1 | <tool id="CONVERTER_interval_to_coverage_0" name="Convert Genomic Intervals To COVERAGE"> |
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2 | <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> --> |
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3 | <!-- Used on the metadata edit page. --> |
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4 | <command interpreter="python">interval_to_coverage.py $input1 $output1 |
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5 | -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} |
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6 | -2 ${output1.metadata.chromCol},${output1.metadata.positionCol},${output1.metadata.forwardCol},${output1.metadata.reverseCol} |
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7 | </command> |
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8 | <inputs> |
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9 | <page> |
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10 | <param format="interval" name="input1" type="data" label="Choose intervals"/> |
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11 | </page> |
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12 | </inputs> |
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13 | <outputs> |
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14 | <data format="coverage" name="output1"/> |
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15 | </outputs> |
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16 | <help> |
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17 | </help> |
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18 | </tool> |
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