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tool_menu.mako

リビジョン 2, 18.0 KB (コミッタ: hatakeyama, 15 年前)
import galaxy-central

行番号
1	## Render a tool
2	<%def name="render_tool( tool, section )">
3	%if not tool.hidden:
4	%if section:
5	<div class="toolTitle">
6	%else:
7	<div class="toolTitleNoSection">
8	%endif
9	<%
10	if tool.input_required:
11	link = h.url_for( controller='tool_runner', tool_id=tool.id )
12	else:
13	link = h.url_for( tool.action, ** tool.get_static_param_values( t ) )
14	%>
15	## FIXME: This doesn't look right
16	## %if "[[" in tool.description and "]]" in tool.description:
17	## ${tool.description.replace( '[[', '<a href="link" target="galaxy_main">' % $tool.id ).replace( "]]", "</a>" )
18	%if tool.name:
19	<a id="link-${tool.id}" href="${link}" target=${tool.target} minsizehint="${tool.uihints.get( 'minwidth', -1 )}">${_(tool.name)}</a> ${tool.description}
20	%else:
21	<a id="link-${tool.id}" href="${link}" target=${tool.target} minsizehint="${tool.uihints.get( 'minwidth', -1 )}">${tool.description}</a>
22	%endif
23	</div>
24	%endif
25	</%def>
26
27	## Render a workflow
28	<%def name="render_workflow( key, workflow, section )">
29	%if section:
30	<div class="toolTitle">
31	%else:
32	<div class="toolTitleNoSection">
33	%endif
34	<% encoded_id = key.lstrip( 'workflow_' ) %>
35	<a id="link-${workflow.id}" href="${ h.url_for( controller='workflow', action='run', id=encoded_id, check_user=False )}" target="_parent"}">${_(workflow.name)}</a>
36	</div>
37	</%def>
38
39	## Render a label
40	<%def name="render_label( label )">
41	<div class="toolPanelLabel" id="title_${label.id}">
42	<span>${label.text}</span>
43	</div>
44	</%def>
45
46	<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
47	<html>
48	<head>
49	<title>${_('Galaxy Tools')}</title>
50	<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
51	<link href="${h.url_for('/static/style/base.css')}" rel="stylesheet" type="text/css" />
52	<link href="${h.url_for('/static/style/tool_menu.css')}" rel="stylesheet" type="text/css" />
53
54	##<script type="text/javascript" src="${h.url_for('/static/scripts/jquery.js')}"></script>
55	${h.js( "jquery", "galaxy.base", "json2" )}
56
57	<script type="text/javascript">
58	// Set up GalaxyAsync object.
59	var galaxy_async = new GalaxyAsync(${str(trans.app.config.log_actions).lower()});
60	galaxy_async.set_func_url(galaxy_async.log_user_action, "${h.url_for( controller='user', action='log_user_action_async' )}");
61
62	$(document).ready(function() {
63	// Init showing/hiding of tool sections.
64	$( "div.toolSectionBody" ).hide();
65	$( "div.toolSectionTitle > span" ).wrap( "<a href='#'></a>" )
66	var last_expanded = null;
67	$( "div.toolSectionTitle" ).each( function() {
68	var body = $(this).next( "div.toolSectionBody" );
69	$(this).click( function() {
70	if ( body.is( ":hidden" ) ) {
71	if ( last_expanded ) {
72	last_expanded.slideUp( "fast" );
73	}
74	last_expanded = body;
75	body.slideDown( "fast" );
76	}
77	else {
78	body.slideUp( "fast" );
79	last_expanded = null;
80	}
81	return false;
82	});
83	});
84
85	// Log clicks on tools.
86	$("div.toolTitle > a").click( function()
87	{
88	var tool_title = $(this).attr('id').split("-")[1];
89	var section_title = $(this).parents("div.toolSectionWrapper").find("div.toolSectionTitle").text().trim();
90	var search_active = $(this).parents("div.toolTitle").hasClass("search_match");
91
92	// Log action.
93	galaxy_async.log_user_action("tool_menu_click." + tool_title, section_title,
94	JSON.stringify({"search_active" : search_active}));
95	});
96
97	$( "a[minsizehint]" ).click( function() {
98	if ( parent.handle_minwidth_hint ) {
99	parent.handle_minwidth_hint( $(this).attr( "minsizehint" ) );
100	}
101	});
102
103	// Init searching.
104	$("#tool-search-query").click( function (){
105	$(this).focus();
106	$(this).select();
107	})
108	.keyup( function () {
109	// Remove italics.
110	$(this).css("font-style", "normal");
111
112	// Don't update if same value as last time
113	if ( this.value.length < 3 ) {
114	reset_tool_search(false);
115	} else if ( this.value != this.lastValue ) {
116	// Add class to denote that searching is active.
117	$(this).addClass("search_active");
118	// input.addClass(config.loadingClass);
119	// Add '*' to facilitate partial matching.
120	var q = this.value + '*';
121	// Stop previous ajax-request
122	if (this.timer) {
123	clearTimeout(this.timer);
124	}
125	// Start a new ajax-request in X ms
126	$("#search-spinner").show();
127	this.timer = setTimeout(function () {
128	$.get("${h.url_for( controller='root', action='tool_search' )}", { query: q }, function (data) {
129	// input.removeClass(config.loadingClass);
130	// Show live-search if results and search-term aren't empty
131	$("#search-no-results").hide();
132	// Hide all tool sections.
133	$(".toolSectionWrapper").hide();
134	// This hides all tools but not workflows link (which is in a .toolTitle div).
135	$(".toolSectionWrapper").find(".toolTitle").hide();
136	if ( data.length != 0 ) {
137	// Map tool ids to element ids and join them.
138	var s = $.map( data, function( n, i ) { return "#link-" + n; } ).join( ", " );
139
140	// First pass to show matching tools and their parents.
141	$(s).each( function() {
142	// Add class to denote match.
143	$(this).parent().addClass("search_match");
144	if ($(this).parents("#recently_used_wrapper").length == 0)
145	// Default behavior.
146	$(this).parent().show().parent().parent().show().parent().show();
147	else if ($(this).parents(".user_pref_visible").length != 0)
148	// RU menu is visible, so filter it as normal.
149	$(this).parent().show().parent().parent().show().parent().show();
150	else
151	{
152	// RU menu is not visible, so set up classes and visibility so that if menu shown matching is
153	// aleady in place.
154	$(this).parent().show();
155	}
156	});
157
158	// Hide labels that have no visible children.
159	$(".toolPanelLabel").each( function() {
160	var this_label = $(this);
161	var next = this_label.next();
162	var no_visible_tools = true;
163	// Look through tools following label and, if none are visible, hide label.
164	while (next.length != 0 && next.hasClass("toolTitle"))
165	{
166	if (next.is(":visible"))
167	{
168	no_visible_tools = false;
169	break;
170	}
171	else
172	next = next.next();
173	}
174	if (no_visible_tools)
175	this_label.hide();
176	});
177	} else {
178	$("#search-no-results").show();
179	}
180	$("#search-spinner").hide();
181	}, "json" );
182	}, 200 );
183	}
184	this.lastValue = this.value;
185	});
186	});
187
188	// Update recently used tools menu. Function inserts a new item and removes the last item.
189	function update_recently_used()
190	{
191	$.ajax({
192	url: "${h.url_for( controller='/user', action='get_most_recently_used_tool_async' )}",
193	dataType: 'json',
194	error: function() {
195	// console.log( "Failed to update recently used list." );
196	},
197	success: function(new_tool_info) {
198	var recently_used_elts = $("#recently_used").find(".toolTitle");
199	var first_elt = $(recently_used_elts.first());
200	var found_in_list = false;
201
202	// Look for new tool in current list. If found, rearrange list to move tool to top.
203	recently_used_elts.each( function(index) {
204	var anchor = $(this).find("a");
205	var tool_id = anchor.attr("id").split("-")[1];
206	if (tool_id == new_tool_info.id)
207	{
208	found_in_list = true;
209
210	// If tool is first, do nothing.
211	if (index == 0)
212	return;
213	else
214	{
215	// Tool not first; reorder.
216	$(this).remove();
217	first_elt.before($(this));
218	}
219	}
220	});
221
222	// If tool not in list, create new element, remove last element, and put new element first in list.
223	if (!found_in_list)
224	{
225	new_tool_elt = $("<div class='toolTitle'> \
226	<a id='link-" + new_tool_info.id + "' href='" + new_tool_info.link + "' target='" +
227	new_tool_info.target + "' minsizehint='" + new_tool_info.minsizehint + "'>" +
228	new_tool_info.name + "</a> " + new_tool_info.description + " \
229	</div>");
230	recently_used_elts.last().remove();
231	recently_used_elts.first().before(new_tool_elt);
232	}
233	}
234	});
235	}
236	</script>
237	</head>
238
239	<body class="toolMenuPage">
240	<div class="toolMenu">
241
242	## Tool search.
243	<%
244	show_tool_search = False
245	if trans.user:
246	show_tool_search = trans.user.preferences.get( "show_tool_search", "False" )
247
248	if show_tool_search == "True":
249	display = "block"
250	else:
251	display = "none"
252	%>
253	<div id="tool-search" style="padding-bottom: 5px; position: relative; display: ${display}; width: 100%">
254	<input type="text" name="query" value="search tools" id="tool-search-query" style="width: 100%; font-style:italic; font-size: inherit"/>
255	<img src="${h.url_for('/static/images/loading_small_white_bg.gif')}" id="search-spinner" style="display: none; position: absolute; right: 0; top: 5px;"/>
256	</div>
257
258	## Recently used tools.
259	%if trans.user:
260	<%
261	if trans.user.preferences.get( 'show_recently_used_menu', 'False' ) == 'True':
262	display = "block"
263	pref_class = "user_pref_visible"
264	else:
265	display = "none"
266	pref_class = "user_pref_hidden"
267	%>
268	<div class="toolSectionWrapper ${pref_class}" id="recently_used_wrapper"
269	style="display: ${display}; padding-bottom: 5px">
270	<div class="toolSectionTitle">
271	<span>Recently Used</span>
272	</div>
273	<div id="recently_used" class="toolSectionBody">
274	<div class="toolSectionBg">
275	%for tool in recent_tools:
276	${render_tool( tool, True )}
277	%endfor
278	</div>
279	</div>
280	<div class="toolSectionPad"></div>
281	</div>
282	%endif
283
284	## Tools.
285	%for key, val in toolbox.tool_panel.items():
286	<div class="toolSectionWrapper">
287	%if key.startswith( 'tool' ):
288	${render_tool( val, False )}
289	%elif key.startswith( 'workflow' ):
290	${render_workflow( key, val, False )}
291	%elif key.startswith( 'section' ):
292	<% section = val %>
293	<div class="toolSectionTitle" id="title_${section.id}">
294	<span>${section.name}</span>
295	</div>
296	<div id="${section.id}" class="toolSectionBody">
297	<div class="toolSectionBg">
298	%for section_key, section_val in section.elems.items():
299	%if section_key.startswith( 'tool' ):
300	${render_tool( section_val, True )}
301	%elif section_key.startswith( 'workflow' ):
302	${render_workflow( section_key, section_val, True )}
303	%elif section_key.startswith( 'label' ):
304	${render_label( section_val )}
305	%endif
306	%endfor
307	</div>
308	</div>
309	%elif key.startswith( 'label' ):
310	${render_label( val )}
311	%endif
312	<div class="toolSectionPad"></div>
313	</div>
314	%endfor
315
316	## Feedback when search returns no results.
317	<div id="search-no-results" style="display: none; padding-top: 5px">
318	<em><strong>Search did not match any tools.</strong></em>
319	</div>
320
321	## Link to workflow management. The location of this may change, but eventually
322	## at least some workflows will appear here (the user should be able to
323	## configure which of their stored workflows appear in the tools menu).
324
325	%if t.user:
326	<div class="toolSectionPad"></div>
327	<div class="toolSectionPad"></div>
328	<div class="toolSectionTitle" id="title_XXinternalXXworkflow">
329	<span>Workflows</span>
330	</div>
331	<div id="XXinternalXXworkflow" class="toolSectionBody">
332	<div class="toolSectionBg">
333	%if t.user.stored_workflow_menu_entries:
334	%for m in t.user.stored_workflow_menu_entries:
335	<div class="toolTitle">
336	<a href="${h.url_for( controller='workflow', action='run', id=trans.security.encode_id(m.stored_workflow_id) )}" target="galaxy_main">${m.stored_workflow.name}</a>
337	</div>
338	%endfor
339	%endif
340	<div class="toolTitle">
341	<a href="${h.url_for( controller='workflow', action='list_for_run')}" target="galaxy_main">All workflows</a>
342	</div>
343	</div>
344	</div>
345	%endif
346
347	</div>
348	</div>
349	</body>
350	</html>

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