1 | <tool id="CONVERTER_fasta_to_bowtie_base_index" name="Convert FASTA to Bowtie base space Index" version="1.0.0"> |
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2 | <requirements><requirement type='package'>bowtie</requirement></requirements> |
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3 | <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> --> |
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4 | <!-- Used on the metadata edit page. --> |
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5 | <command> |
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6 | mkdir ${output.files_path} |
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7 | && bowtie-build --quiet |
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8 | -f |
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9 | $input ${output.files_path}/${output.metadata.base_name} |
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10 | </command> |
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11 | <inputs> |
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12 | <param name="input" type="data" format="fasta" label="Fasta file"/> |
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13 | </inputs> |
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14 | <outputs> |
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15 | <data name="output" format="bowtie_base_index"/> |
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16 | </outputs> |
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17 | <help> |
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18 | </help> |
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19 | </tool> |
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