1 | ## |
---|
2 | ## Generate the content block for a myExperiment request. |
---|
3 | ## |
---|
4 | <%! |
---|
5 | from xml.sax.saxutils import escape |
---|
6 | import textwrap, base64 |
---|
7 | %> |
---|
8 | <galaxy_json> |
---|
9 | ${workflow_dict_packed} |
---|
10 | </galaxy_json> |
---|
11 | <steps> |
---|
12 | %for step_num, step in workflow_steps.items(): |
---|
13 | <step> |
---|
14 | <id>${step_num}</id> |
---|
15 | <name>${step['name']}</name> |
---|
16 | <tool>${step['tool_id']}</tool> |
---|
17 | <description>${escape( step['annotation'] )}</description> |
---|
18 | <inputs> |
---|
19 | %for input in step['inputs']: |
---|
20 | <input> |
---|
21 | <name>${escape( input['name'] )}</name> |
---|
22 | <description>${escape( input['description'] )}</description> |
---|
23 | </input> |
---|
24 | %endfor |
---|
25 | </inputs> |
---|
26 | <outputs> |
---|
27 | %for output in step['outputs']: |
---|
28 | <output> |
---|
29 | <name>${escape( output['name'] )}</name> |
---|
30 | <type>${output['type']}</type> |
---|
31 | </output> |
---|
32 | %endfor |
---|
33 | </outputs> |
---|
34 | </step> |
---|
35 | %endfor |
---|
36 | </steps> |
---|
37 | <connections> |
---|
38 | %for step_num, step in workflow_steps.items(): |
---|
39 | %for input_name, input_connection in step['input_connections'].items(): |
---|
40 | <connection> |
---|
41 | <source_id>${input_connection['id']}</source_id> |
---|
42 | <source_output>${input_connection['output_name']}</source_output> |
---|
43 | <sink_id>${step_num}</sink_id> |
---|
44 | <sink_input>${input_name}</sink_input> |
---|
45 | </connection> |
---|
46 | %endfor |
---|
47 | %endfor |
---|
48 | </connections> |
---|