root/galaxy-central/run_functional_tests.sh

#!/bin/sh

# A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/
export PATH=/usr/local/bin:$PATH
rm -f run_functional_tests.log 

if [ ! $1 ]; then
        python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html --exclude="^get" functional
elif [ $1 = 'help' ]; then
        echo "'run_functional_tests.sh'                       for testing all the tools in functional directory"
        echo "'run_functional_tests.sh aaa'                   for testing one test case of 'aaa' ('aaa' is the file name with path)"
        echo "'run_functional_tests.sh -id bbb'               for testing one tool with id 'bbb' ('bbb' is the tool id)"
        echo "'run_functional_tests.sh -sid ccc'              for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
        echo "'run_functional_tests.sh -list'                 for listing all the tool ids"
elif [ $1 = '-id' ]; then
        python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$2 --with-nosehtml --html-report-file run_functional_tests.html
elif [ $1 = '-sid' ]; then
        python ./scripts/functional_tests.py --with-nosehtml --html-report-file run_functional_tests.html -v `python tool_list.py $2`
elif [ $1 = '-list' ]; then
        python tool_list.py
        echo "==========================================================================================================================================="
        echo "'run_functional_tests.sh -id bbb'               for testing one tool with id 'bbb' ('bbb' is the tool id)"
        echo "'run_functional_tests.sh -sid ccc'              for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
else
        python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html $1
fi

echo "'run_functional_tests.sh help'                  for help"
echo "Note: galaxy test framework uses tool_conf.xml.sample, not tool_conf.xml"