        yield digits[:]
        for i in range(len(digits)-1, -1, -1):
            try:
                digits[i] = wheels[i].next()
                break
            except StopIteration:
                wheels[i] = iter(sets[i])
                digits[i] = wheels[i].next()
        else:
            break

# Cached / memoized methods

import types

def cachedmethod(function):
    return types.MethodType(Memoize(function), None)


class Memoize:
    def __init__(self,function):
        self._cache = {}
        self._callable = function
            
    def __call__(self, *args, **kwds):
        cache = self._cache
        key = self._getKey(*args,**kwds)
        try: return cache[key]
        except KeyError:
            cachedValue = cache[key] = self._callable(*args,**kwds)
            return cachedValue
    
    def _getKey(self,*args,**kwds):
        return kwds and (args, ImmutableDict(kwds)) or args    


class memoized(object):
   """Decorator that caches a function's return value each time it is called.
   If called later with the same arguments, the cached value is returned, and
   not re-evaluated.
   """
   def __init__(self, func):
      self.func = func
      self.cache = {}
   def __call__(self, *args):
      try:
         return self.cache[args]
      except KeyError:
         self.cache[args] = value = self.func(*args)
         return value
      except TypeError:
         # uncachable -- for instance, passing a list as an argument.
         # Better to not cache than to blow up entirely.
         return self.func(*args)
   def __repr__(self):
      """Return the function's docstring."""
      return self.func.__doc__


class ImmutableDict(dict):
    '''A hashable dict.'''

    def __init__(self,*args,**kwds):
        dict.__init__(self,*args,**kwds)
    def __setitem__(self,key,value):
        raise NotImplementedError, "dict is immutable"
    def __delitem__(self,key):
        raise NotImplementedError, "dict is immutable"
    def clear(self):
        raise NotImplementedError, "dict is immutable"
    def setdefault(self,k,default=None):
        raise NotImplementedError, "dict is immutable"
    def popitem(self):
        raise NotImplementedError, "dict is immutable"
    def update(self,other):
        raise NotImplementedError, "dict is immutable"
    def __hash__(self):
        return hash(tuple(self.iteritems()))