[2] | 1 | <?xml version="1.0"?> |
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| 2 | <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
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| 3 | <BlastOutput> |
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| 4 | <BlastOutput_program>blastn</BlastOutput_program> |
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| 5 | <BlastOutput_version>blastn 2.2.17 [Aug-26-2007]</BlastOutput_version> |
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| 6 | <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
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| 7 | <BlastOutput_db>Ecoli.fa</BlastOutput_db> |
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| 8 | <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID> |
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| 9 | <BlastOutput_query-def>0_0.666667</BlastOutput_query-def> |
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| 10 | <BlastOutput_query-len>30</BlastOutput_query-len> |
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| 11 | <BlastOutput_param> |
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| 12 | <Parameters> |
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| 13 | <Parameters_expect>10</Parameters_expect> |
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| 14 | <Parameters_sc-match>1</Parameters_sc-match> |
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| 15 | <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> |
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| 16 | <Parameters_gap-open>0</Parameters_gap-open> |
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| 17 | <Parameters_gap-extend>0</Parameters_gap-extend> |
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| 18 | <Parameters_filter>F</Parameters_filter> |
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| 19 | </Parameters> |
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| 20 | </BlastOutput_param> |
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| 21 | <BlastOutput_iterations> |
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| 22 | <Iteration> |
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| 23 | <Iteration_iter-num>1</Iteration_iter-num> |
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| 24 | <Iteration_query-ID>lcl|1_0</Iteration_query-ID> |
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| 25 | <Iteration_query-def>0_0.666667</Iteration_query-def> |
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| 26 | <Iteration_query-len>30</Iteration_query-len> |
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| 27 | <Iteration_hits> |
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| 28 | <Hit> |
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| 29 | <Hit_num>1</Hit_num> |
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| 30 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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| 31 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 32 | <Hit_accession>0</Hit_accession> |
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| 33 | <Hit_len>5528445</Hit_len> |
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| 34 | <Hit_hsps> |
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| 35 | <Hsp> |
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| 36 | <Hsp_num>1</Hsp_num> |
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| 37 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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| 38 | <Hsp_score>30</Hsp_score> |
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| 39 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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| 40 | <Hsp_query-from>1</Hsp_query-from> |
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| 41 | <Hsp_query-to>30</Hsp_query-to> |
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| 42 | <Hsp_hit-from>5436010</Hsp_hit-from> |
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| 43 | <Hsp_hit-to>5436039</Hsp_hit-to> |
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| 44 | <Hsp_query-frame>1</Hsp_query-frame> |
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| 45 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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| 46 | <Hsp_identity>30</Hsp_identity> |
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| 47 | <Hsp_positive>30</Hsp_positive> |
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| 48 | <Hsp_align-len>30</Hsp_align-len> |
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| 49 | <Hsp_qseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_qseq> |
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| 50 | <Hsp_hseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_hseq> |
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| 51 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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| 52 | </Hsp> |
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| 53 | </Hit_hsps> |
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| 54 | </Hit> |
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| 55 | </Iteration_hits> |
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| 56 | <Iteration_stat> |
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| 57 | <Statistics> |
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| 58 | <Statistics_db-num>1</Statistics_db-num> |
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| 59 | <Statistics_db-len>5528445</Statistics_db-len> |
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| 60 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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| 61 | <Statistics_eff-space>0</Statistics_eff-space> |
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| 62 | <Statistics_kappa>0.711</Statistics_kappa> |
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| 63 | <Statistics_lambda>1.374</Statistics_lambda> |
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| 64 | <Statistics_entropy>1.31</Statistics_entropy> |
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| 65 | </Statistics> |
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| 66 | </Iteration_stat> |
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| 67 | </Iteration> |
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| 68 | <Iteration> |
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| 69 | <Iteration_iter-num>2</Iteration_iter-num> |
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| 70 | <Iteration_query-ID>lcl|2_0</Iteration_query-ID> |
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| 71 | <Iteration_query-def>1_0.600000</Iteration_query-def> |
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| 72 | <Iteration_query-len>30</Iteration_query-len> |
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| 73 | <Iteration_hits> |
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| 74 | <Hit> |
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| 75 | <Hit_num>1</Hit_num> |
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| 76 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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| 77 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 78 | <Hit_accession>0</Hit_accession> |
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| 79 | <Hit_len>5528445</Hit_len> |
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| 80 | <Hit_hsps> |
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| 81 | <Hsp> |
---|
| 82 | <Hsp_num>1</Hsp_num> |
---|
| 83 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 84 | <Hsp_score>30</Hsp_score> |
---|
| 85 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 86 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 87 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 88 | <Hsp_hit-from>696993</Hsp_hit-from> |
---|
| 89 | <Hsp_hit-to>697022</Hsp_hit-to> |
---|
| 90 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 91 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 92 | <Hsp_identity>30</Hsp_identity> |
---|
| 93 | <Hsp_positive>30</Hsp_positive> |
---|
| 94 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 95 | <Hsp_qseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_qseq> |
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| 96 | <Hsp_hseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_hseq> |
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| 97 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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| 98 | </Hsp> |
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| 99 | </Hit_hsps> |
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| 100 | </Hit> |
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| 101 | </Iteration_hits> |
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| 102 | <Iteration_stat> |
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| 103 | <Statistics> |
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| 104 | <Statistics_db-num>1</Statistics_db-num> |
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| 105 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 106 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 107 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 108 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 109 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 110 | <Statistics_entropy>1.31</Statistics_entropy> |
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| 111 | </Statistics> |
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| 112 | </Iteration_stat> |
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| 113 | </Iteration> |
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| 114 | <Iteration> |
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| 115 | <Iteration_iter-num>3</Iteration_iter-num> |
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| 116 | <Iteration_query-ID>lcl|3_0</Iteration_query-ID> |
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| 117 | <Iteration_query-def>2_0.400000</Iteration_query-def> |
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| 118 | <Iteration_query-len>30</Iteration_query-len> |
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| 119 | <Iteration_hits> |
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| 120 | <Hit> |
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| 121 | <Hit_num>1</Hit_num> |
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| 122 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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| 123 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 124 | <Hit_accession>0</Hit_accession> |
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| 125 | <Hit_len>5528445</Hit_len> |
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| 126 | <Hit_hsps> |
---|
| 127 | <Hsp> |
---|
| 128 | <Hsp_num>1</Hsp_num> |
---|
| 129 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 130 | <Hsp_score>30</Hsp_score> |
---|
| 131 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 132 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 133 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 134 | <Hsp_hit-from>4100018</Hsp_hit-from> |
---|
| 135 | <Hsp_hit-to>4100047</Hsp_hit-to> |
---|
| 136 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 137 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 138 | <Hsp_identity>30</Hsp_identity> |
---|
| 139 | <Hsp_positive>30</Hsp_positive> |
---|
| 140 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 141 | <Hsp_qseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_qseq> |
---|
| 142 | <Hsp_hseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_hseq> |
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| 143 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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| 144 | </Hsp> |
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| 145 | </Hit_hsps> |
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| 146 | </Hit> |
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| 147 | </Iteration_hits> |
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| 148 | <Iteration_stat> |
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| 149 | <Statistics> |
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| 150 | <Statistics_db-num>1</Statistics_db-num> |
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| 151 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 152 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 153 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 154 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 155 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 156 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 157 | </Statistics> |
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| 158 | </Iteration_stat> |
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| 159 | </Iteration> |
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| 160 | <Iteration> |
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| 161 | <Iteration_iter-num>4</Iteration_iter-num> |
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| 162 | <Iteration_query-ID>lcl|4_0</Iteration_query-ID> |
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| 163 | <Iteration_query-def>3_0.566667</Iteration_query-def> |
---|
| 164 | <Iteration_query-len>30</Iteration_query-len> |
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| 165 | <Iteration_hits> |
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| 166 | <Hit> |
---|
| 167 | <Hit_num>1</Hit_num> |
---|
| 168 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 169 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 170 | <Hit_accession>0</Hit_accession> |
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| 171 | <Hit_len>5528445</Hit_len> |
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| 172 | <Hit_hsps> |
---|
| 173 | <Hsp> |
---|
| 174 | <Hsp_num>1</Hsp_num> |
---|
| 175 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 176 | <Hsp_score>30</Hsp_score> |
---|
| 177 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 178 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 179 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 180 | <Hsp_hit-from>2305844</Hsp_hit-from> |
---|
| 181 | <Hsp_hit-to>2305873</Hsp_hit-to> |
---|
| 182 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 183 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 184 | <Hsp_identity>30</Hsp_identity> |
---|
| 185 | <Hsp_positive>30</Hsp_positive> |
---|
| 186 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 187 | <Hsp_qseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_qseq> |
---|
| 188 | <Hsp_hseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_hseq> |
---|
| 189 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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| 190 | </Hsp> |
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| 191 | </Hit_hsps> |
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| 192 | </Hit> |
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| 193 | </Iteration_hits> |
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| 194 | <Iteration_stat> |
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| 195 | <Statistics> |
---|
| 196 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 197 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 198 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 199 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 200 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 201 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 202 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 203 | </Statistics> |
---|
| 204 | </Iteration_stat> |
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| 205 | </Iteration> |
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| 206 | <Iteration> |
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| 207 | <Iteration_iter-num>5</Iteration_iter-num> |
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| 208 | <Iteration_query-ID>lcl|5_0</Iteration_query-ID> |
---|
| 209 | <Iteration_query-def>4_0.766667</Iteration_query-def> |
---|
| 210 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 211 | <Iteration_hits> |
---|
| 212 | <Hit> |
---|
| 213 | <Hit_num>1</Hit_num> |
---|
| 214 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 215 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 216 | <Hit_accession>0</Hit_accession> |
---|
| 217 | <Hit_len>5528445</Hit_len> |
---|
| 218 | <Hit_hsps> |
---|
| 219 | <Hsp> |
---|
| 220 | <Hsp_num>1</Hsp_num> |
---|
| 221 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 222 | <Hsp_score>30</Hsp_score> |
---|
| 223 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 224 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 225 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 226 | <Hsp_hit-from>3457901</Hsp_hit-from> |
---|
| 227 | <Hsp_hit-to>3457930</Hsp_hit-to> |
---|
| 228 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 229 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 230 | <Hsp_identity>30</Hsp_identity> |
---|
| 231 | <Hsp_positive>30</Hsp_positive> |
---|
| 232 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 233 | <Hsp_qseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_qseq> |
---|
| 234 | <Hsp_hseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_hseq> |
---|
| 235 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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| 236 | </Hsp> |
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| 237 | </Hit_hsps> |
---|
| 238 | </Hit> |
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| 239 | </Iteration_hits> |
---|
| 240 | <Iteration_stat> |
---|
| 241 | <Statistics> |
---|
| 242 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 243 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 244 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 245 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 246 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 247 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 248 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 249 | </Statistics> |
---|
| 250 | </Iteration_stat> |
---|
| 251 | </Iteration> |
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| 252 | <Iteration> |
---|
| 253 | <Iteration_iter-num>6</Iteration_iter-num> |
---|
| 254 | <Iteration_query-ID>lcl|6_0</Iteration_query-ID> |
---|
| 255 | <Iteration_query-def>5_0.533333</Iteration_query-def> |
---|
| 256 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 257 | <Iteration_hits> |
---|
| 258 | <Hit> |
---|
| 259 | <Hit_num>1</Hit_num> |
---|
| 260 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 261 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 262 | <Hit_accession>0</Hit_accession> |
---|
| 263 | <Hit_len>5528445</Hit_len> |
---|
| 264 | <Hit_hsps> |
---|
| 265 | <Hsp> |
---|
| 266 | <Hsp_num>1</Hsp_num> |
---|
| 267 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 268 | <Hsp_score>30</Hsp_score> |
---|
| 269 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 270 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 271 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 272 | <Hsp_hit-from>1264131</Hsp_hit-from> |
---|
| 273 | <Hsp_hit-to>1264160</Hsp_hit-to> |
---|
| 274 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 275 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 276 | <Hsp_identity>30</Hsp_identity> |
---|
| 277 | <Hsp_positive>30</Hsp_positive> |
---|
| 278 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 279 | <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> |
---|
| 280 | <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> |
---|
| 281 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 282 | </Hsp> |
---|
| 283 | <Hsp> |
---|
| 284 | <Hsp_num>2</Hsp_num> |
---|
| 285 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 286 | <Hsp_score>30</Hsp_score> |
---|
| 287 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 288 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 289 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 290 | <Hsp_hit-from>1636485</Hsp_hit-from> |
---|
| 291 | <Hsp_hit-to>1636514</Hsp_hit-to> |
---|
| 292 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 293 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 294 | <Hsp_identity>30</Hsp_identity> |
---|
| 295 | <Hsp_positive>30</Hsp_positive> |
---|
| 296 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 297 | <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> |
---|
| 298 | <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> |
---|
| 299 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 300 | </Hsp> |
---|
| 301 | <Hsp> |
---|
| 302 | <Hsp_num>3</Hsp_num> |
---|
| 303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 304 | <Hsp_score>30</Hsp_score> |
---|
| 305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 306 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 307 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 308 | <Hsp_hit-from>2318694</Hsp_hit-from> |
---|
| 309 | <Hsp_hit-to>2318723</Hsp_hit-to> |
---|
| 310 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 312 | <Hsp_identity>30</Hsp_identity> |
---|
| 313 | <Hsp_positive>30</Hsp_positive> |
---|
| 314 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 315 | <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> |
---|
| 316 | <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> |
---|
| 317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 318 | </Hsp> |
---|
| 319 | <Hsp> |
---|
| 320 | <Hsp_num>4</Hsp_num> |
---|
| 321 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 322 | <Hsp_score>30</Hsp_score> |
---|
| 323 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 324 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 325 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 326 | <Hsp_hit-from>2777043</Hsp_hit-from> |
---|
| 327 | <Hsp_hit-to>2777072</Hsp_hit-to> |
---|
| 328 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 329 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 330 | <Hsp_identity>30</Hsp_identity> |
---|
| 331 | <Hsp_positive>30</Hsp_positive> |
---|
| 332 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 333 | <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> |
---|
| 334 | <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> |
---|
| 335 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 336 | </Hsp> |
---|
| 337 | </Hit_hsps> |
---|
| 338 | </Hit> |
---|
| 339 | </Iteration_hits> |
---|
| 340 | <Iteration_stat> |
---|
| 341 | <Statistics> |
---|
| 342 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 343 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 344 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 345 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 346 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 347 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 348 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 349 | </Statistics> |
---|
| 350 | </Iteration_stat> |
---|
| 351 | </Iteration> |
---|
| 352 | <Iteration> |
---|
| 353 | <Iteration_iter-num>7</Iteration_iter-num> |
---|
| 354 | <Iteration_query-ID>lcl|7_0</Iteration_query-ID> |
---|
| 355 | <Iteration_query-def>6_0.533333</Iteration_query-def> |
---|
| 356 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 357 | <Iteration_hits> |
---|
| 358 | <Hit> |
---|
| 359 | <Hit_num>1</Hit_num> |
---|
| 360 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 361 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 362 | <Hit_accession>0</Hit_accession> |
---|
| 363 | <Hit_len>5528445</Hit_len> |
---|
| 364 | <Hit_hsps> |
---|
| 365 | <Hsp> |
---|
| 366 | <Hsp_num>1</Hsp_num> |
---|
| 367 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 368 | <Hsp_score>30</Hsp_score> |
---|
| 369 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 370 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 371 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 372 | <Hsp_hit-from>1185124</Hsp_hit-from> |
---|
| 373 | <Hsp_hit-to>1185153</Hsp_hit-to> |
---|
| 374 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 375 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 376 | <Hsp_identity>30</Hsp_identity> |
---|
| 377 | <Hsp_positive>30</Hsp_positive> |
---|
| 378 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 379 | <Hsp_qseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_qseq> |
---|
| 380 | <Hsp_hseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_hseq> |
---|
| 381 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 382 | </Hsp> |
---|
| 383 | </Hit_hsps> |
---|
| 384 | </Hit> |
---|
| 385 | </Iteration_hits> |
---|
| 386 | <Iteration_stat> |
---|
| 387 | <Statistics> |
---|
| 388 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 389 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 390 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 391 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 392 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 393 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 394 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 395 | </Statistics> |
---|
| 396 | </Iteration_stat> |
---|
| 397 | </Iteration> |
---|
| 398 | <Iteration> |
---|
| 399 | <Iteration_iter-num>8</Iteration_iter-num> |
---|
| 400 | <Iteration_query-ID>lcl|8_0</Iteration_query-ID> |
---|
| 401 | <Iteration_query-def>7_0.400000</Iteration_query-def> |
---|
| 402 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 403 | <Iteration_hits> |
---|
| 404 | <Hit> |
---|
| 405 | <Hit_num>1</Hit_num> |
---|
| 406 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 407 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 408 | <Hit_accession>0</Hit_accession> |
---|
| 409 | <Hit_len>5528445</Hit_len> |
---|
| 410 | <Hit_hsps> |
---|
| 411 | <Hsp> |
---|
| 412 | <Hsp_num>1</Hsp_num> |
---|
| 413 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 414 | <Hsp_score>30</Hsp_score> |
---|
| 415 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 416 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 417 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 418 | <Hsp_hit-from>2458203</Hsp_hit-from> |
---|
| 419 | <Hsp_hit-to>2458232</Hsp_hit-to> |
---|
| 420 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 421 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 422 | <Hsp_identity>30</Hsp_identity> |
---|
| 423 | <Hsp_positive>30</Hsp_positive> |
---|
| 424 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 425 | <Hsp_qseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_qseq> |
---|
| 426 | <Hsp_hseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_hseq> |
---|
| 427 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 428 | </Hsp> |
---|
| 429 | </Hit_hsps> |
---|
| 430 | </Hit> |
---|
| 431 | </Iteration_hits> |
---|
| 432 | <Iteration_stat> |
---|
| 433 | <Statistics> |
---|
| 434 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 435 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 436 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 437 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 438 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 439 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 440 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 441 | </Statistics> |
---|
| 442 | </Iteration_stat> |
---|
| 443 | </Iteration> |
---|
| 444 | <Iteration> |
---|
| 445 | <Iteration_iter-num>10</Iteration_iter-num> |
---|
| 446 | <Iteration_query-ID>lcl|10_0</Iteration_query-ID> |
---|
| 447 | <Iteration_query-def>9_0.400000</Iteration_query-def> |
---|
| 448 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 449 | <Iteration_hits> |
---|
| 450 | <Hit> |
---|
| 451 | <Hit_num>1</Hit_num> |
---|
| 452 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 453 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 454 | <Hit_accession>0</Hit_accession> |
---|
| 455 | <Hit_len>5528445</Hit_len> |
---|
| 456 | <Hit_hsps> |
---|
| 457 | <Hsp> |
---|
| 458 | <Hsp_num>1</Hsp_num> |
---|
| 459 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 460 | <Hsp_score>30</Hsp_score> |
---|
| 461 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 462 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 463 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 464 | <Hsp_hit-from>5286666</Hsp_hit-from> |
---|
| 465 | <Hsp_hit-to>5286695</Hsp_hit-to> |
---|
| 466 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 467 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 468 | <Hsp_identity>30</Hsp_identity> |
---|
| 469 | <Hsp_positive>30</Hsp_positive> |
---|
| 470 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 471 | <Hsp_qseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_qseq> |
---|
| 472 | <Hsp_hseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_hseq> |
---|
| 473 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 474 | </Hsp> |
---|
| 475 | </Hit_hsps> |
---|
| 476 | </Hit> |
---|
| 477 | </Iteration_hits> |
---|
| 478 | <Iteration_stat> |
---|
| 479 | <Statistics> |
---|
| 480 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 481 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 482 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 483 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 484 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 485 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 486 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 487 | </Statistics> |
---|
| 488 | </Iteration_stat> |
---|
| 489 | </Iteration> |
---|
| 490 | <Iteration> |
---|
| 491 | <Iteration_iter-num>11</Iteration_iter-num> |
---|
| 492 | <Iteration_query-ID>lcl|11_0</Iteration_query-ID> |
---|
| 493 | <Iteration_query-def>10_0.500000</Iteration_query-def> |
---|
| 494 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 495 | <Iteration_hits> |
---|
| 496 | <Hit> |
---|
| 497 | <Hit_num>1</Hit_num> |
---|
| 498 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 499 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 500 | <Hit_accession>0</Hit_accession> |
---|
| 501 | <Hit_len>5528445</Hit_len> |
---|
| 502 | <Hit_hsps> |
---|
| 503 | <Hsp> |
---|
| 504 | <Hsp_num>1</Hsp_num> |
---|
| 505 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 506 | <Hsp_score>30</Hsp_score> |
---|
| 507 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 508 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 509 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 510 | <Hsp_hit-from>2787672</Hsp_hit-from> |
---|
| 511 | <Hsp_hit-to>2787701</Hsp_hit-to> |
---|
| 512 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 513 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 514 | <Hsp_identity>30</Hsp_identity> |
---|
| 515 | <Hsp_positive>30</Hsp_positive> |
---|
| 516 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 517 | <Hsp_qseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_qseq> |
---|
| 518 | <Hsp_hseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_hseq> |
---|
| 519 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 520 | </Hsp> |
---|
| 521 | </Hit_hsps> |
---|
| 522 | </Hit> |
---|
| 523 | </Iteration_hits> |
---|
| 524 | <Iteration_stat> |
---|
| 525 | <Statistics> |
---|
| 526 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 527 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 528 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 529 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 530 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 531 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 532 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 533 | </Statistics> |
---|
| 534 | </Iteration_stat> |
---|
| 535 | </Iteration> |
---|
| 536 | <Iteration> |
---|
| 537 | <Iteration_iter-num>13</Iteration_iter-num> |
---|
| 538 | <Iteration_query-ID>lcl|13_0</Iteration_query-ID> |
---|
| 539 | <Iteration_query-def>12_0.700000</Iteration_query-def> |
---|
| 540 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 541 | <Iteration_hits> |
---|
| 542 | <Hit> |
---|
| 543 | <Hit_num>1</Hit_num> |
---|
| 544 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 545 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 546 | <Hit_accession>0</Hit_accession> |
---|
| 547 | <Hit_len>5528445</Hit_len> |
---|
| 548 | <Hit_hsps> |
---|
| 549 | <Hsp> |
---|
| 550 | <Hsp_num>1</Hsp_num> |
---|
| 551 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 552 | <Hsp_score>30</Hsp_score> |
---|
| 553 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 554 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 555 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 556 | <Hsp_hit-from>4116145</Hsp_hit-from> |
---|
| 557 | <Hsp_hit-to>4116174</Hsp_hit-to> |
---|
| 558 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 559 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 560 | <Hsp_identity>30</Hsp_identity> |
---|
| 561 | <Hsp_positive>30</Hsp_positive> |
---|
| 562 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 563 | <Hsp_qseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_qseq> |
---|
| 564 | <Hsp_hseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_hseq> |
---|
| 565 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 566 | </Hsp> |
---|
| 567 | </Hit_hsps> |
---|
| 568 | </Hit> |
---|
| 569 | </Iteration_hits> |
---|
| 570 | <Iteration_stat> |
---|
| 571 | <Statistics> |
---|
| 572 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 573 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 574 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 575 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 576 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 577 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 578 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 579 | </Statistics> |
---|
| 580 | </Iteration_stat> |
---|
| 581 | </Iteration> |
---|
| 582 | <Iteration> |
---|
| 583 | <Iteration_iter-num>14</Iteration_iter-num> |
---|
| 584 | <Iteration_query-ID>lcl|14_0</Iteration_query-ID> |
---|
| 585 | <Iteration_query-def>13_0.533333</Iteration_query-def> |
---|
| 586 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 587 | <Iteration_hits> |
---|
| 588 | <Hit> |
---|
| 589 | <Hit_num>1</Hit_num> |
---|
| 590 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 591 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 592 | <Hit_accession>0</Hit_accession> |
---|
| 593 | <Hit_len>5528445</Hit_len> |
---|
| 594 | <Hit_hsps> |
---|
| 595 | <Hsp> |
---|
| 596 | <Hsp_num>1</Hsp_num> |
---|
| 597 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 598 | <Hsp_score>30</Hsp_score> |
---|
| 599 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 600 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 601 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 602 | <Hsp_hit-from>5442351</Hsp_hit-from> |
---|
| 603 | <Hsp_hit-to>5442380</Hsp_hit-to> |
---|
| 604 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 605 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 606 | <Hsp_identity>30</Hsp_identity> |
---|
| 607 | <Hsp_positive>30</Hsp_positive> |
---|
| 608 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 609 | <Hsp_qseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_qseq> |
---|
| 610 | <Hsp_hseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_hseq> |
---|
| 611 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 612 | </Hsp> |
---|
| 613 | </Hit_hsps> |
---|
| 614 | </Hit> |
---|
| 615 | </Iteration_hits> |
---|
| 616 | <Iteration_stat> |
---|
| 617 | <Statistics> |
---|
| 618 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 619 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 620 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 621 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 622 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 623 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 624 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 625 | </Statistics> |
---|
| 626 | </Iteration_stat> |
---|
| 627 | </Iteration> |
---|
| 628 | <Iteration> |
---|
| 629 | <Iteration_iter-num>15</Iteration_iter-num> |
---|
| 630 | <Iteration_query-ID>lcl|15_0</Iteration_query-ID> |
---|
| 631 | <Iteration_query-def>14_0.666667</Iteration_query-def> |
---|
| 632 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 633 | <Iteration_hits> |
---|
| 634 | <Hit> |
---|
| 635 | <Hit_num>1</Hit_num> |
---|
| 636 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 637 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 638 | <Hit_accession>0</Hit_accession> |
---|
| 639 | <Hit_len>5528445</Hit_len> |
---|
| 640 | <Hit_hsps> |
---|
| 641 | <Hsp> |
---|
| 642 | <Hsp_num>1</Hsp_num> |
---|
| 643 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 644 | <Hsp_score>30</Hsp_score> |
---|
| 645 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 646 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 647 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 648 | <Hsp_hit-from>4626492</Hsp_hit-from> |
---|
| 649 | <Hsp_hit-to>4626521</Hsp_hit-to> |
---|
| 650 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 651 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 652 | <Hsp_identity>30</Hsp_identity> |
---|
| 653 | <Hsp_positive>30</Hsp_positive> |
---|
| 654 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 655 | <Hsp_qseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_qseq> |
---|
| 656 | <Hsp_hseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_hseq> |
---|
| 657 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 658 | </Hsp> |
---|
| 659 | </Hit_hsps> |
---|
| 660 | </Hit> |
---|
| 661 | </Iteration_hits> |
---|
| 662 | <Iteration_stat> |
---|
| 663 | <Statistics> |
---|
| 664 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 665 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 666 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 667 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 668 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 669 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 670 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 671 | </Statistics> |
---|
| 672 | </Iteration_stat> |
---|
| 673 | </Iteration> |
---|
| 674 | <Iteration> |
---|
| 675 | <Iteration_iter-num>16</Iteration_iter-num> |
---|
| 676 | <Iteration_query-ID>lcl|16_0</Iteration_query-ID> |
---|
| 677 | <Iteration_query-def>15_0.666667</Iteration_query-def> |
---|
| 678 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 679 | <Iteration_hits> |
---|
| 680 | <Hit> |
---|
| 681 | <Hit_num>1</Hit_num> |
---|
| 682 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 683 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 684 | <Hit_accession>0</Hit_accession> |
---|
| 685 | <Hit_len>5528445</Hit_len> |
---|
| 686 | <Hit_hsps> |
---|
| 687 | <Hsp> |
---|
| 688 | <Hsp_num>1</Hsp_num> |
---|
| 689 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 690 | <Hsp_score>30</Hsp_score> |
---|
| 691 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 692 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 693 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 694 | <Hsp_hit-from>346897</Hsp_hit-from> |
---|
| 695 | <Hsp_hit-to>346926</Hsp_hit-to> |
---|
| 696 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 697 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 698 | <Hsp_identity>30</Hsp_identity> |
---|
| 699 | <Hsp_positive>30</Hsp_positive> |
---|
| 700 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 701 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 702 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 703 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 704 | </Hsp> |
---|
| 705 | <Hsp> |
---|
| 706 | <Hsp_num>2</Hsp_num> |
---|
| 707 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 708 | <Hsp_score>30</Hsp_score> |
---|
| 709 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 710 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 711 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 712 | <Hsp_hit-from>1466536</Hsp_hit-from> |
---|
| 713 | <Hsp_hit-to>1466565</Hsp_hit-to> |
---|
| 714 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 715 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 716 | <Hsp_identity>30</Hsp_identity> |
---|
| 717 | <Hsp_positive>30</Hsp_positive> |
---|
| 718 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 719 | <Hsp_qseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_qseq> |
---|
| 720 | <Hsp_hseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_hseq> |
---|
| 721 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 722 | </Hsp> |
---|
| 723 | <Hsp> |
---|
| 724 | <Hsp_num>3</Hsp_num> |
---|
| 725 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 726 | <Hsp_score>30</Hsp_score> |
---|
| 727 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 728 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 729 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 730 | <Hsp_hit-from>1750132</Hsp_hit-from> |
---|
| 731 | <Hsp_hit-to>1750161</Hsp_hit-to> |
---|
| 732 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 733 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 734 | <Hsp_identity>30</Hsp_identity> |
---|
| 735 | <Hsp_positive>30</Hsp_positive> |
---|
| 736 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 737 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 738 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 739 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 740 | </Hsp> |
---|
| 741 | <Hsp> |
---|
| 742 | <Hsp_num>4</Hsp_num> |
---|
| 743 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 744 | <Hsp_score>30</Hsp_score> |
---|
| 745 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 746 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 747 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 748 | <Hsp_hit-from>1908046</Hsp_hit-from> |
---|
| 749 | <Hsp_hit-to>1908075</Hsp_hit-to> |
---|
| 750 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 751 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 752 | <Hsp_identity>30</Hsp_identity> |
---|
| 753 | <Hsp_positive>30</Hsp_positive> |
---|
| 754 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 755 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 756 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 757 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 758 | </Hsp> |
---|
| 759 | <Hsp> |
---|
| 760 | <Hsp_num>5</Hsp_num> |
---|
| 761 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 762 | <Hsp_score>30</Hsp_score> |
---|
| 763 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 764 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 765 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 766 | <Hsp_hit-from>2279107</Hsp_hit-from> |
---|
| 767 | <Hsp_hit-to>2279136</Hsp_hit-to> |
---|
| 768 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 769 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 770 | <Hsp_identity>30</Hsp_identity> |
---|
| 771 | <Hsp_positive>30</Hsp_positive> |
---|
| 772 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 773 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 774 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 775 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 776 | </Hsp> |
---|
| 777 | <Hsp> |
---|
| 778 | <Hsp_num>6</Hsp_num> |
---|
| 779 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 780 | <Hsp_score>30</Hsp_score> |
---|
| 781 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 782 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 783 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 784 | <Hsp_hit-from>2813407</Hsp_hit-from> |
---|
| 785 | <Hsp_hit-to>2813436</Hsp_hit-to> |
---|
| 786 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 787 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 788 | <Hsp_identity>30</Hsp_identity> |
---|
| 789 | <Hsp_positive>30</Hsp_positive> |
---|
| 790 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 791 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 792 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 793 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 794 | </Hsp> |
---|
| 795 | <Hsp> |
---|
| 796 | <Hsp_num>7</Hsp_num> |
---|
| 797 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 798 | <Hsp_score>30</Hsp_score> |
---|
| 799 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 800 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 801 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 802 | <Hsp_hit-from>3939162</Hsp_hit-from> |
---|
| 803 | <Hsp_hit-to>3939191</Hsp_hit-to> |
---|
| 804 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 805 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 806 | <Hsp_identity>30</Hsp_identity> |
---|
| 807 | <Hsp_positive>30</Hsp_positive> |
---|
| 808 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 809 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 810 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 811 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 812 | </Hsp> |
---|
| 813 | <Hsp> |
---|
| 814 | <Hsp_num>8</Hsp_num> |
---|
| 815 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 816 | <Hsp_score>30</Hsp_score> |
---|
| 817 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 818 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 819 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 820 | <Hsp_hit-from>4656510</Hsp_hit-from> |
---|
| 821 | <Hsp_hit-to>4656539</Hsp_hit-to> |
---|
| 822 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 823 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 824 | <Hsp_identity>30</Hsp_identity> |
---|
| 825 | <Hsp_positive>30</Hsp_positive> |
---|
| 826 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 827 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
| 828 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
| 829 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 830 | </Hsp> |
---|
| 831 | </Hit_hsps> |
---|
| 832 | </Hit> |
---|
| 833 | </Iteration_hits> |
---|
| 834 | <Iteration_stat> |
---|
| 835 | <Statistics> |
---|
| 836 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 837 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 838 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 839 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 840 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 841 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 842 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 843 | </Statistics> |
---|
| 844 | </Iteration_stat> |
---|
| 845 | </Iteration> |
---|
| 846 | <Iteration> |
---|
| 847 | <Iteration_iter-num>17</Iteration_iter-num> |
---|
| 848 | <Iteration_query-ID>lcl|17_0</Iteration_query-ID> |
---|
| 849 | <Iteration_query-def>16_0.566667</Iteration_query-def> |
---|
| 850 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 851 | <Iteration_hits> |
---|
| 852 | <Hit> |
---|
| 853 | <Hit_num>1</Hit_num> |
---|
| 854 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 855 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 856 | <Hit_accession>0</Hit_accession> |
---|
| 857 | <Hit_len>5528445</Hit_len> |
---|
| 858 | <Hit_hsps> |
---|
| 859 | <Hsp> |
---|
| 860 | <Hsp_num>1</Hsp_num> |
---|
| 861 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 862 | <Hsp_score>30</Hsp_score> |
---|
| 863 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 864 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 865 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 866 | <Hsp_hit-from>2595157</Hsp_hit-from> |
---|
| 867 | <Hsp_hit-to>2595186</Hsp_hit-to> |
---|
| 868 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 869 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 870 | <Hsp_identity>30</Hsp_identity> |
---|
| 871 | <Hsp_positive>30</Hsp_positive> |
---|
| 872 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 873 | <Hsp_qseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_qseq> |
---|
| 874 | <Hsp_hseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_hseq> |
---|
| 875 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 876 | </Hsp> |
---|
| 877 | </Hit_hsps> |
---|
| 878 | </Hit> |
---|
| 879 | </Iteration_hits> |
---|
| 880 | <Iteration_stat> |
---|
| 881 | <Statistics> |
---|
| 882 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 883 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 884 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 885 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 886 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 887 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 888 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 889 | </Statistics> |
---|
| 890 | </Iteration_stat> |
---|
| 891 | </Iteration> |
---|
| 892 | <Iteration> |
---|
| 893 | <Iteration_iter-num>18</Iteration_iter-num> |
---|
| 894 | <Iteration_query-ID>lcl|18_0</Iteration_query-ID> |
---|
| 895 | <Iteration_query-def>17_0.533333</Iteration_query-def> |
---|
| 896 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 897 | <Iteration_hits> |
---|
| 898 | <Hit> |
---|
| 899 | <Hit_num>1</Hit_num> |
---|
| 900 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 901 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 902 | <Hit_accession>0</Hit_accession> |
---|
| 903 | <Hit_len>5528445</Hit_len> |
---|
| 904 | <Hit_hsps> |
---|
| 905 | <Hsp> |
---|
| 906 | <Hsp_num>1</Hsp_num> |
---|
| 907 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 908 | <Hsp_score>30</Hsp_score> |
---|
| 909 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 910 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 911 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 912 | <Hsp_hit-from>717743</Hsp_hit-from> |
---|
| 913 | <Hsp_hit-to>717772</Hsp_hit-to> |
---|
| 914 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 915 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 916 | <Hsp_identity>30</Hsp_identity> |
---|
| 917 | <Hsp_positive>30</Hsp_positive> |
---|
| 918 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 919 | <Hsp_qseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_qseq> |
---|
| 920 | <Hsp_hseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_hseq> |
---|
| 921 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 922 | </Hsp> |
---|
| 923 | </Hit_hsps> |
---|
| 924 | </Hit> |
---|
| 925 | </Iteration_hits> |
---|
| 926 | <Iteration_stat> |
---|
| 927 | <Statistics> |
---|
| 928 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 929 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 930 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 931 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 932 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 933 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 934 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 935 | </Statistics> |
---|
| 936 | </Iteration_stat> |
---|
| 937 | </Iteration> |
---|
| 938 | <Iteration> |
---|
| 939 | <Iteration_iter-num>20</Iteration_iter-num> |
---|
| 940 | <Iteration_query-ID>lcl|20_0</Iteration_query-ID> |
---|
| 941 | <Iteration_query-def>19_0.566667</Iteration_query-def> |
---|
| 942 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 943 | <Iteration_hits> |
---|
| 944 | <Hit> |
---|
| 945 | <Hit_num>1</Hit_num> |
---|
| 946 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 947 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 948 | <Hit_accession>0</Hit_accession> |
---|
| 949 | <Hit_len>5528445</Hit_len> |
---|
| 950 | <Hit_hsps> |
---|
| 951 | <Hsp> |
---|
| 952 | <Hsp_num>1</Hsp_num> |
---|
| 953 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 954 | <Hsp_score>30</Hsp_score> |
---|
| 955 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 956 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 957 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 958 | <Hsp_hit-from>1237938</Hsp_hit-from> |
---|
| 959 | <Hsp_hit-to>1237967</Hsp_hit-to> |
---|
| 960 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 961 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 962 | <Hsp_identity>30</Hsp_identity> |
---|
| 963 | <Hsp_positive>30</Hsp_positive> |
---|
| 964 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 965 | <Hsp_qseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_qseq> |
---|
| 966 | <Hsp_hseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_hseq> |
---|
| 967 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 968 | </Hsp> |
---|
| 969 | </Hit_hsps> |
---|
| 970 | </Hit> |
---|
| 971 | </Iteration_hits> |
---|
| 972 | <Iteration_stat> |
---|
| 973 | <Statistics> |
---|
| 974 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 975 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 976 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 977 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 978 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 979 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 980 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 981 | </Statistics> |
---|
| 982 | </Iteration_stat> |
---|
| 983 | </Iteration> |
---|
| 984 | <Iteration> |
---|
| 985 | <Iteration_iter-num>21</Iteration_iter-num> |
---|
| 986 | <Iteration_query-ID>lcl|21_0</Iteration_query-ID> |
---|
| 987 | <Iteration_query-def>20_0.566667</Iteration_query-def> |
---|
| 988 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 989 | <Iteration_hits> |
---|
| 990 | <Hit> |
---|
| 991 | <Hit_num>1</Hit_num> |
---|
| 992 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 993 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 994 | <Hit_accession>0</Hit_accession> |
---|
| 995 | <Hit_len>5528445</Hit_len> |
---|
| 996 | <Hit_hsps> |
---|
| 997 | <Hsp> |
---|
| 998 | <Hsp_num>1</Hsp_num> |
---|
| 999 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1000 | <Hsp_score>30</Hsp_score> |
---|
| 1001 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1002 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1003 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1004 | <Hsp_hit-from>4792054</Hsp_hit-from> |
---|
| 1005 | <Hsp_hit-to>4792083</Hsp_hit-to> |
---|
| 1006 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1007 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1008 | <Hsp_identity>30</Hsp_identity> |
---|
| 1009 | <Hsp_positive>30</Hsp_positive> |
---|
| 1010 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1011 | <Hsp_qseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_qseq> |
---|
| 1012 | <Hsp_hseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_hseq> |
---|
| 1013 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1014 | </Hsp> |
---|
| 1015 | </Hit_hsps> |
---|
| 1016 | </Hit> |
---|
| 1017 | </Iteration_hits> |
---|
| 1018 | <Iteration_stat> |
---|
| 1019 | <Statistics> |
---|
| 1020 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1021 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1022 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1023 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1024 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1025 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1026 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1027 | </Statistics> |
---|
| 1028 | </Iteration_stat> |
---|
| 1029 | </Iteration> |
---|
| 1030 | <Iteration> |
---|
| 1031 | <Iteration_iter-num>22</Iteration_iter-num> |
---|
| 1032 | <Iteration_query-ID>lcl|22_0</Iteration_query-ID> |
---|
| 1033 | <Iteration_query-def>21_0.733333</Iteration_query-def> |
---|
| 1034 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1035 | <Iteration_hits> |
---|
| 1036 | <Hit> |
---|
| 1037 | <Hit_num>1</Hit_num> |
---|
| 1038 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1039 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1040 | <Hit_accession>0</Hit_accession> |
---|
| 1041 | <Hit_len>5528445</Hit_len> |
---|
| 1042 | <Hit_hsps> |
---|
| 1043 | <Hsp> |
---|
| 1044 | <Hsp_num>1</Hsp_num> |
---|
| 1045 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1046 | <Hsp_score>30</Hsp_score> |
---|
| 1047 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1048 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1049 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1050 | <Hsp_hit-from>269757</Hsp_hit-from> |
---|
| 1051 | <Hsp_hit-to>269786</Hsp_hit-to> |
---|
| 1052 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1053 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1054 | <Hsp_identity>30</Hsp_identity> |
---|
| 1055 | <Hsp_positive>30</Hsp_positive> |
---|
| 1056 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1057 | <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> |
---|
| 1058 | <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> |
---|
| 1059 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1060 | </Hsp> |
---|
| 1061 | <Hsp> |
---|
| 1062 | <Hsp_num>2</Hsp_num> |
---|
| 1063 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1064 | <Hsp_score>30</Hsp_score> |
---|
| 1065 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1066 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1067 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1068 | <Hsp_hit-from>274007</Hsp_hit-from> |
---|
| 1069 | <Hsp_hit-to>274036</Hsp_hit-to> |
---|
| 1070 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1071 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1072 | <Hsp_identity>30</Hsp_identity> |
---|
| 1073 | <Hsp_positive>30</Hsp_positive> |
---|
| 1074 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1075 | <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> |
---|
| 1076 | <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> |
---|
| 1077 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1078 | </Hsp> |
---|
| 1079 | </Hit_hsps> |
---|
| 1080 | </Hit> |
---|
| 1081 | </Iteration_hits> |
---|
| 1082 | <Iteration_stat> |
---|
| 1083 | <Statistics> |
---|
| 1084 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1085 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1086 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1087 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1088 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1089 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1090 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1091 | </Statistics> |
---|
| 1092 | </Iteration_stat> |
---|
| 1093 | </Iteration> |
---|
| 1094 | <Iteration> |
---|
| 1095 | <Iteration_iter-num>23</Iteration_iter-num> |
---|
| 1096 | <Iteration_query-ID>lcl|23_0</Iteration_query-ID> |
---|
| 1097 | <Iteration_query-def>22_0.566667</Iteration_query-def> |
---|
| 1098 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1099 | <Iteration_hits> |
---|
| 1100 | <Hit> |
---|
| 1101 | <Hit_num>1</Hit_num> |
---|
| 1102 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1103 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1104 | <Hit_accession>0</Hit_accession> |
---|
| 1105 | <Hit_len>5528445</Hit_len> |
---|
| 1106 | <Hit_hsps> |
---|
| 1107 | <Hsp> |
---|
| 1108 | <Hsp_num>1</Hsp_num> |
---|
| 1109 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1110 | <Hsp_score>30</Hsp_score> |
---|
| 1111 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1112 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1113 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1114 | <Hsp_hit-from>2706426</Hsp_hit-from> |
---|
| 1115 | <Hsp_hit-to>2706455</Hsp_hit-to> |
---|
| 1116 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1117 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1118 | <Hsp_identity>30</Hsp_identity> |
---|
| 1119 | <Hsp_positive>30</Hsp_positive> |
---|
| 1120 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1121 | <Hsp_qseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_qseq> |
---|
| 1122 | <Hsp_hseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_hseq> |
---|
| 1123 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1124 | </Hsp> |
---|
| 1125 | </Hit_hsps> |
---|
| 1126 | </Hit> |
---|
| 1127 | </Iteration_hits> |
---|
| 1128 | <Iteration_stat> |
---|
| 1129 | <Statistics> |
---|
| 1130 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1131 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1132 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1133 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1134 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1135 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1136 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1137 | </Statistics> |
---|
| 1138 | </Iteration_stat> |
---|
| 1139 | </Iteration> |
---|
| 1140 | <Iteration> |
---|
| 1141 | <Iteration_iter-num>24</Iteration_iter-num> |
---|
| 1142 | <Iteration_query-ID>lcl|24_0</Iteration_query-ID> |
---|
| 1143 | <Iteration_query-def>23_0.600000</Iteration_query-def> |
---|
| 1144 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1145 | <Iteration_hits> |
---|
| 1146 | <Hit> |
---|
| 1147 | <Hit_num>1</Hit_num> |
---|
| 1148 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1149 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1150 | <Hit_accession>0</Hit_accession> |
---|
| 1151 | <Hit_len>5528445</Hit_len> |
---|
| 1152 | <Hit_hsps> |
---|
| 1153 | <Hsp> |
---|
| 1154 | <Hsp_num>1</Hsp_num> |
---|
| 1155 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1156 | <Hsp_score>30</Hsp_score> |
---|
| 1157 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1158 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1159 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1160 | <Hsp_hit-from>1512107</Hsp_hit-from> |
---|
| 1161 | <Hsp_hit-to>1512136</Hsp_hit-to> |
---|
| 1162 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1163 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1164 | <Hsp_identity>30</Hsp_identity> |
---|
| 1165 | <Hsp_positive>30</Hsp_positive> |
---|
| 1166 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1167 | <Hsp_qseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_qseq> |
---|
| 1168 | <Hsp_hseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_hseq> |
---|
| 1169 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1170 | </Hsp> |
---|
| 1171 | </Hit_hsps> |
---|
| 1172 | </Hit> |
---|
| 1173 | </Iteration_hits> |
---|
| 1174 | <Iteration_stat> |
---|
| 1175 | <Statistics> |
---|
| 1176 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1177 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1178 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1179 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1180 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1181 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1182 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1183 | </Statistics> |
---|
| 1184 | </Iteration_stat> |
---|
| 1185 | </Iteration> |
---|
| 1186 | <Iteration> |
---|
| 1187 | <Iteration_iter-num>25</Iteration_iter-num> |
---|
| 1188 | <Iteration_query-ID>lcl|25_0</Iteration_query-ID> |
---|
| 1189 | <Iteration_query-def>24_0.733333</Iteration_query-def> |
---|
| 1190 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1191 | <Iteration_hits> |
---|
| 1192 | <Hit> |
---|
| 1193 | <Hit_num>1</Hit_num> |
---|
| 1194 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1195 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1196 | <Hit_accession>0</Hit_accession> |
---|
| 1197 | <Hit_len>5528445</Hit_len> |
---|
| 1198 | <Hit_hsps> |
---|
| 1199 | <Hsp> |
---|
| 1200 | <Hsp_num>1</Hsp_num> |
---|
| 1201 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1202 | <Hsp_score>30</Hsp_score> |
---|
| 1203 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1204 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1205 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1206 | <Hsp_hit-from>2032108</Hsp_hit-from> |
---|
| 1207 | <Hsp_hit-to>2032137</Hsp_hit-to> |
---|
| 1208 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1209 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1210 | <Hsp_identity>30</Hsp_identity> |
---|
| 1211 | <Hsp_positive>30</Hsp_positive> |
---|
| 1212 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1213 | <Hsp_qseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_qseq> |
---|
| 1214 | <Hsp_hseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_hseq> |
---|
| 1215 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1216 | </Hsp> |
---|
| 1217 | </Hit_hsps> |
---|
| 1218 | </Hit> |
---|
| 1219 | </Iteration_hits> |
---|
| 1220 | <Iteration_stat> |
---|
| 1221 | <Statistics> |
---|
| 1222 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1223 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1224 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1225 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1226 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1227 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1228 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1229 | </Statistics> |
---|
| 1230 | </Iteration_stat> |
---|
| 1231 | </Iteration> |
---|
| 1232 | <Iteration> |
---|
| 1233 | <Iteration_iter-num>26</Iteration_iter-num> |
---|
| 1234 | <Iteration_query-ID>lcl|26_0</Iteration_query-ID> |
---|
| 1235 | <Iteration_query-def>25_0.266667</Iteration_query-def> |
---|
| 1236 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1237 | <Iteration_hits> |
---|
| 1238 | <Hit> |
---|
| 1239 | <Hit_num>1</Hit_num> |
---|
| 1240 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1241 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1242 | <Hit_accession>0</Hit_accession> |
---|
| 1243 | <Hit_len>5528445</Hit_len> |
---|
| 1244 | <Hit_hsps> |
---|
| 1245 | <Hsp> |
---|
| 1246 | <Hsp_num>1</Hsp_num> |
---|
| 1247 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1248 | <Hsp_score>30</Hsp_score> |
---|
| 1249 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1250 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1251 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1252 | <Hsp_hit-from>1343811</Hsp_hit-from> |
---|
| 1253 | <Hsp_hit-to>1343840</Hsp_hit-to> |
---|
| 1254 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1255 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1256 | <Hsp_identity>30</Hsp_identity> |
---|
| 1257 | <Hsp_positive>30</Hsp_positive> |
---|
| 1258 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1259 | <Hsp_qseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_qseq> |
---|
| 1260 | <Hsp_hseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_hseq> |
---|
| 1261 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1262 | </Hsp> |
---|
| 1263 | </Hit_hsps> |
---|
| 1264 | </Hit> |
---|
| 1265 | </Iteration_hits> |
---|
| 1266 | <Iteration_stat> |
---|
| 1267 | <Statistics> |
---|
| 1268 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1269 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1270 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1271 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1272 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1273 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1274 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1275 | </Statistics> |
---|
| 1276 | </Iteration_stat> |
---|
| 1277 | </Iteration> |
---|
| 1278 | <Iteration> |
---|
| 1279 | <Iteration_iter-num>27</Iteration_iter-num> |
---|
| 1280 | <Iteration_query-ID>lcl|27_0</Iteration_query-ID> |
---|
| 1281 | <Iteration_query-def>26_0.566667</Iteration_query-def> |
---|
| 1282 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1283 | <Iteration_hits> |
---|
| 1284 | <Hit> |
---|
| 1285 | <Hit_num>1</Hit_num> |
---|
| 1286 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1287 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1288 | <Hit_accession>0</Hit_accession> |
---|
| 1289 | <Hit_len>5528445</Hit_len> |
---|
| 1290 | <Hit_hsps> |
---|
| 1291 | <Hsp> |
---|
| 1292 | <Hsp_num>1</Hsp_num> |
---|
| 1293 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1294 | <Hsp_score>30</Hsp_score> |
---|
| 1295 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1296 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1297 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1298 | <Hsp_hit-from>3112551</Hsp_hit-from> |
---|
| 1299 | <Hsp_hit-to>3112580</Hsp_hit-to> |
---|
| 1300 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1301 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1302 | <Hsp_identity>30</Hsp_identity> |
---|
| 1303 | <Hsp_positive>30</Hsp_positive> |
---|
| 1304 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1305 | <Hsp_qseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_qseq> |
---|
| 1306 | <Hsp_hseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_hseq> |
---|
| 1307 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1308 | </Hsp> |
---|
| 1309 | </Hit_hsps> |
---|
| 1310 | </Hit> |
---|
| 1311 | </Iteration_hits> |
---|
| 1312 | <Iteration_stat> |
---|
| 1313 | <Statistics> |
---|
| 1314 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1315 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1316 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1317 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1318 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1319 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1320 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1321 | </Statistics> |
---|
| 1322 | </Iteration_stat> |
---|
| 1323 | </Iteration> |
---|
| 1324 | <Iteration> |
---|
| 1325 | <Iteration_iter-num>29</Iteration_iter-num> |
---|
| 1326 | <Iteration_query-ID>lcl|29_0</Iteration_query-ID> |
---|
| 1327 | <Iteration_query-def>28_0.666667</Iteration_query-def> |
---|
| 1328 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1329 | <Iteration_hits> |
---|
| 1330 | <Hit> |
---|
| 1331 | <Hit_num>1</Hit_num> |
---|
| 1332 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1333 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1334 | <Hit_accession>0</Hit_accession> |
---|
| 1335 | <Hit_len>5528445</Hit_len> |
---|
| 1336 | <Hit_hsps> |
---|
| 1337 | <Hsp> |
---|
| 1338 | <Hsp_num>1</Hsp_num> |
---|
| 1339 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1340 | <Hsp_score>30</Hsp_score> |
---|
| 1341 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1342 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1343 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1344 | <Hsp_hit-from>4405442</Hsp_hit-from> |
---|
| 1345 | <Hsp_hit-to>4405471</Hsp_hit-to> |
---|
| 1346 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1347 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1348 | <Hsp_identity>30</Hsp_identity> |
---|
| 1349 | <Hsp_positive>30</Hsp_positive> |
---|
| 1350 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1351 | <Hsp_qseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_qseq> |
---|
| 1352 | <Hsp_hseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_hseq> |
---|
| 1353 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1354 | </Hsp> |
---|
| 1355 | </Hit_hsps> |
---|
| 1356 | </Hit> |
---|
| 1357 | </Iteration_hits> |
---|
| 1358 | <Iteration_stat> |
---|
| 1359 | <Statistics> |
---|
| 1360 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1361 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1362 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1363 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1364 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1365 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1366 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1367 | </Statistics> |
---|
| 1368 | </Iteration_stat> |
---|
| 1369 | </Iteration> |
---|
| 1370 | <Iteration> |
---|
| 1371 | <Iteration_iter-num>30</Iteration_iter-num> |
---|
| 1372 | <Iteration_query-ID>lcl|30_0</Iteration_query-ID> |
---|
| 1373 | <Iteration_query-def>29_0.700000</Iteration_query-def> |
---|
| 1374 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1375 | <Iteration_hits> |
---|
| 1376 | <Hit> |
---|
| 1377 | <Hit_num>1</Hit_num> |
---|
| 1378 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1379 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1380 | <Hit_accession>0</Hit_accession> |
---|
| 1381 | <Hit_len>5528445</Hit_len> |
---|
| 1382 | <Hit_hsps> |
---|
| 1383 | <Hsp> |
---|
| 1384 | <Hsp_num>1</Hsp_num> |
---|
| 1385 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1386 | <Hsp_score>30</Hsp_score> |
---|
| 1387 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1388 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1389 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1390 | <Hsp_hit-from>3600547</Hsp_hit-from> |
---|
| 1391 | <Hsp_hit-to>3600576</Hsp_hit-to> |
---|
| 1392 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1393 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1394 | <Hsp_identity>30</Hsp_identity> |
---|
| 1395 | <Hsp_positive>30</Hsp_positive> |
---|
| 1396 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1397 | <Hsp_qseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_qseq> |
---|
| 1398 | <Hsp_hseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_hseq> |
---|
| 1399 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1400 | </Hsp> |
---|
| 1401 | </Hit_hsps> |
---|
| 1402 | </Hit> |
---|
| 1403 | </Iteration_hits> |
---|
| 1404 | <Iteration_stat> |
---|
| 1405 | <Statistics> |
---|
| 1406 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1407 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1408 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1409 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1410 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1411 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1412 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1413 | </Statistics> |
---|
| 1414 | </Iteration_stat> |
---|
| 1415 | </Iteration> |
---|
| 1416 | <Iteration> |
---|
| 1417 | <Iteration_iter-num>33</Iteration_iter-num> |
---|
| 1418 | <Iteration_query-ID>lcl|33_0</Iteration_query-ID> |
---|
| 1419 | <Iteration_query-def>32_0.600000</Iteration_query-def> |
---|
| 1420 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1421 | <Iteration_hits> |
---|
| 1422 | <Hit> |
---|
| 1423 | <Hit_num>1</Hit_num> |
---|
| 1424 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1425 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1426 | <Hit_accession>0</Hit_accession> |
---|
| 1427 | <Hit_len>5528445</Hit_len> |
---|
| 1428 | <Hit_hsps> |
---|
| 1429 | <Hsp> |
---|
| 1430 | <Hsp_num>1</Hsp_num> |
---|
| 1431 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1432 | <Hsp_score>30</Hsp_score> |
---|
| 1433 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1434 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1435 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1436 | <Hsp_hit-from>1435670</Hsp_hit-from> |
---|
| 1437 | <Hsp_hit-to>1435699</Hsp_hit-to> |
---|
| 1438 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1439 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1440 | <Hsp_identity>30</Hsp_identity> |
---|
| 1441 | <Hsp_positive>30</Hsp_positive> |
---|
| 1442 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1443 | <Hsp_qseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_qseq> |
---|
| 1444 | <Hsp_hseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_hseq> |
---|
| 1445 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1446 | </Hsp> |
---|
| 1447 | </Hit_hsps> |
---|
| 1448 | </Hit> |
---|
| 1449 | </Iteration_hits> |
---|
| 1450 | <Iteration_stat> |
---|
| 1451 | <Statistics> |
---|
| 1452 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1453 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1454 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1455 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1456 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1457 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1458 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1459 | </Statistics> |
---|
| 1460 | </Iteration_stat> |
---|
| 1461 | </Iteration> |
---|
| 1462 | <Iteration> |
---|
| 1463 | <Iteration_iter-num>34</Iteration_iter-num> |
---|
| 1464 | <Iteration_query-ID>lcl|34_0</Iteration_query-ID> |
---|
| 1465 | <Iteration_query-def>33_0.300000</Iteration_query-def> |
---|
| 1466 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1467 | <Iteration_hits> |
---|
| 1468 | <Hit> |
---|
| 1469 | <Hit_num>1</Hit_num> |
---|
| 1470 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1471 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1472 | <Hit_accession>0</Hit_accession> |
---|
| 1473 | <Hit_len>5528445</Hit_len> |
---|
| 1474 | <Hit_hsps> |
---|
| 1475 | <Hsp> |
---|
| 1476 | <Hsp_num>1</Hsp_num> |
---|
| 1477 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1478 | <Hsp_score>30</Hsp_score> |
---|
| 1479 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1480 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1481 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1482 | <Hsp_hit-from>3788178</Hsp_hit-from> |
---|
| 1483 | <Hsp_hit-to>3788207</Hsp_hit-to> |
---|
| 1484 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1485 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1486 | <Hsp_identity>30</Hsp_identity> |
---|
| 1487 | <Hsp_positive>30</Hsp_positive> |
---|
| 1488 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1489 | <Hsp_qseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_qseq> |
---|
| 1490 | <Hsp_hseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_hseq> |
---|
| 1491 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1492 | </Hsp> |
---|
| 1493 | </Hit_hsps> |
---|
| 1494 | </Hit> |
---|
| 1495 | </Iteration_hits> |
---|
| 1496 | <Iteration_stat> |
---|
| 1497 | <Statistics> |
---|
| 1498 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1499 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1500 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1501 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1502 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1503 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1504 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1505 | </Statistics> |
---|
| 1506 | </Iteration_stat> |
---|
| 1507 | </Iteration> |
---|
| 1508 | <Iteration> |
---|
| 1509 | <Iteration_iter-num>35</Iteration_iter-num> |
---|
| 1510 | <Iteration_query-ID>lcl|35_0</Iteration_query-ID> |
---|
| 1511 | <Iteration_query-def>34_0.533333</Iteration_query-def> |
---|
| 1512 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1513 | <Iteration_hits> |
---|
| 1514 | <Hit> |
---|
| 1515 | <Hit_num>1</Hit_num> |
---|
| 1516 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1517 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1518 | <Hit_accession>0</Hit_accession> |
---|
| 1519 | <Hit_len>5528445</Hit_len> |
---|
| 1520 | <Hit_hsps> |
---|
| 1521 | <Hsp> |
---|
| 1522 | <Hsp_num>1</Hsp_num> |
---|
| 1523 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1524 | <Hsp_score>30</Hsp_score> |
---|
| 1525 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1526 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1527 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1528 | <Hsp_hit-from>484499</Hsp_hit-from> |
---|
| 1529 | <Hsp_hit-to>484528</Hsp_hit-to> |
---|
| 1530 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1531 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1532 | <Hsp_identity>30</Hsp_identity> |
---|
| 1533 | <Hsp_positive>30</Hsp_positive> |
---|
| 1534 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1535 | <Hsp_qseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_qseq> |
---|
| 1536 | <Hsp_hseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_hseq> |
---|
| 1537 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1538 | </Hsp> |
---|
| 1539 | </Hit_hsps> |
---|
| 1540 | </Hit> |
---|
| 1541 | </Iteration_hits> |
---|
| 1542 | <Iteration_stat> |
---|
| 1543 | <Statistics> |
---|
| 1544 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1545 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1546 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1547 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1548 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1549 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1550 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1551 | </Statistics> |
---|
| 1552 | </Iteration_stat> |
---|
| 1553 | </Iteration> |
---|
| 1554 | <Iteration> |
---|
| 1555 | <Iteration_iter-num>36</Iteration_iter-num> |
---|
| 1556 | <Iteration_query-ID>lcl|36_0</Iteration_query-ID> |
---|
| 1557 | <Iteration_query-def>35_0.466667</Iteration_query-def> |
---|
| 1558 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1559 | <Iteration_hits> |
---|
| 1560 | <Hit> |
---|
| 1561 | <Hit_num>1</Hit_num> |
---|
| 1562 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1563 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1564 | <Hit_accession>0</Hit_accession> |
---|
| 1565 | <Hit_len>5528445</Hit_len> |
---|
| 1566 | <Hit_hsps> |
---|
| 1567 | <Hsp> |
---|
| 1568 | <Hsp_num>1</Hsp_num> |
---|
| 1569 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1570 | <Hsp_score>30</Hsp_score> |
---|
| 1571 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1572 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1573 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1574 | <Hsp_hit-from>2250064</Hsp_hit-from> |
---|
| 1575 | <Hsp_hit-to>2250093</Hsp_hit-to> |
---|
| 1576 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1577 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1578 | <Hsp_identity>30</Hsp_identity> |
---|
| 1579 | <Hsp_positive>30</Hsp_positive> |
---|
| 1580 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1581 | <Hsp_qseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_qseq> |
---|
| 1582 | <Hsp_hseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_hseq> |
---|
| 1583 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1584 | </Hsp> |
---|
| 1585 | </Hit_hsps> |
---|
| 1586 | </Hit> |
---|
| 1587 | </Iteration_hits> |
---|
| 1588 | <Iteration_stat> |
---|
| 1589 | <Statistics> |
---|
| 1590 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1591 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1592 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1593 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1594 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1595 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1596 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1597 | </Statistics> |
---|
| 1598 | </Iteration_stat> |
---|
| 1599 | </Iteration> |
---|
| 1600 | <Iteration> |
---|
| 1601 | <Iteration_iter-num>37</Iteration_iter-num> |
---|
| 1602 | <Iteration_query-ID>lcl|37_0</Iteration_query-ID> |
---|
| 1603 | <Iteration_query-def>36_0.433333</Iteration_query-def> |
---|
| 1604 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1605 | <Iteration_hits> |
---|
| 1606 | <Hit> |
---|
| 1607 | <Hit_num>1</Hit_num> |
---|
| 1608 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1609 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1610 | <Hit_accession>0</Hit_accession> |
---|
| 1611 | <Hit_len>5528445</Hit_len> |
---|
| 1612 | <Hit_hsps> |
---|
| 1613 | <Hsp> |
---|
| 1614 | <Hsp_num>1</Hsp_num> |
---|
| 1615 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1616 | <Hsp_score>30</Hsp_score> |
---|
| 1617 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1618 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1619 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1620 | <Hsp_hit-from>3698178</Hsp_hit-from> |
---|
| 1621 | <Hsp_hit-to>3698207</Hsp_hit-to> |
---|
| 1622 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1623 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1624 | <Hsp_identity>30</Hsp_identity> |
---|
| 1625 | <Hsp_positive>30</Hsp_positive> |
---|
| 1626 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1627 | <Hsp_qseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_qseq> |
---|
| 1628 | <Hsp_hseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_hseq> |
---|
| 1629 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1630 | </Hsp> |
---|
| 1631 | </Hit_hsps> |
---|
| 1632 | </Hit> |
---|
| 1633 | </Iteration_hits> |
---|
| 1634 | <Iteration_stat> |
---|
| 1635 | <Statistics> |
---|
| 1636 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1637 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1638 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1639 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1640 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1641 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1642 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1643 | </Statistics> |
---|
| 1644 | </Iteration_stat> |
---|
| 1645 | </Iteration> |
---|
| 1646 | <Iteration> |
---|
| 1647 | <Iteration_iter-num>39</Iteration_iter-num> |
---|
| 1648 | <Iteration_query-ID>lcl|39_0</Iteration_query-ID> |
---|
| 1649 | <Iteration_query-def>38_0.533333</Iteration_query-def> |
---|
| 1650 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1651 | <Iteration_hits> |
---|
| 1652 | <Hit> |
---|
| 1653 | <Hit_num>1</Hit_num> |
---|
| 1654 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1655 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1656 | <Hit_accession>0</Hit_accession> |
---|
| 1657 | <Hit_len>5528445</Hit_len> |
---|
| 1658 | <Hit_hsps> |
---|
| 1659 | <Hsp> |
---|
| 1660 | <Hsp_num>1</Hsp_num> |
---|
| 1661 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1662 | <Hsp_score>30</Hsp_score> |
---|
| 1663 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1664 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1665 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1666 | <Hsp_hit-from>4242501</Hsp_hit-from> |
---|
| 1667 | <Hsp_hit-to>4242530</Hsp_hit-to> |
---|
| 1668 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1669 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1670 | <Hsp_identity>30</Hsp_identity> |
---|
| 1671 | <Hsp_positive>30</Hsp_positive> |
---|
| 1672 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1673 | <Hsp_qseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_qseq> |
---|
| 1674 | <Hsp_hseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_hseq> |
---|
| 1675 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1676 | </Hsp> |
---|
| 1677 | </Hit_hsps> |
---|
| 1678 | </Hit> |
---|
| 1679 | </Iteration_hits> |
---|
| 1680 | <Iteration_stat> |
---|
| 1681 | <Statistics> |
---|
| 1682 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1683 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1684 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1685 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1686 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1687 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1688 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1689 | </Statistics> |
---|
| 1690 | </Iteration_stat> |
---|
| 1691 | </Iteration> |
---|
| 1692 | <Iteration> |
---|
| 1693 | <Iteration_iter-num>40</Iteration_iter-num> |
---|
| 1694 | <Iteration_query-ID>lcl|40_0</Iteration_query-ID> |
---|
| 1695 | <Iteration_query-def>39_0.400000</Iteration_query-def> |
---|
| 1696 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1697 | <Iteration_hits> |
---|
| 1698 | <Hit> |
---|
| 1699 | <Hit_num>1</Hit_num> |
---|
| 1700 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1701 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1702 | <Hit_accession>0</Hit_accession> |
---|
| 1703 | <Hit_len>5528445</Hit_len> |
---|
| 1704 | <Hit_hsps> |
---|
| 1705 | <Hsp> |
---|
| 1706 | <Hsp_num>1</Hsp_num> |
---|
| 1707 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1708 | <Hsp_score>30</Hsp_score> |
---|
| 1709 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1710 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1711 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1712 | <Hsp_hit-from>3683151</Hsp_hit-from> |
---|
| 1713 | <Hsp_hit-to>3683180</Hsp_hit-to> |
---|
| 1714 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1715 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1716 | <Hsp_identity>30</Hsp_identity> |
---|
| 1717 | <Hsp_positive>30</Hsp_positive> |
---|
| 1718 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1719 | <Hsp_qseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_qseq> |
---|
| 1720 | <Hsp_hseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_hseq> |
---|
| 1721 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1722 | </Hsp> |
---|
| 1723 | </Hit_hsps> |
---|
| 1724 | </Hit> |
---|
| 1725 | </Iteration_hits> |
---|
| 1726 | <Iteration_stat> |
---|
| 1727 | <Statistics> |
---|
| 1728 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1729 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1730 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1731 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1732 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1733 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1734 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1735 | </Statistics> |
---|
| 1736 | </Iteration_stat> |
---|
| 1737 | </Iteration> |
---|
| 1738 | <Iteration> |
---|
| 1739 | <Iteration_iter-num>42</Iteration_iter-num> |
---|
| 1740 | <Iteration_query-ID>lcl|42_0</Iteration_query-ID> |
---|
| 1741 | <Iteration_query-def>41_0.566667</Iteration_query-def> |
---|
| 1742 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1743 | <Iteration_hits> |
---|
| 1744 | <Hit> |
---|
| 1745 | <Hit_num>1</Hit_num> |
---|
| 1746 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1747 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1748 | <Hit_accession>0</Hit_accession> |
---|
| 1749 | <Hit_len>5528445</Hit_len> |
---|
| 1750 | <Hit_hsps> |
---|
| 1751 | <Hsp> |
---|
| 1752 | <Hsp_num>1</Hsp_num> |
---|
| 1753 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1754 | <Hsp_score>30</Hsp_score> |
---|
| 1755 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1756 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1757 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1758 | <Hsp_hit-from>789086</Hsp_hit-from> |
---|
| 1759 | <Hsp_hit-to>789115</Hsp_hit-to> |
---|
| 1760 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1761 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1762 | <Hsp_identity>30</Hsp_identity> |
---|
| 1763 | <Hsp_positive>30</Hsp_positive> |
---|
| 1764 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1765 | <Hsp_qseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_qseq> |
---|
| 1766 | <Hsp_hseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_hseq> |
---|
| 1767 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1768 | </Hsp> |
---|
| 1769 | </Hit_hsps> |
---|
| 1770 | </Hit> |
---|
| 1771 | </Iteration_hits> |
---|
| 1772 | <Iteration_stat> |
---|
| 1773 | <Statistics> |
---|
| 1774 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1775 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1776 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1777 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1778 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1779 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1780 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1781 | </Statistics> |
---|
| 1782 | </Iteration_stat> |
---|
| 1783 | </Iteration> |
---|
| 1784 | <Iteration> |
---|
| 1785 | <Iteration_iter-num>43</Iteration_iter-num> |
---|
| 1786 | <Iteration_query-ID>lcl|43_0</Iteration_query-ID> |
---|
| 1787 | <Iteration_query-def>42_0.566667</Iteration_query-def> |
---|
| 1788 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1789 | <Iteration_hits> |
---|
| 1790 | <Hit> |
---|
| 1791 | <Hit_num>1</Hit_num> |
---|
| 1792 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1793 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1794 | <Hit_accession>0</Hit_accession> |
---|
| 1795 | <Hit_len>5528445</Hit_len> |
---|
| 1796 | <Hit_hsps> |
---|
| 1797 | <Hsp> |
---|
| 1798 | <Hsp_num>1</Hsp_num> |
---|
| 1799 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1800 | <Hsp_score>30</Hsp_score> |
---|
| 1801 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1802 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1803 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1804 | <Hsp_hit-from>1714771</Hsp_hit-from> |
---|
| 1805 | <Hsp_hit-to>1714800</Hsp_hit-to> |
---|
| 1806 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1807 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1808 | <Hsp_identity>30</Hsp_identity> |
---|
| 1809 | <Hsp_positive>30</Hsp_positive> |
---|
| 1810 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1811 | <Hsp_qseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_qseq> |
---|
| 1812 | <Hsp_hseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_hseq> |
---|
| 1813 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1814 | </Hsp> |
---|
| 1815 | </Hit_hsps> |
---|
| 1816 | </Hit> |
---|
| 1817 | </Iteration_hits> |
---|
| 1818 | <Iteration_stat> |
---|
| 1819 | <Statistics> |
---|
| 1820 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1821 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1822 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1823 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1824 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1825 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1826 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1827 | </Statistics> |
---|
| 1828 | </Iteration_stat> |
---|
| 1829 | </Iteration> |
---|
| 1830 | <Iteration> |
---|
| 1831 | <Iteration_iter-num>44</Iteration_iter-num> |
---|
| 1832 | <Iteration_query-ID>lcl|44_0</Iteration_query-ID> |
---|
| 1833 | <Iteration_query-def>43_0.466667</Iteration_query-def> |
---|
| 1834 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1835 | <Iteration_hits> |
---|
| 1836 | <Hit> |
---|
| 1837 | <Hit_num>1</Hit_num> |
---|
| 1838 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1839 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1840 | <Hit_accession>0</Hit_accession> |
---|
| 1841 | <Hit_len>5528445</Hit_len> |
---|
| 1842 | <Hit_hsps> |
---|
| 1843 | <Hsp> |
---|
| 1844 | <Hsp_num>1</Hsp_num> |
---|
| 1845 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1846 | <Hsp_score>30</Hsp_score> |
---|
| 1847 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1848 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1849 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1850 | <Hsp_hit-from>4272582</Hsp_hit-from> |
---|
| 1851 | <Hsp_hit-to>4272611</Hsp_hit-to> |
---|
| 1852 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1853 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1854 | <Hsp_identity>30</Hsp_identity> |
---|
| 1855 | <Hsp_positive>30</Hsp_positive> |
---|
| 1856 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1857 | <Hsp_qseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_qseq> |
---|
| 1858 | <Hsp_hseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_hseq> |
---|
| 1859 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1860 | </Hsp> |
---|
| 1861 | </Hit_hsps> |
---|
| 1862 | </Hit> |
---|
| 1863 | </Iteration_hits> |
---|
| 1864 | <Iteration_stat> |
---|
| 1865 | <Statistics> |
---|
| 1866 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1867 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1868 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1869 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1870 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1871 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1872 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1873 | </Statistics> |
---|
| 1874 | </Iteration_stat> |
---|
| 1875 | </Iteration> |
---|
| 1876 | <Iteration> |
---|
| 1877 | <Iteration_iter-num>45</Iteration_iter-num> |
---|
| 1878 | <Iteration_query-ID>lcl|45_0</Iteration_query-ID> |
---|
| 1879 | <Iteration_query-def>44_0.433333</Iteration_query-def> |
---|
| 1880 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1881 | <Iteration_hits> |
---|
| 1882 | <Hit> |
---|
| 1883 | <Hit_num>1</Hit_num> |
---|
| 1884 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1885 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1886 | <Hit_accession>0</Hit_accession> |
---|
| 1887 | <Hit_len>5528445</Hit_len> |
---|
| 1888 | <Hit_hsps> |
---|
| 1889 | <Hsp> |
---|
| 1890 | <Hsp_num>1</Hsp_num> |
---|
| 1891 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1892 | <Hsp_score>30</Hsp_score> |
---|
| 1893 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1894 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1895 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1896 | <Hsp_hit-from>5481023</Hsp_hit-from> |
---|
| 1897 | <Hsp_hit-to>5481052</Hsp_hit-to> |
---|
| 1898 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1899 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1900 | <Hsp_identity>30</Hsp_identity> |
---|
| 1901 | <Hsp_positive>30</Hsp_positive> |
---|
| 1902 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1903 | <Hsp_qseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_qseq> |
---|
| 1904 | <Hsp_hseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_hseq> |
---|
| 1905 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1906 | </Hsp> |
---|
| 1907 | </Hit_hsps> |
---|
| 1908 | </Hit> |
---|
| 1909 | </Iteration_hits> |
---|
| 1910 | <Iteration_stat> |
---|
| 1911 | <Statistics> |
---|
| 1912 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 1913 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 1914 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 1915 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 1916 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 1917 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 1918 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 1919 | </Statistics> |
---|
| 1920 | </Iteration_stat> |
---|
| 1921 | </Iteration> |
---|
| 1922 | <Iteration> |
---|
| 1923 | <Iteration_iter-num>46</Iteration_iter-num> |
---|
| 1924 | <Iteration_query-ID>lcl|46_0</Iteration_query-ID> |
---|
| 1925 | <Iteration_query-def>45_0.500000</Iteration_query-def> |
---|
| 1926 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 1927 | <Iteration_hits> |
---|
| 1928 | <Hit> |
---|
| 1929 | <Hit_num>1</Hit_num> |
---|
| 1930 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 1931 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 1932 | <Hit_accession>0</Hit_accession> |
---|
| 1933 | <Hit_len>5528445</Hit_len> |
---|
| 1934 | <Hit_hsps> |
---|
| 1935 | <Hsp> |
---|
| 1936 | <Hsp_num>1</Hsp_num> |
---|
| 1937 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1938 | <Hsp_score>30</Hsp_score> |
---|
| 1939 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1940 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 1941 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 1942 | <Hsp_hit-from>1271829</Hsp_hit-from> |
---|
| 1943 | <Hsp_hit-to>1271858</Hsp_hit-to> |
---|
| 1944 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1945 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 1946 | <Hsp_identity>30</Hsp_identity> |
---|
| 1947 | <Hsp_positive>30</Hsp_positive> |
---|
| 1948 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1949 | <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> |
---|
| 1950 | <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> |
---|
| 1951 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1952 | </Hsp> |
---|
| 1953 | <Hsp> |
---|
| 1954 | <Hsp_num>2</Hsp_num> |
---|
| 1955 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1956 | <Hsp_score>30</Hsp_score> |
---|
| 1957 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1958 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 1959 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 1960 | <Hsp_hit-from>1357952</Hsp_hit-from> |
---|
| 1961 | <Hsp_hit-to>1357981</Hsp_hit-to> |
---|
| 1962 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1963 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 1964 | <Hsp_identity>30</Hsp_identity> |
---|
| 1965 | <Hsp_positive>30</Hsp_positive> |
---|
| 1966 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1967 | <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> |
---|
| 1968 | <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> |
---|
| 1969 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1970 | </Hsp> |
---|
| 1971 | <Hsp> |
---|
| 1972 | <Hsp_num>3</Hsp_num> |
---|
| 1973 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1974 | <Hsp_score>30</Hsp_score> |
---|
| 1975 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1976 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1977 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1978 | <Hsp_hit-from>2310674</Hsp_hit-from> |
---|
| 1979 | <Hsp_hit-to>2310703</Hsp_hit-to> |
---|
| 1980 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1981 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 1982 | <Hsp_identity>30</Hsp_identity> |
---|
| 1983 | <Hsp_positive>30</Hsp_positive> |
---|
| 1984 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 1985 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
| 1986 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
| 1987 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 1988 | </Hsp> |
---|
| 1989 | <Hsp> |
---|
| 1990 | <Hsp_num>4</Hsp_num> |
---|
| 1991 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 1992 | <Hsp_score>30</Hsp_score> |
---|
| 1993 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 1994 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 1995 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 1996 | <Hsp_hit-from>2769319</Hsp_hit-from> |
---|
| 1997 | <Hsp_hit-to>2769348</Hsp_hit-to> |
---|
| 1998 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 1999 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2000 | <Hsp_identity>30</Hsp_identity> |
---|
| 2001 | <Hsp_positive>30</Hsp_positive> |
---|
| 2002 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2003 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
| 2004 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
| 2005 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2006 | </Hsp> |
---|
| 2007 | <Hsp> |
---|
| 2008 | <Hsp_num>5</Hsp_num> |
---|
| 2009 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2010 | <Hsp_score>30</Hsp_score> |
---|
| 2011 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2012 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2013 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2014 | <Hsp_hit-from>2991293</Hsp_hit-from> |
---|
| 2015 | <Hsp_hit-to>2991322</Hsp_hit-to> |
---|
| 2016 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2017 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2018 | <Hsp_identity>30</Hsp_identity> |
---|
| 2019 | <Hsp_positive>30</Hsp_positive> |
---|
| 2020 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2021 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
| 2022 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
| 2023 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2024 | </Hsp> |
---|
| 2025 | </Hit_hsps> |
---|
| 2026 | </Hit> |
---|
| 2027 | </Iteration_hits> |
---|
| 2028 | <Iteration_stat> |
---|
| 2029 | <Statistics> |
---|
| 2030 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2031 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2032 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2033 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2034 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2035 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2036 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2037 | </Statistics> |
---|
| 2038 | </Iteration_stat> |
---|
| 2039 | </Iteration> |
---|
| 2040 | <Iteration> |
---|
| 2041 | <Iteration_iter-num>47</Iteration_iter-num> |
---|
| 2042 | <Iteration_query-ID>lcl|47_0</Iteration_query-ID> |
---|
| 2043 | <Iteration_query-def>46_0.466667</Iteration_query-def> |
---|
| 2044 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2045 | <Iteration_hits> |
---|
| 2046 | <Hit> |
---|
| 2047 | <Hit_num>1</Hit_num> |
---|
| 2048 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2049 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2050 | <Hit_accession>0</Hit_accession> |
---|
| 2051 | <Hit_len>5528445</Hit_len> |
---|
| 2052 | <Hit_hsps> |
---|
| 2053 | <Hsp> |
---|
| 2054 | <Hsp_num>1</Hsp_num> |
---|
| 2055 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2056 | <Hsp_score>30</Hsp_score> |
---|
| 2057 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2058 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2059 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2060 | <Hsp_hit-from>1080570</Hsp_hit-from> |
---|
| 2061 | <Hsp_hit-to>1080599</Hsp_hit-to> |
---|
| 2062 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2063 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2064 | <Hsp_identity>30</Hsp_identity> |
---|
| 2065 | <Hsp_positive>30</Hsp_positive> |
---|
| 2066 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2067 | <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> |
---|
| 2068 | <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> |
---|
| 2069 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2070 | </Hsp> |
---|
| 2071 | <Hsp> |
---|
| 2072 | <Hsp_num>2</Hsp_num> |
---|
| 2073 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2074 | <Hsp_score>30</Hsp_score> |
---|
| 2075 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2076 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2077 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2078 | <Hsp_hit-from>1476177</Hsp_hit-from> |
---|
| 2079 | <Hsp_hit-to>1476206</Hsp_hit-to> |
---|
| 2080 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2081 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2082 | <Hsp_identity>30</Hsp_identity> |
---|
| 2083 | <Hsp_positive>30</Hsp_positive> |
---|
| 2084 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2085 | <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> |
---|
| 2086 | <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> |
---|
| 2087 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2088 | </Hsp> |
---|
| 2089 | </Hit_hsps> |
---|
| 2090 | </Hit> |
---|
| 2091 | </Iteration_hits> |
---|
| 2092 | <Iteration_stat> |
---|
| 2093 | <Statistics> |
---|
| 2094 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2095 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2096 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2097 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2098 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2099 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2100 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2101 | </Statistics> |
---|
| 2102 | </Iteration_stat> |
---|
| 2103 | </Iteration> |
---|
| 2104 | <Iteration> |
---|
| 2105 | <Iteration_iter-num>48</Iteration_iter-num> |
---|
| 2106 | <Iteration_query-ID>lcl|48_0</Iteration_query-ID> |
---|
| 2107 | <Iteration_query-def>47_0.533333</Iteration_query-def> |
---|
| 2108 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2109 | <Iteration_hits> |
---|
| 2110 | <Hit> |
---|
| 2111 | <Hit_num>1</Hit_num> |
---|
| 2112 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2113 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2114 | <Hit_accession>0</Hit_accession> |
---|
| 2115 | <Hit_len>5528445</Hit_len> |
---|
| 2116 | <Hit_hsps> |
---|
| 2117 | <Hsp> |
---|
| 2118 | <Hsp_num>1</Hsp_num> |
---|
| 2119 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2120 | <Hsp_score>30</Hsp_score> |
---|
| 2121 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2122 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2123 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2124 | <Hsp_hit-from>2887871</Hsp_hit-from> |
---|
| 2125 | <Hsp_hit-to>2887900</Hsp_hit-to> |
---|
| 2126 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2127 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2128 | <Hsp_identity>30</Hsp_identity> |
---|
| 2129 | <Hsp_positive>30</Hsp_positive> |
---|
| 2130 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2131 | <Hsp_qseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_qseq> |
---|
| 2132 | <Hsp_hseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_hseq> |
---|
| 2133 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2134 | </Hsp> |
---|
| 2135 | </Hit_hsps> |
---|
| 2136 | </Hit> |
---|
| 2137 | </Iteration_hits> |
---|
| 2138 | <Iteration_stat> |
---|
| 2139 | <Statistics> |
---|
| 2140 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2141 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2142 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2143 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2144 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2145 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2146 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2147 | </Statistics> |
---|
| 2148 | </Iteration_stat> |
---|
| 2149 | </Iteration> |
---|
| 2150 | <Iteration> |
---|
| 2151 | <Iteration_iter-num>50</Iteration_iter-num> |
---|
| 2152 | <Iteration_query-ID>lcl|50_0</Iteration_query-ID> |
---|
| 2153 | <Iteration_query-def>49_0.433333</Iteration_query-def> |
---|
| 2154 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2155 | <Iteration_hits> |
---|
| 2156 | <Hit> |
---|
| 2157 | <Hit_num>1</Hit_num> |
---|
| 2158 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2159 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2160 | <Hit_accession>0</Hit_accession> |
---|
| 2161 | <Hit_len>5528445</Hit_len> |
---|
| 2162 | <Hit_hsps> |
---|
| 2163 | <Hsp> |
---|
| 2164 | <Hsp_num>1</Hsp_num> |
---|
| 2165 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2166 | <Hsp_score>30</Hsp_score> |
---|
| 2167 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2168 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2169 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2170 | <Hsp_hit-from>4152853</Hsp_hit-from> |
---|
| 2171 | <Hsp_hit-to>4152882</Hsp_hit-to> |
---|
| 2172 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2173 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2174 | <Hsp_identity>30</Hsp_identity> |
---|
| 2175 | <Hsp_positive>30</Hsp_positive> |
---|
| 2176 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2177 | <Hsp_qseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_qseq> |
---|
| 2178 | <Hsp_hseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_hseq> |
---|
| 2179 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2180 | </Hsp> |
---|
| 2181 | </Hit_hsps> |
---|
| 2182 | </Hit> |
---|
| 2183 | </Iteration_hits> |
---|
| 2184 | <Iteration_stat> |
---|
| 2185 | <Statistics> |
---|
| 2186 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2187 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2188 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2189 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2190 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2191 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2192 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2193 | </Statistics> |
---|
| 2194 | </Iteration_stat> |
---|
| 2195 | </Iteration> |
---|
| 2196 | <Iteration> |
---|
| 2197 | <Iteration_iter-num>51</Iteration_iter-num> |
---|
| 2198 | <Iteration_query-ID>lcl|51_0</Iteration_query-ID> |
---|
| 2199 | <Iteration_query-def>50_0.466667</Iteration_query-def> |
---|
| 2200 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2201 | <Iteration_hits> |
---|
| 2202 | <Hit> |
---|
| 2203 | <Hit_num>1</Hit_num> |
---|
| 2204 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2205 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2206 | <Hit_accession>0</Hit_accession> |
---|
| 2207 | <Hit_len>5528445</Hit_len> |
---|
| 2208 | <Hit_hsps> |
---|
| 2209 | <Hsp> |
---|
| 2210 | <Hsp_num>1</Hsp_num> |
---|
| 2211 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2212 | <Hsp_score>30</Hsp_score> |
---|
| 2213 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2214 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2215 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2216 | <Hsp_hit-from>3568677</Hsp_hit-from> |
---|
| 2217 | <Hsp_hit-to>3568706</Hsp_hit-to> |
---|
| 2218 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2219 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2220 | <Hsp_identity>30</Hsp_identity> |
---|
| 2221 | <Hsp_positive>30</Hsp_positive> |
---|
| 2222 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2223 | <Hsp_qseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_qseq> |
---|
| 2224 | <Hsp_hseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_hseq> |
---|
| 2225 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2226 | </Hsp> |
---|
| 2227 | </Hit_hsps> |
---|
| 2228 | </Hit> |
---|
| 2229 | </Iteration_hits> |
---|
| 2230 | <Iteration_stat> |
---|
| 2231 | <Statistics> |
---|
| 2232 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2233 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2234 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2235 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2236 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2237 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2238 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2239 | </Statistics> |
---|
| 2240 | </Iteration_stat> |
---|
| 2241 | </Iteration> |
---|
| 2242 | <Iteration> |
---|
| 2243 | <Iteration_iter-num>52</Iteration_iter-num> |
---|
| 2244 | <Iteration_query-ID>lcl|52_0</Iteration_query-ID> |
---|
| 2245 | <Iteration_query-def>51_0.533333</Iteration_query-def> |
---|
| 2246 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2247 | <Iteration_hits> |
---|
| 2248 | <Hit> |
---|
| 2249 | <Hit_num>1</Hit_num> |
---|
| 2250 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2251 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2252 | <Hit_accession>0</Hit_accession> |
---|
| 2253 | <Hit_len>5528445</Hit_len> |
---|
| 2254 | <Hit_hsps> |
---|
| 2255 | <Hsp> |
---|
| 2256 | <Hsp_num>1</Hsp_num> |
---|
| 2257 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2258 | <Hsp_score>30</Hsp_score> |
---|
| 2259 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2260 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2261 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2262 | <Hsp_hit-from>3739788</Hsp_hit-from> |
---|
| 2263 | <Hsp_hit-to>3739817</Hsp_hit-to> |
---|
| 2264 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2265 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2266 | <Hsp_identity>30</Hsp_identity> |
---|
| 2267 | <Hsp_positive>30</Hsp_positive> |
---|
| 2268 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2269 | <Hsp_qseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_qseq> |
---|
| 2270 | <Hsp_hseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_hseq> |
---|
| 2271 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2272 | </Hsp> |
---|
| 2273 | </Hit_hsps> |
---|
| 2274 | </Hit> |
---|
| 2275 | </Iteration_hits> |
---|
| 2276 | <Iteration_stat> |
---|
| 2277 | <Statistics> |
---|
| 2278 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2279 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2280 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2281 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2282 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2283 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2284 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2285 | </Statistics> |
---|
| 2286 | </Iteration_stat> |
---|
| 2287 | </Iteration> |
---|
| 2288 | <Iteration> |
---|
| 2289 | <Iteration_iter-num>53</Iteration_iter-num> |
---|
| 2290 | <Iteration_query-ID>lcl|53_0</Iteration_query-ID> |
---|
| 2291 | <Iteration_query-def>52_0.366667</Iteration_query-def> |
---|
| 2292 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2293 | <Iteration_hits> |
---|
| 2294 | <Hit> |
---|
| 2295 | <Hit_num>1</Hit_num> |
---|
| 2296 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2297 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2298 | <Hit_accession>0</Hit_accession> |
---|
| 2299 | <Hit_len>5528445</Hit_len> |
---|
| 2300 | <Hit_hsps> |
---|
| 2301 | <Hsp> |
---|
| 2302 | <Hsp_num>1</Hsp_num> |
---|
| 2303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2304 | <Hsp_score>30</Hsp_score> |
---|
| 2305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2306 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2307 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2308 | <Hsp_hit-from>3789407</Hsp_hit-from> |
---|
| 2309 | <Hsp_hit-to>3789436</Hsp_hit-to> |
---|
| 2310 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2312 | <Hsp_identity>30</Hsp_identity> |
---|
| 2313 | <Hsp_positive>30</Hsp_positive> |
---|
| 2314 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2315 | <Hsp_qseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_qseq> |
---|
| 2316 | <Hsp_hseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_hseq> |
---|
| 2317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2318 | </Hsp> |
---|
| 2319 | </Hit_hsps> |
---|
| 2320 | </Hit> |
---|
| 2321 | </Iteration_hits> |
---|
| 2322 | <Iteration_stat> |
---|
| 2323 | <Statistics> |
---|
| 2324 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2325 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2326 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2327 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2328 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2329 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2330 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2331 | </Statistics> |
---|
| 2332 | </Iteration_stat> |
---|
| 2333 | </Iteration> |
---|
| 2334 | <Iteration> |
---|
| 2335 | <Iteration_iter-num>55</Iteration_iter-num> |
---|
| 2336 | <Iteration_query-ID>lcl|55_0</Iteration_query-ID> |
---|
| 2337 | <Iteration_query-def>54_0.400000</Iteration_query-def> |
---|
| 2338 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2339 | <Iteration_hits> |
---|
| 2340 | <Hit> |
---|
| 2341 | <Hit_num>1</Hit_num> |
---|
| 2342 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2343 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2344 | <Hit_accession>0</Hit_accession> |
---|
| 2345 | <Hit_len>5528445</Hit_len> |
---|
| 2346 | <Hit_hsps> |
---|
| 2347 | <Hsp> |
---|
| 2348 | <Hsp_num>1</Hsp_num> |
---|
| 2349 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2350 | <Hsp_score>30</Hsp_score> |
---|
| 2351 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2352 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2353 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2354 | <Hsp_hit-from>3161991</Hsp_hit-from> |
---|
| 2355 | <Hsp_hit-to>3162020</Hsp_hit-to> |
---|
| 2356 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2357 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2358 | <Hsp_identity>30</Hsp_identity> |
---|
| 2359 | <Hsp_positive>30</Hsp_positive> |
---|
| 2360 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2361 | <Hsp_qseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_qseq> |
---|
| 2362 | <Hsp_hseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_hseq> |
---|
| 2363 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2364 | </Hsp> |
---|
| 2365 | </Hit_hsps> |
---|
| 2366 | </Hit> |
---|
| 2367 | </Iteration_hits> |
---|
| 2368 | <Iteration_stat> |
---|
| 2369 | <Statistics> |
---|
| 2370 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2371 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2372 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2373 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2374 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2375 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2376 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2377 | </Statistics> |
---|
| 2378 | </Iteration_stat> |
---|
| 2379 | </Iteration> |
---|
| 2380 | <Iteration> |
---|
| 2381 | <Iteration_iter-num>56</Iteration_iter-num> |
---|
| 2382 | <Iteration_query-ID>lcl|56_0</Iteration_query-ID> |
---|
| 2383 | <Iteration_query-def>55_0.466667</Iteration_query-def> |
---|
| 2384 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2385 | <Iteration_hits> |
---|
| 2386 | <Hit> |
---|
| 2387 | <Hit_num>1</Hit_num> |
---|
| 2388 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2389 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2390 | <Hit_accession>0</Hit_accession> |
---|
| 2391 | <Hit_len>5528445</Hit_len> |
---|
| 2392 | <Hit_hsps> |
---|
| 2393 | <Hsp> |
---|
| 2394 | <Hsp_num>1</Hsp_num> |
---|
| 2395 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2396 | <Hsp_score>30</Hsp_score> |
---|
| 2397 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2398 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2399 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2400 | <Hsp_hit-from>4384753</Hsp_hit-from> |
---|
| 2401 | <Hsp_hit-to>4384782</Hsp_hit-to> |
---|
| 2402 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2403 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2404 | <Hsp_identity>30</Hsp_identity> |
---|
| 2405 | <Hsp_positive>30</Hsp_positive> |
---|
| 2406 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2407 | <Hsp_qseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_qseq> |
---|
| 2408 | <Hsp_hseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_hseq> |
---|
| 2409 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2410 | </Hsp> |
---|
| 2411 | </Hit_hsps> |
---|
| 2412 | </Hit> |
---|
| 2413 | </Iteration_hits> |
---|
| 2414 | <Iteration_stat> |
---|
| 2415 | <Statistics> |
---|
| 2416 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2417 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2418 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2419 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2420 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2421 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2422 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2423 | </Statistics> |
---|
| 2424 | </Iteration_stat> |
---|
| 2425 | </Iteration> |
---|
| 2426 | <Iteration> |
---|
| 2427 | <Iteration_iter-num>57</Iteration_iter-num> |
---|
| 2428 | <Iteration_query-ID>lcl|57_0</Iteration_query-ID> |
---|
| 2429 | <Iteration_query-def>56_0.433333</Iteration_query-def> |
---|
| 2430 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2431 | <Iteration_hits> |
---|
| 2432 | <Hit> |
---|
| 2433 | <Hit_num>1</Hit_num> |
---|
| 2434 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2435 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2436 | <Hit_accession>0</Hit_accession> |
---|
| 2437 | <Hit_len>5528445</Hit_len> |
---|
| 2438 | <Hit_hsps> |
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| 2439 | <Hsp> |
---|
| 2440 | <Hsp_num>1</Hsp_num> |
---|
| 2441 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2442 | <Hsp_score>30</Hsp_score> |
---|
| 2443 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2444 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2445 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2446 | <Hsp_hit-from>2915787</Hsp_hit-from> |
---|
| 2447 | <Hsp_hit-to>2915816</Hsp_hit-to> |
---|
| 2448 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2449 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2450 | <Hsp_identity>30</Hsp_identity> |
---|
| 2451 | <Hsp_positive>30</Hsp_positive> |
---|
| 2452 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2453 | <Hsp_qseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_qseq> |
---|
| 2454 | <Hsp_hseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_hseq> |
---|
| 2455 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2456 | </Hsp> |
---|
| 2457 | </Hit_hsps> |
---|
| 2458 | </Hit> |
---|
| 2459 | </Iteration_hits> |
---|
| 2460 | <Iteration_stat> |
---|
| 2461 | <Statistics> |
---|
| 2462 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2463 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2464 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2465 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2466 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2467 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2468 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2469 | </Statistics> |
---|
| 2470 | </Iteration_stat> |
---|
| 2471 | </Iteration> |
---|
| 2472 | <Iteration> |
---|
| 2473 | <Iteration_iter-num>58</Iteration_iter-num> |
---|
| 2474 | <Iteration_query-ID>lcl|58_0</Iteration_query-ID> |
---|
| 2475 | <Iteration_query-def>57_0.566667</Iteration_query-def> |
---|
| 2476 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2477 | <Iteration_hits> |
---|
| 2478 | <Hit> |
---|
| 2479 | <Hit_num>1</Hit_num> |
---|
| 2480 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2481 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2482 | <Hit_accession>0</Hit_accession> |
---|
| 2483 | <Hit_len>5528445</Hit_len> |
---|
| 2484 | <Hit_hsps> |
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| 2485 | <Hsp> |
---|
| 2486 | <Hsp_num>1</Hsp_num> |
---|
| 2487 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2488 | <Hsp_score>30</Hsp_score> |
---|
| 2489 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2490 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2491 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2492 | <Hsp_hit-from>294604</Hsp_hit-from> |
---|
| 2493 | <Hsp_hit-to>294633</Hsp_hit-to> |
---|
| 2494 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2495 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2496 | <Hsp_identity>30</Hsp_identity> |
---|
| 2497 | <Hsp_positive>30</Hsp_positive> |
---|
| 2498 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2499 | <Hsp_qseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_qseq> |
---|
| 2500 | <Hsp_hseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_hseq> |
---|
| 2501 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2502 | </Hsp> |
---|
| 2503 | </Hit_hsps> |
---|
| 2504 | </Hit> |
---|
| 2505 | </Iteration_hits> |
---|
| 2506 | <Iteration_stat> |
---|
| 2507 | <Statistics> |
---|
| 2508 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2509 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2510 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2511 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2512 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2513 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2514 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2515 | </Statistics> |
---|
| 2516 | </Iteration_stat> |
---|
| 2517 | </Iteration> |
---|
| 2518 | <Iteration> |
---|
| 2519 | <Iteration_iter-num>59</Iteration_iter-num> |
---|
| 2520 | <Iteration_query-ID>lcl|59_0</Iteration_query-ID> |
---|
| 2521 | <Iteration_query-def>58_0.300000</Iteration_query-def> |
---|
| 2522 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2523 | <Iteration_hits> |
---|
| 2524 | <Hit> |
---|
| 2525 | <Hit_num>1</Hit_num> |
---|
| 2526 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2527 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2528 | <Hit_accession>0</Hit_accession> |
---|
| 2529 | <Hit_len>5528445</Hit_len> |
---|
| 2530 | <Hit_hsps> |
---|
| 2531 | <Hsp> |
---|
| 2532 | <Hsp_num>1</Hsp_num> |
---|
| 2533 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2534 | <Hsp_score>30</Hsp_score> |
---|
| 2535 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2536 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2537 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2538 | <Hsp_hit-from>1553483</Hsp_hit-from> |
---|
| 2539 | <Hsp_hit-to>1553512</Hsp_hit-to> |
---|
| 2540 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2541 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2542 | <Hsp_identity>30</Hsp_identity> |
---|
| 2543 | <Hsp_positive>30</Hsp_positive> |
---|
| 2544 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2545 | <Hsp_qseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_qseq> |
---|
| 2546 | <Hsp_hseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_hseq> |
---|
| 2547 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2548 | </Hsp> |
---|
| 2549 | </Hit_hsps> |
---|
| 2550 | </Hit> |
---|
| 2551 | </Iteration_hits> |
---|
| 2552 | <Iteration_stat> |
---|
| 2553 | <Statistics> |
---|
| 2554 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2555 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2556 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2557 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2558 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2559 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2560 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2561 | </Statistics> |
---|
| 2562 | </Iteration_stat> |
---|
| 2563 | </Iteration> |
---|
| 2564 | <Iteration> |
---|
| 2565 | <Iteration_iter-num>60</Iteration_iter-num> |
---|
| 2566 | <Iteration_query-ID>lcl|60_0</Iteration_query-ID> |
---|
| 2567 | <Iteration_query-def>59_0.300000</Iteration_query-def> |
---|
| 2568 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2569 | <Iteration_hits> |
---|
| 2570 | <Hit> |
---|
| 2571 | <Hit_num>1</Hit_num> |
---|
| 2572 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2573 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2574 | <Hit_accession>0</Hit_accession> |
---|
| 2575 | <Hit_len>5528445</Hit_len> |
---|
| 2576 | <Hit_hsps> |
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| 2577 | <Hsp> |
---|
| 2578 | <Hsp_num>1</Hsp_num> |
---|
| 2579 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2580 | <Hsp_score>30</Hsp_score> |
---|
| 2581 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2582 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2583 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2584 | <Hsp_hit-from>1351506</Hsp_hit-from> |
---|
| 2585 | <Hsp_hit-to>1351535</Hsp_hit-to> |
---|
| 2586 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2587 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2588 | <Hsp_identity>30</Hsp_identity> |
---|
| 2589 | <Hsp_positive>30</Hsp_positive> |
---|
| 2590 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2591 | <Hsp_qseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_qseq> |
---|
| 2592 | <Hsp_hseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_hseq> |
---|
| 2593 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2594 | </Hsp> |
---|
| 2595 | <Hsp> |
---|
| 2596 | <Hsp_num>2</Hsp_num> |
---|
| 2597 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2598 | <Hsp_score>30</Hsp_score> |
---|
| 2599 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2600 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2601 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2602 | <Hsp_hit-from>2997458</Hsp_hit-from> |
---|
| 2603 | <Hsp_hit-to>2997487</Hsp_hit-to> |
---|
| 2604 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2605 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2606 | <Hsp_identity>30</Hsp_identity> |
---|
| 2607 | <Hsp_positive>30</Hsp_positive> |
---|
| 2608 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2609 | <Hsp_qseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_qseq> |
---|
| 2610 | <Hsp_hseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_hseq> |
---|
| 2611 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2612 | </Hsp> |
---|
| 2613 | </Hit_hsps> |
---|
| 2614 | </Hit> |
---|
| 2615 | </Iteration_hits> |
---|
| 2616 | <Iteration_stat> |
---|
| 2617 | <Statistics> |
---|
| 2618 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2619 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2620 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2621 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2622 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2623 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2624 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2625 | </Statistics> |
---|
| 2626 | </Iteration_stat> |
---|
| 2627 | </Iteration> |
---|
| 2628 | <Iteration> |
---|
| 2629 | <Iteration_iter-num>62</Iteration_iter-num> |
---|
| 2630 | <Iteration_query-ID>lcl|62_0</Iteration_query-ID> |
---|
| 2631 | <Iteration_query-def>61_0.366667</Iteration_query-def> |
---|
| 2632 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2633 | <Iteration_hits> |
---|
| 2634 | <Hit> |
---|
| 2635 | <Hit_num>1</Hit_num> |
---|
| 2636 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2637 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2638 | <Hit_accession>0</Hit_accession> |
---|
| 2639 | <Hit_len>5528445</Hit_len> |
---|
| 2640 | <Hit_hsps> |
---|
| 2641 | <Hsp> |
---|
| 2642 | <Hsp_num>1</Hsp_num> |
---|
| 2643 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2644 | <Hsp_score>30</Hsp_score> |
---|
| 2645 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2646 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2647 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2648 | <Hsp_hit-from>1987157</Hsp_hit-from> |
---|
| 2649 | <Hsp_hit-to>1987186</Hsp_hit-to> |
---|
| 2650 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2651 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2652 | <Hsp_identity>30</Hsp_identity> |
---|
| 2653 | <Hsp_positive>30</Hsp_positive> |
---|
| 2654 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2655 | <Hsp_qseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_qseq> |
---|
| 2656 | <Hsp_hseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_hseq> |
---|
| 2657 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2658 | </Hsp> |
---|
| 2659 | </Hit_hsps> |
---|
| 2660 | </Hit> |
---|
| 2661 | </Iteration_hits> |
---|
| 2662 | <Iteration_stat> |
---|
| 2663 | <Statistics> |
---|
| 2664 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2665 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2666 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2667 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2668 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2669 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2670 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2671 | </Statistics> |
---|
| 2672 | </Iteration_stat> |
---|
| 2673 | </Iteration> |
---|
| 2674 | <Iteration> |
---|
| 2675 | <Iteration_iter-num>63</Iteration_iter-num> |
---|
| 2676 | <Iteration_query-ID>lcl|63_0</Iteration_query-ID> |
---|
| 2677 | <Iteration_query-def>62_0.366667</Iteration_query-def> |
---|
| 2678 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2679 | <Iteration_hits> |
---|
| 2680 | <Hit> |
---|
| 2681 | <Hit_num>1</Hit_num> |
---|
| 2682 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2683 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2684 | <Hit_accession>0</Hit_accession> |
---|
| 2685 | <Hit_len>5528445</Hit_len> |
---|
| 2686 | <Hit_hsps> |
---|
| 2687 | <Hsp> |
---|
| 2688 | <Hsp_num>1</Hsp_num> |
---|
| 2689 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2690 | <Hsp_score>30</Hsp_score> |
---|
| 2691 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2692 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2693 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2694 | <Hsp_hit-from>1667830</Hsp_hit-from> |
---|
| 2695 | <Hsp_hit-to>1667859</Hsp_hit-to> |
---|
| 2696 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2697 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2698 | <Hsp_identity>30</Hsp_identity> |
---|
| 2699 | <Hsp_positive>30</Hsp_positive> |
---|
| 2700 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2701 | <Hsp_qseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_qseq> |
---|
| 2702 | <Hsp_hseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_hseq> |
---|
| 2703 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2704 | </Hsp> |
---|
| 2705 | </Hit_hsps> |
---|
| 2706 | </Hit> |
---|
| 2707 | </Iteration_hits> |
---|
| 2708 | <Iteration_stat> |
---|
| 2709 | <Statistics> |
---|
| 2710 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2711 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2712 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2713 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2714 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2715 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2716 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2717 | </Statistics> |
---|
| 2718 | </Iteration_stat> |
---|
| 2719 | </Iteration> |
---|
| 2720 | <Iteration> |
---|
| 2721 | <Iteration_iter-num>64</Iteration_iter-num> |
---|
| 2722 | <Iteration_query-ID>lcl|64_0</Iteration_query-ID> |
---|
| 2723 | <Iteration_query-def>63_0.566667</Iteration_query-def> |
---|
| 2724 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2725 | <Iteration_hits> |
---|
| 2726 | <Hit> |
---|
| 2727 | <Hit_num>1</Hit_num> |
---|
| 2728 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2729 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2730 | <Hit_accession>0</Hit_accession> |
---|
| 2731 | <Hit_len>5528445</Hit_len> |
---|
| 2732 | <Hit_hsps> |
---|
| 2733 | <Hsp> |
---|
| 2734 | <Hsp_num>1</Hsp_num> |
---|
| 2735 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2736 | <Hsp_score>30</Hsp_score> |
---|
| 2737 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2738 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2739 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2740 | <Hsp_hit-from>231418</Hsp_hit-from> |
---|
| 2741 | <Hsp_hit-to>231447</Hsp_hit-to> |
---|
| 2742 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2743 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2744 | <Hsp_identity>30</Hsp_identity> |
---|
| 2745 | <Hsp_positive>30</Hsp_positive> |
---|
| 2746 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2747 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
| 2748 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
| 2749 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2750 | </Hsp> |
---|
| 2751 | <Hsp> |
---|
| 2752 | <Hsp_num>2</Hsp_num> |
---|
| 2753 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2754 | <Hsp_score>30</Hsp_score> |
---|
| 2755 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2756 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2757 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2758 | <Hsp_hit-from>3516862</Hsp_hit-from> |
---|
| 2759 | <Hsp_hit-to>3516891</Hsp_hit-to> |
---|
| 2760 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2761 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2762 | <Hsp_identity>30</Hsp_identity> |
---|
| 2763 | <Hsp_positive>30</Hsp_positive> |
---|
| 2764 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2765 | <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> |
---|
| 2766 | <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> |
---|
| 2767 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2768 | </Hsp> |
---|
| 2769 | <Hsp> |
---|
| 2770 | <Hsp_num>3</Hsp_num> |
---|
| 2771 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2772 | <Hsp_score>30</Hsp_score> |
---|
| 2773 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2774 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2775 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2776 | <Hsp_hit-from>4226650</Hsp_hit-from> |
---|
| 2777 | <Hsp_hit-to>4226679</Hsp_hit-to> |
---|
| 2778 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2779 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2780 | <Hsp_identity>30</Hsp_identity> |
---|
| 2781 | <Hsp_positive>30</Hsp_positive> |
---|
| 2782 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2783 | <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> |
---|
| 2784 | <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> |
---|
| 2785 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2786 | </Hsp> |
---|
| 2787 | <Hsp> |
---|
| 2788 | <Hsp_num>4</Hsp_num> |
---|
| 2789 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2790 | <Hsp_score>30</Hsp_score> |
---|
| 2791 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2792 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2793 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2794 | <Hsp_hit-from>4808457</Hsp_hit-from> |
---|
| 2795 | <Hsp_hit-to>4808486</Hsp_hit-to> |
---|
| 2796 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2797 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2798 | <Hsp_identity>30</Hsp_identity> |
---|
| 2799 | <Hsp_positive>30</Hsp_positive> |
---|
| 2800 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2801 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
| 2802 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
| 2803 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2804 | </Hsp> |
---|
| 2805 | <Hsp> |
---|
| 2806 | <Hsp_num>5</Hsp_num> |
---|
| 2807 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2808 | <Hsp_score>30</Hsp_score> |
---|
| 2809 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2810 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2811 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2812 | <Hsp_hit-from>4904735</Hsp_hit-from> |
---|
| 2813 | <Hsp_hit-to>4904764</Hsp_hit-to> |
---|
| 2814 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2815 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2816 | <Hsp_identity>30</Hsp_identity> |
---|
| 2817 | <Hsp_positive>30</Hsp_positive> |
---|
| 2818 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2819 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
| 2820 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
| 2821 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2822 | </Hsp> |
---|
| 2823 | <Hsp> |
---|
| 2824 | <Hsp_num>6</Hsp_num> |
---|
| 2825 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2826 | <Hsp_score>30</Hsp_score> |
---|
| 2827 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2828 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2829 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2830 | <Hsp_hit-from>5048915</Hsp_hit-from> |
---|
| 2831 | <Hsp_hit-to>5048944</Hsp_hit-to> |
---|
| 2832 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2833 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2834 | <Hsp_identity>30</Hsp_identity> |
---|
| 2835 | <Hsp_positive>30</Hsp_positive> |
---|
| 2836 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2837 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
| 2838 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
| 2839 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2840 | </Hsp> |
---|
| 2841 | <Hsp> |
---|
| 2842 | <Hsp_num>7</Hsp_num> |
---|
| 2843 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2844 | <Hsp_score>30</Hsp_score> |
---|
| 2845 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2846 | <Hsp_query-from>30</Hsp_query-from> |
---|
| 2847 | <Hsp_query-to>1</Hsp_query-to> |
---|
| 2848 | <Hsp_hit-from>5089922</Hsp_hit-from> |
---|
| 2849 | <Hsp_hit-to>5089951</Hsp_hit-to> |
---|
| 2850 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2851 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
| 2852 | <Hsp_identity>30</Hsp_identity> |
---|
| 2853 | <Hsp_positive>30</Hsp_positive> |
---|
| 2854 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2855 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
| 2856 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
| 2857 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2858 | </Hsp> |
---|
| 2859 | </Hit_hsps> |
---|
| 2860 | </Hit> |
---|
| 2861 | </Iteration_hits> |
---|
| 2862 | <Iteration_stat> |
---|
| 2863 | <Statistics> |
---|
| 2864 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2865 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2866 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2867 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2868 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2869 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2870 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2871 | </Statistics> |
---|
| 2872 | </Iteration_stat> |
---|
| 2873 | </Iteration> |
---|
| 2874 | <Iteration> |
---|
| 2875 | <Iteration_iter-num>65</Iteration_iter-num> |
---|
| 2876 | <Iteration_query-ID>lcl|65_0</Iteration_query-ID> |
---|
| 2877 | <Iteration_query-def>64_0.500000</Iteration_query-def> |
---|
| 2878 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2879 | <Iteration_hits> |
---|
| 2880 | <Hit> |
---|
| 2881 | <Hit_num>1</Hit_num> |
---|
| 2882 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2883 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2884 | <Hit_accession>0</Hit_accession> |
---|
| 2885 | <Hit_len>5528445</Hit_len> |
---|
| 2886 | <Hit_hsps> |
---|
| 2887 | <Hsp> |
---|
| 2888 | <Hsp_num>1</Hsp_num> |
---|
| 2889 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2890 | <Hsp_score>30</Hsp_score> |
---|
| 2891 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2892 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2893 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2894 | <Hsp_hit-from>5440369</Hsp_hit-from> |
---|
| 2895 | <Hsp_hit-to>5440398</Hsp_hit-to> |
---|
| 2896 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2897 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2898 | <Hsp_identity>30</Hsp_identity> |
---|
| 2899 | <Hsp_positive>30</Hsp_positive> |
---|
| 2900 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2901 | <Hsp_qseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_qseq> |
---|
| 2902 | <Hsp_hseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_hseq> |
---|
| 2903 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2904 | </Hsp> |
---|
| 2905 | </Hit_hsps> |
---|
| 2906 | </Hit> |
---|
| 2907 | </Iteration_hits> |
---|
| 2908 | <Iteration_stat> |
---|
| 2909 | <Statistics> |
---|
| 2910 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2911 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2912 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2913 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2914 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2915 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2916 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2917 | </Statistics> |
---|
| 2918 | </Iteration_stat> |
---|
| 2919 | </Iteration> |
---|
| 2920 | <Iteration> |
---|
| 2921 | <Iteration_iter-num>66</Iteration_iter-num> |
---|
| 2922 | <Iteration_query-ID>lcl|66_0</Iteration_query-ID> |
---|
| 2923 | <Iteration_query-def>65_0.533333</Iteration_query-def> |
---|
| 2924 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2925 | <Iteration_hits> |
---|
| 2926 | <Hit> |
---|
| 2927 | <Hit_num>1</Hit_num> |
---|
| 2928 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2929 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2930 | <Hit_accession>0</Hit_accession> |
---|
| 2931 | <Hit_len>5528445</Hit_len> |
---|
| 2932 | <Hit_hsps> |
---|
| 2933 | <Hsp> |
---|
| 2934 | <Hsp_num>1</Hsp_num> |
---|
| 2935 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2936 | <Hsp_score>30</Hsp_score> |
---|
| 2937 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2938 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2939 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2940 | <Hsp_hit-from>3963858</Hsp_hit-from> |
---|
| 2941 | <Hsp_hit-to>3963887</Hsp_hit-to> |
---|
| 2942 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2943 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2944 | <Hsp_identity>30</Hsp_identity> |
---|
| 2945 | <Hsp_positive>30</Hsp_positive> |
---|
| 2946 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2947 | <Hsp_qseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_qseq> |
---|
| 2948 | <Hsp_hseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_hseq> |
---|
| 2949 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2950 | </Hsp> |
---|
| 2951 | </Hit_hsps> |
---|
| 2952 | </Hit> |
---|
| 2953 | </Iteration_hits> |
---|
| 2954 | <Iteration_stat> |
---|
| 2955 | <Statistics> |
---|
| 2956 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 2957 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 2958 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 2959 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 2960 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 2961 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 2962 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 2963 | </Statistics> |
---|
| 2964 | </Iteration_stat> |
---|
| 2965 | </Iteration> |
---|
| 2966 | <Iteration> |
---|
| 2967 | <Iteration_iter-num>67</Iteration_iter-num> |
---|
| 2968 | <Iteration_query-ID>lcl|67_0</Iteration_query-ID> |
---|
| 2969 | <Iteration_query-def>66_0.466667</Iteration_query-def> |
---|
| 2970 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 2971 | <Iteration_hits> |
---|
| 2972 | <Hit> |
---|
| 2973 | <Hit_num>1</Hit_num> |
---|
| 2974 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 2975 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 2976 | <Hit_accession>0</Hit_accession> |
---|
| 2977 | <Hit_len>5528445</Hit_len> |
---|
| 2978 | <Hit_hsps> |
---|
| 2979 | <Hsp> |
---|
| 2980 | <Hsp_num>1</Hsp_num> |
---|
| 2981 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 2982 | <Hsp_score>30</Hsp_score> |
---|
| 2983 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 2984 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 2985 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 2986 | <Hsp_hit-from>4142497</Hsp_hit-from> |
---|
| 2987 | <Hsp_hit-to>4142526</Hsp_hit-to> |
---|
| 2988 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 2989 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 2990 | <Hsp_identity>30</Hsp_identity> |
---|
| 2991 | <Hsp_positive>30</Hsp_positive> |
---|
| 2992 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 2993 | <Hsp_qseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_qseq> |
---|
| 2994 | <Hsp_hseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_hseq> |
---|
| 2995 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 2996 | </Hsp> |
---|
| 2997 | </Hit_hsps> |
---|
| 2998 | </Hit> |
---|
| 2999 | </Iteration_hits> |
---|
| 3000 | <Iteration_stat> |
---|
| 3001 | <Statistics> |
---|
| 3002 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3003 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3004 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3005 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3006 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3007 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3008 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3009 | </Statistics> |
---|
| 3010 | </Iteration_stat> |
---|
| 3011 | </Iteration> |
---|
| 3012 | <Iteration> |
---|
| 3013 | <Iteration_iter-num>68</Iteration_iter-num> |
---|
| 3014 | <Iteration_query-ID>lcl|68_0</Iteration_query-ID> |
---|
| 3015 | <Iteration_query-def>67_0.400000</Iteration_query-def> |
---|
| 3016 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3017 | <Iteration_hits> |
---|
| 3018 | <Hit> |
---|
| 3019 | <Hit_num>1</Hit_num> |
---|
| 3020 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3021 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3022 | <Hit_accession>0</Hit_accession> |
---|
| 3023 | <Hit_len>5528445</Hit_len> |
---|
| 3024 | <Hit_hsps> |
---|
| 3025 | <Hsp> |
---|
| 3026 | <Hsp_num>1</Hsp_num> |
---|
| 3027 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3028 | <Hsp_score>30</Hsp_score> |
---|
| 3029 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3030 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3031 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3032 | <Hsp_hit-from>3532236</Hsp_hit-from> |
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| 3033 | <Hsp_hit-to>3532265</Hsp_hit-to> |
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| 3034 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3035 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3036 | <Hsp_identity>30</Hsp_identity> |
---|
| 3037 | <Hsp_positive>30</Hsp_positive> |
---|
| 3038 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3039 | <Hsp_qseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_qseq> |
---|
| 3040 | <Hsp_hseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_hseq> |
---|
| 3041 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3042 | </Hsp> |
---|
| 3043 | </Hit_hsps> |
---|
| 3044 | </Hit> |
---|
| 3045 | </Iteration_hits> |
---|
| 3046 | <Iteration_stat> |
---|
| 3047 | <Statistics> |
---|
| 3048 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3049 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3050 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3051 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3052 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3053 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3054 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3055 | </Statistics> |
---|
| 3056 | </Iteration_stat> |
---|
| 3057 | </Iteration> |
---|
| 3058 | <Iteration> |
---|
| 3059 | <Iteration_iter-num>69</Iteration_iter-num> |
---|
| 3060 | <Iteration_query-ID>lcl|69_0</Iteration_query-ID> |
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| 3061 | <Iteration_query-def>68_0.566667</Iteration_query-def> |
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| 3062 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3063 | <Iteration_hits> |
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| 3064 | <Hit> |
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| 3065 | <Hit_num>1</Hit_num> |
---|
| 3066 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3067 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3068 | <Hit_accession>0</Hit_accession> |
---|
| 3069 | <Hit_len>5528445</Hit_len> |
---|
| 3070 | <Hit_hsps> |
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| 3071 | <Hsp> |
---|
| 3072 | <Hsp_num>1</Hsp_num> |
---|
| 3073 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3074 | <Hsp_score>30</Hsp_score> |
---|
| 3075 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3076 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3077 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3078 | <Hsp_hit-from>779994</Hsp_hit-from> |
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| 3079 | <Hsp_hit-to>780023</Hsp_hit-to> |
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| 3080 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3081 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3082 | <Hsp_identity>30</Hsp_identity> |
---|
| 3083 | <Hsp_positive>30</Hsp_positive> |
---|
| 3084 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3085 | <Hsp_qseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_qseq> |
---|
| 3086 | <Hsp_hseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_hseq> |
---|
| 3087 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3088 | </Hsp> |
---|
| 3089 | </Hit_hsps> |
---|
| 3090 | </Hit> |
---|
| 3091 | </Iteration_hits> |
---|
| 3092 | <Iteration_stat> |
---|
| 3093 | <Statistics> |
---|
| 3094 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3095 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3096 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3097 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3098 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3099 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3100 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3101 | </Statistics> |
---|
| 3102 | </Iteration_stat> |
---|
| 3103 | </Iteration> |
---|
| 3104 | <Iteration> |
---|
| 3105 | <Iteration_iter-num>71</Iteration_iter-num> |
---|
| 3106 | <Iteration_query-ID>lcl|71_0</Iteration_query-ID> |
---|
| 3107 | <Iteration_query-def>70_0.466667</Iteration_query-def> |
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| 3108 | <Iteration_query-len>30</Iteration_query-len> |
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| 3109 | <Iteration_hits> |
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| 3110 | <Hit> |
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| 3111 | <Hit_num>1</Hit_num> |
---|
| 3112 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3113 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3114 | <Hit_accession>0</Hit_accession> |
---|
| 3115 | <Hit_len>5528445</Hit_len> |
---|
| 3116 | <Hit_hsps> |
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| 3117 | <Hsp> |
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| 3118 | <Hsp_num>1</Hsp_num> |
---|
| 3119 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3120 | <Hsp_score>30</Hsp_score> |
---|
| 3121 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3122 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3123 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3124 | <Hsp_hit-from>1317239</Hsp_hit-from> |
---|
| 3125 | <Hsp_hit-to>1317268</Hsp_hit-to> |
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| 3126 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3127 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3128 | <Hsp_identity>30</Hsp_identity> |
---|
| 3129 | <Hsp_positive>30</Hsp_positive> |
---|
| 3130 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3131 | <Hsp_qseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_qseq> |
---|
| 3132 | <Hsp_hseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_hseq> |
---|
| 3133 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3134 | </Hsp> |
---|
| 3135 | </Hit_hsps> |
---|
| 3136 | </Hit> |
---|
| 3137 | </Iteration_hits> |
---|
| 3138 | <Iteration_stat> |
---|
| 3139 | <Statistics> |
---|
| 3140 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3141 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3142 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3143 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3144 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3145 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3146 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3147 | </Statistics> |
---|
| 3148 | </Iteration_stat> |
---|
| 3149 | </Iteration> |
---|
| 3150 | <Iteration> |
---|
| 3151 | <Iteration_iter-num>72</Iteration_iter-num> |
---|
| 3152 | <Iteration_query-ID>lcl|72_0</Iteration_query-ID> |
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| 3153 | <Iteration_query-def>71_0.533333</Iteration_query-def> |
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| 3154 | <Iteration_query-len>30</Iteration_query-len> |
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| 3155 | <Iteration_hits> |
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| 3156 | <Hit> |
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| 3157 | <Hit_num>1</Hit_num> |
---|
| 3158 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3159 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3160 | <Hit_accession>0</Hit_accession> |
---|
| 3161 | <Hit_len>5528445</Hit_len> |
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| 3162 | <Hit_hsps> |
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| 3163 | <Hsp> |
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| 3164 | <Hsp_num>1</Hsp_num> |
---|
| 3165 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3166 | <Hsp_score>30</Hsp_score> |
---|
| 3167 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3168 | <Hsp_query-from>1</Hsp_query-from> |
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| 3169 | <Hsp_query-to>30</Hsp_query-to> |
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| 3170 | <Hsp_hit-from>5080463</Hsp_hit-from> |
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| 3171 | <Hsp_hit-to>5080492</Hsp_hit-to> |
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| 3172 | <Hsp_query-frame>1</Hsp_query-frame> |
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| 3173 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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| 3174 | <Hsp_identity>30</Hsp_identity> |
---|
| 3175 | <Hsp_positive>30</Hsp_positive> |
---|
| 3176 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3177 | <Hsp_qseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_qseq> |
---|
| 3178 | <Hsp_hseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_hseq> |
---|
| 3179 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3180 | </Hsp> |
---|
| 3181 | </Hit_hsps> |
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| 3182 | </Hit> |
---|
| 3183 | </Iteration_hits> |
---|
| 3184 | <Iteration_stat> |
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| 3185 | <Statistics> |
---|
| 3186 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3187 | <Statistics_db-len>5528445</Statistics_db-len> |
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| 3188 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3189 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3190 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3191 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3192 | <Statistics_entropy>1.31</Statistics_entropy> |
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| 3193 | </Statistics> |
---|
| 3194 | </Iteration_stat> |
---|
| 3195 | </Iteration> |
---|
| 3196 | <Iteration> |
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| 3197 | <Iteration_iter-num>73</Iteration_iter-num> |
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| 3198 | <Iteration_query-ID>lcl|73_0</Iteration_query-ID> |
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| 3199 | <Iteration_query-def>72_0.533333</Iteration_query-def> |
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| 3200 | <Iteration_query-len>30</Iteration_query-len> |
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| 3201 | <Iteration_hits> |
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| 3202 | <Hit> |
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| 3203 | <Hit_num>1</Hit_num> |
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| 3204 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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| 3205 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 3206 | <Hit_accession>0</Hit_accession> |
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| 3207 | <Hit_len>5528445</Hit_len> |
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| 3208 | <Hit_hsps> |
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| 3209 | <Hsp> |
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| 3210 | <Hsp_num>1</Hsp_num> |
---|
| 3211 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3212 | <Hsp_score>30</Hsp_score> |
---|
| 3213 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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| 3214 | <Hsp_query-from>1</Hsp_query-from> |
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| 3215 | <Hsp_query-to>30</Hsp_query-to> |
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| 3216 | <Hsp_hit-from>3605409</Hsp_hit-from> |
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| 3217 | <Hsp_hit-to>3605438</Hsp_hit-to> |
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| 3218 | <Hsp_query-frame>1</Hsp_query-frame> |
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| 3219 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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| 3220 | <Hsp_identity>30</Hsp_identity> |
---|
| 3221 | <Hsp_positive>30</Hsp_positive> |
---|
| 3222 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3223 | <Hsp_qseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_qseq> |
---|
| 3224 | <Hsp_hseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_hseq> |
---|
| 3225 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3226 | </Hsp> |
---|
| 3227 | </Hit_hsps> |
---|
| 3228 | </Hit> |
---|
| 3229 | </Iteration_hits> |
---|
| 3230 | <Iteration_stat> |
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| 3231 | <Statistics> |
---|
| 3232 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3233 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3234 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3235 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3236 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3237 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3238 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3239 | </Statistics> |
---|
| 3240 | </Iteration_stat> |
---|
| 3241 | </Iteration> |
---|
| 3242 | <Iteration> |
---|
| 3243 | <Iteration_iter-num>74</Iteration_iter-num> |
---|
| 3244 | <Iteration_query-ID>lcl|74_0</Iteration_query-ID> |
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| 3245 | <Iteration_query-def>73_0.500000</Iteration_query-def> |
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| 3246 | <Iteration_query-len>30</Iteration_query-len> |
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| 3247 | <Iteration_hits> |
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| 3249 | <Hit_num>1</Hit_num> |
---|
| 3250 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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| 3251 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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| 3252 | <Hit_accession>0</Hit_accession> |
---|
| 3253 | <Hit_len>5528445</Hit_len> |
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| 3254 | <Hit_hsps> |
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| 3255 | <Hsp> |
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| 3256 | <Hsp_num>1</Hsp_num> |
---|
| 3257 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3258 | <Hsp_score>30</Hsp_score> |
---|
| 3259 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3260 | <Hsp_query-from>1</Hsp_query-from> |
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| 3261 | <Hsp_query-to>30</Hsp_query-to> |
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| 3262 | <Hsp_hit-from>3280815</Hsp_hit-from> |
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| 3263 | <Hsp_hit-to>3280844</Hsp_hit-to> |
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| 3264 | <Hsp_query-frame>1</Hsp_query-frame> |
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| 3265 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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| 3266 | <Hsp_identity>30</Hsp_identity> |
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| 3267 | <Hsp_positive>30</Hsp_positive> |
---|
| 3268 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3269 | <Hsp_qseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_qseq> |
---|
| 3270 | <Hsp_hseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_hseq> |
---|
| 3271 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3272 | </Hsp> |
---|
| 3273 | </Hit_hsps> |
---|
| 3274 | </Hit> |
---|
| 3275 | </Iteration_hits> |
---|
| 3276 | <Iteration_stat> |
---|
| 3277 | <Statistics> |
---|
| 3278 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3279 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3280 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3281 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3282 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3283 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3284 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3285 | </Statistics> |
---|
| 3286 | </Iteration_stat> |
---|
| 3287 | </Iteration> |
---|
| 3288 | <Iteration> |
---|
| 3289 | <Iteration_iter-num>76</Iteration_iter-num> |
---|
| 3290 | <Iteration_query-ID>lcl|76_0</Iteration_query-ID> |
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| 3291 | <Iteration_query-def>75_0.533333</Iteration_query-def> |
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| 3292 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3293 | <Iteration_hits> |
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| 3294 | <Hit> |
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| 3295 | <Hit_num>1</Hit_num> |
---|
| 3296 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3297 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3298 | <Hit_accession>0</Hit_accession> |
---|
| 3299 | <Hit_len>5528445</Hit_len> |
---|
| 3300 | <Hit_hsps> |
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| 3301 | <Hsp> |
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| 3302 | <Hsp_num>1</Hsp_num> |
---|
| 3303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3304 | <Hsp_score>30</Hsp_score> |
---|
| 3305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3306 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3307 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3308 | <Hsp_hit-from>2230266</Hsp_hit-from> |
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| 3309 | <Hsp_hit-to>2230295</Hsp_hit-to> |
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| 3310 | <Hsp_query-frame>1</Hsp_query-frame> |
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| 3311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3312 | <Hsp_identity>30</Hsp_identity> |
---|
| 3313 | <Hsp_positive>30</Hsp_positive> |
---|
| 3314 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3315 | <Hsp_qseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_qseq> |
---|
| 3316 | <Hsp_hseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_hseq> |
---|
| 3317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3318 | </Hsp> |
---|
| 3319 | </Hit_hsps> |
---|
| 3320 | </Hit> |
---|
| 3321 | </Iteration_hits> |
---|
| 3322 | <Iteration_stat> |
---|
| 3323 | <Statistics> |
---|
| 3324 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3325 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3326 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3327 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3328 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3329 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3330 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3331 | </Statistics> |
---|
| 3332 | </Iteration_stat> |
---|
| 3333 | </Iteration> |
---|
| 3334 | <Iteration> |
---|
| 3335 | <Iteration_iter-num>77</Iteration_iter-num> |
---|
| 3336 | <Iteration_query-ID>lcl|77_0</Iteration_query-ID> |
---|
| 3337 | <Iteration_query-def>76_0.600000</Iteration_query-def> |
---|
| 3338 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3339 | <Iteration_hits> |
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| 3340 | <Hit> |
---|
| 3341 | <Hit_num>1</Hit_num> |
---|
| 3342 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3343 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3344 | <Hit_accession>0</Hit_accession> |
---|
| 3345 | <Hit_len>5528445</Hit_len> |
---|
| 3346 | <Hit_hsps> |
---|
| 3347 | <Hsp> |
---|
| 3348 | <Hsp_num>1</Hsp_num> |
---|
| 3349 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3350 | <Hsp_score>30</Hsp_score> |
---|
| 3351 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3352 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3353 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3354 | <Hsp_hit-from>462631</Hsp_hit-from> |
---|
| 3355 | <Hsp_hit-to>462660</Hsp_hit-to> |
---|
| 3356 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3357 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3358 | <Hsp_identity>30</Hsp_identity> |
---|
| 3359 | <Hsp_positive>30</Hsp_positive> |
---|
| 3360 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3361 | <Hsp_qseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_qseq> |
---|
| 3362 | <Hsp_hseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_hseq> |
---|
| 3363 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3364 | </Hsp> |
---|
| 3365 | </Hit_hsps> |
---|
| 3366 | </Hit> |
---|
| 3367 | </Iteration_hits> |
---|
| 3368 | <Iteration_stat> |
---|
| 3369 | <Statistics> |
---|
| 3370 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3371 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3372 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3373 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3374 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3375 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3376 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3377 | </Statistics> |
---|
| 3378 | </Iteration_stat> |
---|
| 3379 | </Iteration> |
---|
| 3380 | <Iteration> |
---|
| 3381 | <Iteration_iter-num>78</Iteration_iter-num> |
---|
| 3382 | <Iteration_query-ID>lcl|78_0</Iteration_query-ID> |
---|
| 3383 | <Iteration_query-def>77_0.700000</Iteration_query-def> |
---|
| 3384 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3385 | <Iteration_hits> |
---|
| 3386 | <Hit> |
---|
| 3387 | <Hit_num>1</Hit_num> |
---|
| 3388 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3389 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3390 | <Hit_accession>0</Hit_accession> |
---|
| 3391 | <Hit_len>5528445</Hit_len> |
---|
| 3392 | <Hit_hsps> |
---|
| 3393 | <Hsp> |
---|
| 3394 | <Hsp_num>1</Hsp_num> |
---|
| 3395 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3396 | <Hsp_score>30</Hsp_score> |
---|
| 3397 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3398 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3399 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3400 | <Hsp_hit-from>2939076</Hsp_hit-from> |
---|
| 3401 | <Hsp_hit-to>2939105</Hsp_hit-to> |
---|
| 3402 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3403 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3404 | <Hsp_identity>30</Hsp_identity> |
---|
| 3405 | <Hsp_positive>30</Hsp_positive> |
---|
| 3406 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3407 | <Hsp_qseq>GAGCTGCAACGCGGTCAGCCAGCTGGCGGT</Hsp_qseq> |
---|
| 3408 | <Hsp_hseq>GAGCTGCAACGCGGTCAGCCAGCTGGCGGT</Hsp_hseq> |
---|
| 3409 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3410 | </Hsp> |
---|
| 3411 | </Hit_hsps> |
---|
| 3412 | </Hit> |
---|
| 3413 | </Iteration_hits> |
---|
| 3414 | <Iteration_stat> |
---|
| 3415 | <Statistics> |
---|
| 3416 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3417 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3418 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3419 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3420 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3421 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3422 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3423 | </Statistics> |
---|
| 3424 | </Iteration_stat> |
---|
| 3425 | </Iteration> |
---|
| 3426 | <Iteration> |
---|
| 3427 | <Iteration_iter-num>79</Iteration_iter-num> |
---|
| 3428 | <Iteration_query-ID>lcl|79_0</Iteration_query-ID> |
---|
| 3429 | <Iteration_query-def>78_0.566667</Iteration_query-def> |
---|
| 3430 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3431 | <Iteration_hits> |
---|
| 3432 | <Hit> |
---|
| 3433 | <Hit_num>1</Hit_num> |
---|
| 3434 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3435 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3436 | <Hit_accession>0</Hit_accession> |
---|
| 3437 | <Hit_len>5528445</Hit_len> |
---|
| 3438 | <Hit_hsps> |
---|
| 3439 | <Hsp> |
---|
| 3440 | <Hsp_num>1</Hsp_num> |
---|
| 3441 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3442 | <Hsp_score>30</Hsp_score> |
---|
| 3443 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3444 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3445 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3446 | <Hsp_hit-from>5422053</Hsp_hit-from> |
---|
| 3447 | <Hsp_hit-to>5422082</Hsp_hit-to> |
---|
| 3448 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3449 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3450 | <Hsp_identity>30</Hsp_identity> |
---|
| 3451 | <Hsp_positive>30</Hsp_positive> |
---|
| 3452 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3453 | <Hsp_qseq>CGGAGTATCCGTTCCCCAACGACAAGCATC</Hsp_qseq> |
---|
| 3454 | <Hsp_hseq>CGGAGTATCCGTTCCCCAACGACAAGCATC</Hsp_hseq> |
---|
| 3455 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3456 | </Hsp> |
---|
| 3457 | </Hit_hsps> |
---|
| 3458 | </Hit> |
---|
| 3459 | </Iteration_hits> |
---|
| 3460 | <Iteration_stat> |
---|
| 3461 | <Statistics> |
---|
| 3462 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3463 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3464 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3465 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3466 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3467 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3468 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3469 | </Statistics> |
---|
| 3470 | </Iteration_stat> |
---|
| 3471 | </Iteration> |
---|
| 3472 | <Iteration> |
---|
| 3473 | <Iteration_iter-num>80</Iteration_iter-num> |
---|
| 3474 | <Iteration_query-ID>lcl|80_0</Iteration_query-ID> |
---|
| 3475 | <Iteration_query-def>79_0.500000</Iteration_query-def> |
---|
| 3476 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3477 | <Iteration_hits> |
---|
| 3478 | <Hit> |
---|
| 3479 | <Hit_num>1</Hit_num> |
---|
| 3480 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3481 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3482 | <Hit_accession>0</Hit_accession> |
---|
| 3483 | <Hit_len>5528445</Hit_len> |
---|
| 3484 | <Hit_hsps> |
---|
| 3485 | <Hsp> |
---|
| 3486 | <Hsp_num>1</Hsp_num> |
---|
| 3487 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3488 | <Hsp_score>30</Hsp_score> |
---|
| 3489 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3490 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3491 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3492 | <Hsp_hit-from>4387420</Hsp_hit-from> |
---|
| 3493 | <Hsp_hit-to>4387449</Hsp_hit-to> |
---|
| 3494 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3495 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3496 | <Hsp_identity>30</Hsp_identity> |
---|
| 3497 | <Hsp_positive>30</Hsp_positive> |
---|
| 3498 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3499 | <Hsp_qseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_qseq> |
---|
| 3500 | <Hsp_hseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_hseq> |
---|
| 3501 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3502 | </Hsp> |
---|
| 3503 | </Hit_hsps> |
---|
| 3504 | </Hit> |
---|
| 3505 | </Iteration_hits> |
---|
| 3506 | <Iteration_stat> |
---|
| 3507 | <Statistics> |
---|
| 3508 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3509 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3510 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3511 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3512 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3513 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3514 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3515 | </Statistics> |
---|
| 3516 | </Iteration_stat> |
---|
| 3517 | </Iteration> |
---|
| 3518 | <Iteration> |
---|
| 3519 | <Iteration_iter-num>82</Iteration_iter-num> |
---|
| 3520 | <Iteration_query-ID>lcl|82_0</Iteration_query-ID> |
---|
| 3521 | <Iteration_query-def>81_0.433333</Iteration_query-def> |
---|
| 3522 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3523 | <Iteration_hits> |
---|
| 3524 | <Hit> |
---|
| 3525 | <Hit_num>1</Hit_num> |
---|
| 3526 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3527 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3528 | <Hit_accession>0</Hit_accession> |
---|
| 3529 | <Hit_len>5528445</Hit_len> |
---|
| 3530 | <Hit_hsps> |
---|
| 3531 | <Hsp> |
---|
| 3532 | <Hsp_num>1</Hsp_num> |
---|
| 3533 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3534 | <Hsp_score>30</Hsp_score> |
---|
| 3535 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3536 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3537 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3538 | <Hsp_hit-from>1037150</Hsp_hit-from> |
---|
| 3539 | <Hsp_hit-to>1037179</Hsp_hit-to> |
---|
| 3540 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3541 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3542 | <Hsp_identity>30</Hsp_identity> |
---|
| 3543 | <Hsp_positive>30</Hsp_positive> |
---|
| 3544 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3545 | <Hsp_qseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_qseq> |
---|
| 3546 | <Hsp_hseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_hseq> |
---|
| 3547 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3548 | </Hsp> |
---|
| 3549 | </Hit_hsps> |
---|
| 3550 | </Hit> |
---|
| 3551 | </Iteration_hits> |
---|
| 3552 | <Iteration_stat> |
---|
| 3553 | <Statistics> |
---|
| 3554 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3555 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3556 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3557 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3558 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3559 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3560 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3561 | </Statistics> |
---|
| 3562 | </Iteration_stat> |
---|
| 3563 | </Iteration> |
---|
| 3564 | <Iteration> |
---|
| 3565 | <Iteration_iter-num>83</Iteration_iter-num> |
---|
| 3566 | <Iteration_query-ID>lcl|83_0</Iteration_query-ID> |
---|
| 3567 | <Iteration_query-def>82_0.500000</Iteration_query-def> |
---|
| 3568 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3569 | <Iteration_hits> |
---|
| 3570 | <Hit> |
---|
| 3571 | <Hit_num>1</Hit_num> |
---|
| 3572 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3573 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3574 | <Hit_accession>0</Hit_accession> |
---|
| 3575 | <Hit_len>5528445</Hit_len> |
---|
| 3576 | <Hit_hsps> |
---|
| 3577 | <Hsp> |
---|
| 3578 | <Hsp_num>1</Hsp_num> |
---|
| 3579 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3580 | <Hsp_score>30</Hsp_score> |
---|
| 3581 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3582 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3583 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3584 | <Hsp_hit-from>1182188</Hsp_hit-from> |
---|
| 3585 | <Hsp_hit-to>1182217</Hsp_hit-to> |
---|
| 3586 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3587 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3588 | <Hsp_identity>30</Hsp_identity> |
---|
| 3589 | <Hsp_positive>30</Hsp_positive> |
---|
| 3590 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3591 | <Hsp_qseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_qseq> |
---|
| 3592 | <Hsp_hseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_hseq> |
---|
| 3593 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3594 | </Hsp> |
---|
| 3595 | </Hit_hsps> |
---|
| 3596 | </Hit> |
---|
| 3597 | </Iteration_hits> |
---|
| 3598 | <Iteration_stat> |
---|
| 3599 | <Statistics> |
---|
| 3600 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3601 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3602 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3603 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3604 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3605 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3606 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3607 | </Statistics> |
---|
| 3608 | </Iteration_stat> |
---|
| 3609 | </Iteration> |
---|
| 3610 | <Iteration> |
---|
| 3611 | <Iteration_iter-num>84</Iteration_iter-num> |
---|
| 3612 | <Iteration_query-ID>lcl|84_0</Iteration_query-ID> |
---|
| 3613 | <Iteration_query-def>83_0.533333</Iteration_query-def> |
---|
| 3614 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3615 | <Iteration_hits> |
---|
| 3616 | <Hit> |
---|
| 3617 | <Hit_num>1</Hit_num> |
---|
| 3618 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3619 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3620 | <Hit_accession>0</Hit_accession> |
---|
| 3621 | <Hit_len>5528445</Hit_len> |
---|
| 3622 | <Hit_hsps> |
---|
| 3623 | <Hsp> |
---|
| 3624 | <Hsp_num>1</Hsp_num> |
---|
| 3625 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3626 | <Hsp_score>30</Hsp_score> |
---|
| 3627 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3628 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3629 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3630 | <Hsp_hit-from>5430210</Hsp_hit-from> |
---|
| 3631 | <Hsp_hit-to>5430239</Hsp_hit-to> |
---|
| 3632 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3633 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3634 | <Hsp_identity>30</Hsp_identity> |
---|
| 3635 | <Hsp_positive>30</Hsp_positive> |
---|
| 3636 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3637 | <Hsp_qseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_qseq> |
---|
| 3638 | <Hsp_hseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_hseq> |
---|
| 3639 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3640 | </Hsp> |
---|
| 3641 | </Hit_hsps> |
---|
| 3642 | </Hit> |
---|
| 3643 | </Iteration_hits> |
---|
| 3644 | <Iteration_stat> |
---|
| 3645 | <Statistics> |
---|
| 3646 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3647 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3648 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3649 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3650 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3651 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3652 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3653 | </Statistics> |
---|
| 3654 | </Iteration_stat> |
---|
| 3655 | </Iteration> |
---|
| 3656 | <Iteration> |
---|
| 3657 | <Iteration_iter-num>85</Iteration_iter-num> |
---|
| 3658 | <Iteration_query-ID>lcl|85_0</Iteration_query-ID> |
---|
| 3659 | <Iteration_query-def>84_0.533333</Iteration_query-def> |
---|
| 3660 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3661 | <Iteration_hits> |
---|
| 3662 | <Hit> |
---|
| 3663 | <Hit_num>1</Hit_num> |
---|
| 3664 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3665 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3666 | <Hit_accession>0</Hit_accession> |
---|
| 3667 | <Hit_len>5528445</Hit_len> |
---|
| 3668 | <Hit_hsps> |
---|
| 3669 | <Hsp> |
---|
| 3670 | <Hsp_num>1</Hsp_num> |
---|
| 3671 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3672 | <Hsp_score>30</Hsp_score> |
---|
| 3673 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3674 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3675 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3676 | <Hsp_hit-from>310995</Hsp_hit-from> |
---|
| 3677 | <Hsp_hit-to>311024</Hsp_hit-to> |
---|
| 3678 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3679 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3680 | <Hsp_identity>30</Hsp_identity> |
---|
| 3681 | <Hsp_positive>30</Hsp_positive> |
---|
| 3682 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3683 | <Hsp_qseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_qseq> |
---|
| 3684 | <Hsp_hseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_hseq> |
---|
| 3685 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3686 | </Hsp> |
---|
| 3687 | </Hit_hsps> |
---|
| 3688 | </Hit> |
---|
| 3689 | </Iteration_hits> |
---|
| 3690 | <Iteration_stat> |
---|
| 3691 | <Statistics> |
---|
| 3692 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3693 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3694 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3695 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3696 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3697 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3698 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3699 | </Statistics> |
---|
| 3700 | </Iteration_stat> |
---|
| 3701 | </Iteration> |
---|
| 3702 | <Iteration> |
---|
| 3703 | <Iteration_iter-num>86</Iteration_iter-num> |
---|
| 3704 | <Iteration_query-ID>lcl|86_0</Iteration_query-ID> |
---|
| 3705 | <Iteration_query-def>85_0.500000</Iteration_query-def> |
---|
| 3706 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3707 | <Iteration_hits> |
---|
| 3708 | <Hit> |
---|
| 3709 | <Hit_num>1</Hit_num> |
---|
| 3710 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3711 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3712 | <Hit_accession>0</Hit_accession> |
---|
| 3713 | <Hit_len>5528445</Hit_len> |
---|
| 3714 | <Hit_hsps> |
---|
| 3715 | <Hsp> |
---|
| 3716 | <Hsp_num>1</Hsp_num> |
---|
| 3717 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3718 | <Hsp_score>30</Hsp_score> |
---|
| 3719 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3720 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3721 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3722 | <Hsp_hit-from>4174173</Hsp_hit-from> |
---|
| 3723 | <Hsp_hit-to>4174202</Hsp_hit-to> |
---|
| 3724 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3725 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3726 | <Hsp_identity>30</Hsp_identity> |
---|
| 3727 | <Hsp_positive>30</Hsp_positive> |
---|
| 3728 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3729 | <Hsp_qseq>AGGAAAGCAAACAACACGACCACCATCAGC</Hsp_qseq> |
---|
| 3730 | <Hsp_hseq>AGGAAAGCAAACAACACGACCACCATCAGC</Hsp_hseq> |
---|
| 3731 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3732 | </Hsp> |
---|
| 3733 | </Hit_hsps> |
---|
| 3734 | </Hit> |
---|
| 3735 | </Iteration_hits> |
---|
| 3736 | <Iteration_stat> |
---|
| 3737 | <Statistics> |
---|
| 3738 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3739 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3740 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3741 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3742 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3743 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3744 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3745 | </Statistics> |
---|
| 3746 | </Iteration_stat> |
---|
| 3747 | </Iteration> |
---|
| 3748 | <Iteration> |
---|
| 3749 | <Iteration_iter-num>87</Iteration_iter-num> |
---|
| 3750 | <Iteration_query-ID>lcl|87_0</Iteration_query-ID> |
---|
| 3751 | <Iteration_query-def>86_0.566667</Iteration_query-def> |
---|
| 3752 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3753 | <Iteration_hits> |
---|
| 3754 | <Hit> |
---|
| 3755 | <Hit_num>1</Hit_num> |
---|
| 3756 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3757 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3758 | <Hit_accession>0</Hit_accession> |
---|
| 3759 | <Hit_len>5528445</Hit_len> |
---|
| 3760 | <Hit_hsps> |
---|
| 3761 | <Hsp> |
---|
| 3762 | <Hsp_num>1</Hsp_num> |
---|
| 3763 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3764 | <Hsp_score>30</Hsp_score> |
---|
| 3765 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3766 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3767 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3768 | <Hsp_hit-from>163690</Hsp_hit-from> |
---|
| 3769 | <Hsp_hit-to>163719</Hsp_hit-to> |
---|
| 3770 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3771 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3772 | <Hsp_identity>30</Hsp_identity> |
---|
| 3773 | <Hsp_positive>30</Hsp_positive> |
---|
| 3774 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3775 | <Hsp_qseq>GGCAACGCAGGCGCATGATTCTGCTTGGAA</Hsp_qseq> |
---|
| 3776 | <Hsp_hseq>GGCAACGCAGGCGCATGATTCTGCTTGGAA</Hsp_hseq> |
---|
| 3777 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3778 | </Hsp> |
---|
| 3779 | </Hit_hsps> |
---|
| 3780 | </Hit> |
---|
| 3781 | </Iteration_hits> |
---|
| 3782 | <Iteration_stat> |
---|
| 3783 | <Statistics> |
---|
| 3784 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3785 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3786 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3787 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3788 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3789 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3790 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3791 | </Statistics> |
---|
| 3792 | </Iteration_stat> |
---|
| 3793 | </Iteration> |
---|
| 3794 | <Iteration> |
---|
| 3795 | <Iteration_iter-num>89</Iteration_iter-num> |
---|
| 3796 | <Iteration_query-ID>lcl|89_0</Iteration_query-ID> |
---|
| 3797 | <Iteration_query-def>88_0.533333</Iteration_query-def> |
---|
| 3798 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3799 | <Iteration_hits> |
---|
| 3800 | <Hit> |
---|
| 3801 | <Hit_num>1</Hit_num> |
---|
| 3802 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3803 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3804 | <Hit_accession>0</Hit_accession> |
---|
| 3805 | <Hit_len>5528445</Hit_len> |
---|
| 3806 | <Hit_hsps> |
---|
| 3807 | <Hsp> |
---|
| 3808 | <Hsp_num>1</Hsp_num> |
---|
| 3809 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3810 | <Hsp_score>30</Hsp_score> |
---|
| 3811 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3812 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3813 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3814 | <Hsp_hit-from>3071785</Hsp_hit-from> |
---|
| 3815 | <Hsp_hit-to>3071814</Hsp_hit-to> |
---|
| 3816 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3817 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3818 | <Hsp_identity>30</Hsp_identity> |
---|
| 3819 | <Hsp_positive>30</Hsp_positive> |
---|
| 3820 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3821 | <Hsp_qseq>CGTACCGGGCTGAAAGTAGAAGAGCGTTTC</Hsp_qseq> |
---|
| 3822 | <Hsp_hseq>CGTACCGGGCTGAAAGTAGAAGAGCGTTTC</Hsp_hseq> |
---|
| 3823 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3824 | </Hsp> |
---|
| 3825 | </Hit_hsps> |
---|
| 3826 | </Hit> |
---|
| 3827 | </Iteration_hits> |
---|
| 3828 | <Iteration_stat> |
---|
| 3829 | <Statistics> |
---|
| 3830 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3831 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3832 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3833 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3834 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3835 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3836 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3837 | </Statistics> |
---|
| 3838 | </Iteration_stat> |
---|
| 3839 | </Iteration> |
---|
| 3840 | <Iteration> |
---|
| 3841 | <Iteration_iter-num>91</Iteration_iter-num> |
---|
| 3842 | <Iteration_query-ID>lcl|91_0</Iteration_query-ID> |
---|
| 3843 | <Iteration_query-def>90_0.466667</Iteration_query-def> |
---|
| 3844 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3845 | <Iteration_hits> |
---|
| 3846 | <Hit> |
---|
| 3847 | <Hit_num>1</Hit_num> |
---|
| 3848 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3849 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3850 | <Hit_accession>0</Hit_accession> |
---|
| 3851 | <Hit_len>5528445</Hit_len> |
---|
| 3852 | <Hit_hsps> |
---|
| 3853 | <Hsp> |
---|
| 3854 | <Hsp_num>1</Hsp_num> |
---|
| 3855 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3856 | <Hsp_score>30</Hsp_score> |
---|
| 3857 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3858 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3859 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3860 | <Hsp_hit-from>692131</Hsp_hit-from> |
---|
| 3861 | <Hsp_hit-to>692160</Hsp_hit-to> |
---|
| 3862 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3863 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3864 | <Hsp_identity>30</Hsp_identity> |
---|
| 3865 | <Hsp_positive>30</Hsp_positive> |
---|
| 3866 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3867 | <Hsp_qseq>ATCACCGTTTCGCTAACCGGTACGTTTAAC</Hsp_qseq> |
---|
| 3868 | <Hsp_hseq>ATCACCGTTTCGCTAACCGGTACGTTTAAC</Hsp_hseq> |
---|
| 3869 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3870 | </Hsp> |
---|
| 3871 | </Hit_hsps> |
---|
| 3872 | </Hit> |
---|
| 3873 | </Iteration_hits> |
---|
| 3874 | <Iteration_stat> |
---|
| 3875 | <Statistics> |
---|
| 3876 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3877 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3878 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3879 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3880 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3881 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3882 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3883 | </Statistics> |
---|
| 3884 | </Iteration_stat> |
---|
| 3885 | </Iteration> |
---|
| 3886 | <Iteration> |
---|
| 3887 | <Iteration_iter-num>92</Iteration_iter-num> |
---|
| 3888 | <Iteration_query-ID>lcl|92_0</Iteration_query-ID> |
---|
| 3889 | <Iteration_query-def>91_0.566667</Iteration_query-def> |
---|
| 3890 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3891 | <Iteration_hits> |
---|
| 3892 | <Hit> |
---|
| 3893 | <Hit_num>1</Hit_num> |
---|
| 3894 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3895 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3896 | <Hit_accession>0</Hit_accession> |
---|
| 3897 | <Hit_len>5528445</Hit_len> |
---|
| 3898 | <Hit_hsps> |
---|
| 3899 | <Hsp> |
---|
| 3900 | <Hsp_num>1</Hsp_num> |
---|
| 3901 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3902 | <Hsp_score>30</Hsp_score> |
---|
| 3903 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3904 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3905 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3906 | <Hsp_hit-from>3307050</Hsp_hit-from> |
---|
| 3907 | <Hsp_hit-to>3307079</Hsp_hit-to> |
---|
| 3908 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3909 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3910 | <Hsp_identity>30</Hsp_identity> |
---|
| 3911 | <Hsp_positive>30</Hsp_positive> |
---|
| 3912 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3913 | <Hsp_qseq>TTCGCCCGGCAAGCTTACCCAACGCTTATC</Hsp_qseq> |
---|
| 3914 | <Hsp_hseq>TTCGCCCGGCAAGCTTACCCAACGCTTATC</Hsp_hseq> |
---|
| 3915 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3916 | </Hsp> |
---|
| 3917 | </Hit_hsps> |
---|
| 3918 | </Hit> |
---|
| 3919 | </Iteration_hits> |
---|
| 3920 | <Iteration_stat> |
---|
| 3921 | <Statistics> |
---|
| 3922 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3923 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3924 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3925 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3926 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3927 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3928 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3929 | </Statistics> |
---|
| 3930 | </Iteration_stat> |
---|
| 3931 | </Iteration> |
---|
| 3932 | <Iteration> |
---|
| 3933 | <Iteration_iter-num>95</Iteration_iter-num> |
---|
| 3934 | <Iteration_query-ID>lcl|95_0</Iteration_query-ID> |
---|
| 3935 | <Iteration_query-def>94_0.466667</Iteration_query-def> |
---|
| 3936 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3937 | <Iteration_hits> |
---|
| 3938 | <Hit> |
---|
| 3939 | <Hit_num>1</Hit_num> |
---|
| 3940 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3941 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3942 | <Hit_accession>0</Hit_accession> |
---|
| 3943 | <Hit_len>5528445</Hit_len> |
---|
| 3944 | <Hit_hsps> |
---|
| 3945 | <Hsp> |
---|
| 3946 | <Hsp_num>1</Hsp_num> |
---|
| 3947 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3948 | <Hsp_score>30</Hsp_score> |
---|
| 3949 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3950 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3951 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3952 | <Hsp_hit-from>1813009</Hsp_hit-from> |
---|
| 3953 | <Hsp_hit-to>1813038</Hsp_hit-to> |
---|
| 3954 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 3955 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 3956 | <Hsp_identity>30</Hsp_identity> |
---|
| 3957 | <Hsp_positive>30</Hsp_positive> |
---|
| 3958 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 3959 | <Hsp_qseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_qseq> |
---|
| 3960 | <Hsp_hseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_hseq> |
---|
| 3961 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 3962 | </Hsp> |
---|
| 3963 | </Hit_hsps> |
---|
| 3964 | </Hit> |
---|
| 3965 | </Iteration_hits> |
---|
| 3966 | <Iteration_stat> |
---|
| 3967 | <Statistics> |
---|
| 3968 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 3969 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 3970 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 3971 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 3972 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 3973 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 3974 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 3975 | </Statistics> |
---|
| 3976 | </Iteration_stat> |
---|
| 3977 | </Iteration> |
---|
| 3978 | <Iteration> |
---|
| 3979 | <Iteration_iter-num>97</Iteration_iter-num> |
---|
| 3980 | <Iteration_query-ID>lcl|97_0</Iteration_query-ID> |
---|
| 3981 | <Iteration_query-def>96_0.533333</Iteration_query-def> |
---|
| 3982 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 3983 | <Iteration_hits> |
---|
| 3984 | <Hit> |
---|
| 3985 | <Hit_num>1</Hit_num> |
---|
| 3986 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 3987 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 3988 | <Hit_accession>0</Hit_accession> |
---|
| 3989 | <Hit_len>5528445</Hit_len> |
---|
| 3990 | <Hit_hsps> |
---|
| 3991 | <Hsp> |
---|
| 3992 | <Hsp_num>1</Hsp_num> |
---|
| 3993 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 3994 | <Hsp_score>30</Hsp_score> |
---|
| 3995 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 3996 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 3997 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 3998 | <Hsp_hit-from>573782</Hsp_hit-from> |
---|
| 3999 | <Hsp_hit-to>573811</Hsp_hit-to> |
---|
| 4000 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 4001 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 4002 | <Hsp_identity>30</Hsp_identity> |
---|
| 4003 | <Hsp_positive>30</Hsp_positive> |
---|
| 4004 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 4005 | <Hsp_qseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_qseq> |
---|
| 4006 | <Hsp_hseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_hseq> |
---|
| 4007 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 4008 | </Hsp> |
---|
| 4009 | </Hit_hsps> |
---|
| 4010 | </Hit> |
---|
| 4011 | </Iteration_hits> |
---|
| 4012 | <Iteration_stat> |
---|
| 4013 | <Statistics> |
---|
| 4014 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 4015 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 4016 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 4017 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 4018 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 4019 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 4020 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 4021 | </Statistics> |
---|
| 4022 | </Iteration_stat> |
---|
| 4023 | </Iteration> |
---|
| 4024 | <Iteration> |
---|
| 4025 | <Iteration_iter-num>98</Iteration_iter-num> |
---|
| 4026 | <Iteration_query-ID>lcl|98_0</Iteration_query-ID> |
---|
| 4027 | <Iteration_query-def>97_0.566667</Iteration_query-def> |
---|
| 4028 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 4029 | <Iteration_hits> |
---|
| 4030 | <Hit> |
---|
| 4031 | <Hit_num>1</Hit_num> |
---|
| 4032 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 4033 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 4034 | <Hit_accession>0</Hit_accession> |
---|
| 4035 | <Hit_len>5528445</Hit_len> |
---|
| 4036 | <Hit_hsps> |
---|
| 4037 | <Hsp> |
---|
| 4038 | <Hsp_num>1</Hsp_num> |
---|
| 4039 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 4040 | <Hsp_score>30</Hsp_score> |
---|
| 4041 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 4042 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 4043 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 4044 | <Hsp_hit-from>3570563</Hsp_hit-from> |
---|
| 4045 | <Hsp_hit-to>3570592</Hsp_hit-to> |
---|
| 4046 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 4047 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 4048 | <Hsp_identity>30</Hsp_identity> |
---|
| 4049 | <Hsp_positive>30</Hsp_positive> |
---|
| 4050 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 4051 | <Hsp_qseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_qseq> |
---|
| 4052 | <Hsp_hseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_hseq> |
---|
| 4053 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 4054 | </Hsp> |
---|
| 4055 | </Hit_hsps> |
---|
| 4056 | </Hit> |
---|
| 4057 | </Iteration_hits> |
---|
| 4058 | <Iteration_stat> |
---|
| 4059 | <Statistics> |
---|
| 4060 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 4061 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 4062 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 4063 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 4064 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 4065 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 4066 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 4067 | </Statistics> |
---|
| 4068 | </Iteration_stat> |
---|
| 4069 | </Iteration> |
---|
| 4070 | <Iteration> |
---|
| 4071 | <Iteration_iter-num>99</Iteration_iter-num> |
---|
| 4072 | <Iteration_query-ID>lcl|99_0</Iteration_query-ID> |
---|
| 4073 | <Iteration_query-def>98_0.366667</Iteration_query-def> |
---|
| 4074 | <Iteration_query-len>30</Iteration_query-len> |
---|
| 4075 | <Iteration_hits> |
---|
| 4076 | <Hit> |
---|
| 4077 | <Hit_num>1</Hit_num> |
---|
| 4078 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
| 4079 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
| 4080 | <Hit_accession>0</Hit_accession> |
---|
| 4081 | <Hit_len>5528445</Hit_len> |
---|
| 4082 | <Hit_hsps> |
---|
| 4083 | <Hsp> |
---|
| 4084 | <Hsp_num>1</Hsp_num> |
---|
| 4085 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
| 4086 | <Hsp_score>30</Hsp_score> |
---|
| 4087 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
| 4088 | <Hsp_query-from>1</Hsp_query-from> |
---|
| 4089 | <Hsp_query-to>30</Hsp_query-to> |
---|
| 4090 | <Hsp_hit-from>4545136</Hsp_hit-from> |
---|
| 4091 | <Hsp_hit-to>4545165</Hsp_hit-to> |
---|
| 4092 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
| 4093 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
| 4094 | <Hsp_identity>30</Hsp_identity> |
---|
| 4095 | <Hsp_positive>30</Hsp_positive> |
---|
| 4096 | <Hsp_align-len>30</Hsp_align-len> |
---|
| 4097 | <Hsp_qseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_qseq> |
---|
| 4098 | <Hsp_hseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_hseq> |
---|
| 4099 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
| 4100 | </Hsp> |
---|
| 4101 | </Hit_hsps> |
---|
| 4102 | </Hit> |
---|
| 4103 | </Iteration_hits> |
---|
| 4104 | <Iteration_stat> |
---|
| 4105 | <Statistics> |
---|
| 4106 | <Statistics_db-num>1</Statistics_db-num> |
---|
| 4107 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
| 4108 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
| 4109 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
| 4110 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
| 4111 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
| 4112 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
| 4113 | </Statistics> |
---|
| 4114 | </Iteration_stat> |
---|
| 4115 | </Iteration> |
---|
| 4116 | </BlastOutput_iterations> |
---|
| 4117 | </BlastOutput> |
---|