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interval2maf_3from28way.maf

リビジョン 2, 96.6 KB (コミッタ: hatakeyama, 14 年前)
import galaxy-central

行番号
1	##maf version=1
2	a score=378218.0
3	s hg18.chr1 99287304 223 - 247249719 TCCTCTATGCAAGAGTACACTAGCTATTCTGTGGACAGGAGCCAGACAATGTGAGCTGTACATAAGAATTATTTTTGCAGTGTCAAAAGCCATTCTAGGTGGAATCCAAATCACCACTTGCCTTAGACAGACACCCCCTCAGCTTCACTGCAGGTCCAGAGTCAGCCGAGGCCAGAGAGAGAACCACCAGGAGTGGAAGCAACACTCTCTAGGTTCTCTGCAC
4	s panTro2.chr1 101234886 223 - 229974691 TCCTCTATGCAAGAGTACACTAGCTATTCTATGGACAGGAGCCAGACAATGTGAGCTGTACATAAGAATTATTTTTGCAGTGTCAAAAGCCATTCTAGGTGGAATCCAAATCACCACTTGCCTTAGACAGACACCCCCTCAGCTTCACTGCAGGTCCAGAGTCAGCCGAGGCCACAGAGAGAACCACCAGGAGTGGAAGCAACACTCTCTAGGTTCTCTGCAC
5
6	a score=10640.0
7	s hg18.chr1 99287270 34 - 247249719 GCTGTAAGATGCCATGTATTTTGTGATTCTACAA
8	s panTro2.chr1 101234852 34 - 229974691 GCTGTAAGATGCCATGTATTTTGTGATTCTACAA
9
10	a score=43023.0
11	s hg18.chr1 99287229 41 - 247249719 AGGGCCCAGAGGATCTGGCCATGTTCTCATGGCATCATTGA
12	s panTro2.chr1 101234811 41 - 229974691 AGGGCCCAGAGGATCTGGCCATGTTCTCATGGCATCATTGA
13
14	a score=120618.0
15	s hg18.chr1 99287139 90 - 247249719 TCCTTGAAAGGGAAAGACTCTAAAACTTTTCTCTGAATTATGGCCCTGCCACCCCAGCTGGGTTTTTCTCTCAAAGGGAGACAGTAATGA
16	s panTro2.chr1 101234721 90 - 229974691 TCCTTGAAAGGGAAAGACTCTAAAACTTTTCTCTGAATTACGGCCCTGCCACCCCAGCTGGGTTTTTCTCTCAAAGGGAGACAGTAATGA
17
18	a score=39239.0
19	s hg18.chr1 147984545 50 + 247249719 AGAAAAACTTTAGTGGAAACAACCAGTACTTAAAGACCATTTTATGAGGC
20	s panTro2.chr1 128764240 50 + 229974691 AGAAAAACTTTAGTGGAAACAACCAGTACTTAAAGACCATTTTATGAGGC
21	i panTro2.chr1 C 0 C 0
22
23	a score=93901.0
24	s hg18.chr1 147984595 35 + 247249719 TGTCATTTACGTATTATCTCTTTTGCTGTTTTTGT
25	s panTro2.chr1 128764290 35 + 229974691 TGTCATTTACATATTATCTCTTTTGCTGTTTTTGT
26	i panTro2.chr1 C 0 C 0
27
28	a score=-5867.0
29	s hg18.chr1 99171300 19 - 247249719 CGTGGGGAGAACTGCGCTG
30	s panTro2.chr1 101114588 19 - 229974691 CGGGGGGAGAACTGCGCTG
31
32	a score=-4312.0
33	s hg18.chr1 99171258 42 - 247249719 GGGAAATGACCACCTCGGCCTCGCCGGGGTTCTGCGGACAAA
34	s panTro2.chr1 101114546 42 - 229974691 GGGAAATGACCACCTCGGCCTCGCCGGGGTTCTGCGGGCAAA
35
36	a score=-5717.0
37	s hg18.chr1 99171247 11 - 247249719 CCGGCTAGGGA
38	s panTro2.chr1 101114535 11 - 229974691 CCGGCTAGGGA
39
40	a score=-26975.0
41	s hg18.chr1 99171193 54 - 247249719 GAGCGCCACACGCCCGTGCTTCGCGCCCAAACCGGCCTCACCCGGCGCGGCCAT
42	s panTro2.chr1 101114481 54 - 229974691 GAGCGCCACACGCCCGTGCTTCGCGCCCAAACCGGCCTCACCCGGCGCGGCCAT
43
44	a score=-60785.0
45	s hg18.chr1 99171137 56 - 247249719 ACTAGGGGGACGCTCAGGGCTCGCGGTCCTGAGCGCGGCTGGCCTTTGCGGAAGTG
46	s panTro2.chr1 101114425 56 - 229974691 ACTAGGGGGACGCTCAGGGCTCGCGGTCCTGAGCGCGGCTGGCCTTTGCGGAAGTG
47
48	a score=151634.0
49	s hg18.chr1 148185136 140 + 247249719 acgtctgtaatcccagctactcgtgaggctgatgcaggagaatcacttgaacctgggaagtggaggttgctgtgagccaagattgtgccactgcatttcagcctggctgacagagcaagacttcctctgaaaaaaaaaaa
50	s panTro2.chr1 128947445 139 + 229974691 acgtctgtaatcccagctactcgtgaggctaatgcaggagaatcacttgaacctgggaagtggaggttgctgtgagccaagattgtgccactgcatttcagcctgggtgacagagcaagacttcctctg-gaaaaaaaaa
51	i panTro2.chr1 C 0 C 0
52
53	a score=518150.0
54	s hg18.chr10 80123058 56 - 135374737 ACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTAA
55	s mm8.chr10 74075614 56 + 129959148 TTAGAGTTGTTGAGGGAATTGACGTGCAACCTCACAGTCAATCAACATCTTTGTAA
56	s panTro2.chr10 82310642 56 - 135001995 ACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTAA
57
58	a score=200210.0
59	s hg18.chr10 80122998 60 - 135374737 TGTGCCCTTCAGAAGTAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGA
60	s panTro2.chr10 82310582 60 - 135001995 TGTGCCCTTCGGAAGTAACAAATATGGAAATCACATTTGAACAAAACAAGGAGAATTTGA
61	s mm8.chr10 74075554 60 + 129959148 TTTGCCCTGCAGAGAAAACAGGCATGAAAATCACACATGACCAGAGCCAGGAAACGTTGG
62
63	a score=136193.0
64	s hg18.chr10 80122957 41 - 135374737 AAAAAACTATCTACGCACAAATGTTTCAGAACTTCAAACTA
65	s panTro2.chr10 82310541 41 - 135001995 AAAAAACTATCTACGCACAAATGTTTCAGAACTTCAAACTA
66	s mm8.chr10 74075513 41 + 129959148 AAAAAACTGCCCACCTGCAGATCCCTCAAAACTACACACGT
67
68	a score=1023171.0
69	s hg18.chr10 80122882 75 - 135374737 AAAAGGCATCCTCAGACACGTTAAAAACTTAGCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGA
70	s panTro2.chr10 82310466 75 - 135001995 AAAAGGCATCCTCAGACATGTTAAAAACTTAGCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGA
71	s mm8.chr10 74075438 75 + 129959148 AAAAGGGATCCTCAGACATGTGAAAAACTTGGCAGAGCTCGAGAAATCAGTGTCTAACATGTACAGTCACATAGA
72
73	a score=-29743.0
74	s hg18.chr10 80122851 31 - 135374737 CAGTGTGTAAAACAGACCCTCAGAGAGAACC
75	s panTro2.chr10 82310435 31 - 135001995 CAGTGTGTAAAACAGACCCTCAGAGAGAACC
76	s mm8.chr10 74075407 31 + 129959148 CGCAGTGGGGGGCAGAACCCCACAGACATCC
77
78	a score=121521.0
79	s hg18.chr10 80122808 43 - 135374737 GCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA
80	s panTro2.chr10 82310392 43 - 135001995 GCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA
81	s mm8.chr10 74075364 40 + 129959148 GCCAGAGAAACCA---CGTCTACGACACAGCCACCAGCATCCA
82
83	a score=101339.0
84	s hg18.chr10 80122748 60 - 135374737 TTTCTGTCCACAGAGTGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCT
85	s panTro2.chr10 82310332 60 - 135001995 TTTCTGTCCACAGAGTGTGTCTGTATAACAGGTGTTGAATGCACGACCAACATGATGCCT
86	s mm8.chr10 74075304 60 + 129959148 ATTCCATCCACAGACAGCATCTCTGCACCAGCTGCTAAATGCACTGCCAGTGCCACACAC
87
88	a score=153575.0
89	s hg18.chr10 80122616 132 - 135374737 cctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCCAACA------------ccacctcttctacctccatttccaactcctcttcctccaccacctccttctattccttgccctccacctccttcAGCTTCA
90	s panTro2.chr10 82310207 125 - 135001995 -------ctACATTTTTTCCACTTTCCATTTCAACGTCTGGTCCCCCAACA------------ccacctcttctacctccatttccaactcctcttcctccaccacctccttctattccttgccctccacctccttcAGCTTCA
91	s mm8.chr10 74075167 137 + 129959148 ----ccccacaacttgttacattttctcttcccatttctacaccccctacttcttctctacctcttcctcctccactgtcacttcctcctc---ctcctcGGCCACCAGCTCCCCGCCTCTTCCCACAGCCTCCTTCCACGTCC
92
93	a score=-80842.0
94	s hg18.chr10 80122576 40 - 135374737 ttgtcctcctccctctcctccttctatccctcttcctctt
95	s panTro2.chr10 82310184 23 - 135001995 ttgtcctcctccctctcctcctt-----------------
96	s mm8.chr10 74075144 23 + 129959148 cctttctccccctaaccctcctc-----------------
97
98	a score=15475.0
99	s hg18.chr10 80122507 69 - 135374737 tcctccttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctcctttttctctttt
100	s mm8.chr10 74075096 48 + 129959148 tccgcctcttcctagacct---------------------cccattgcctttaccacttttcctcttcc
101	s panTro2.chr10 82310115 69 - 135001995 tcctccttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctcctttttctctttt
102
103	a score=-32513.0
104	s hg18.chr10 80122465 42 - 135374737 CTCTCCTTCTGCCTGtccccttccccctcctcctcctatttc
105	s mm8.chr10 74075078 18 + 129959148 CTC------------------------TGctcccctcccaca
106	s panTro2.chr10 82310073 42 - 135001995 CTCTCCTTCTGCCTGtccccttcctcctccttctcctatttc
107
108	a score=286554.0
109	s hg18.chr10 80122411 54 - 135374737 ACCTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAACAT
110	s panTro2.chr10 82310019 54 - 135001995 ACCTGTTGAAACCGAAAGAAATATGTTTGAAAATTTTGCCCATCCACCAAACAT
111	s mm8.chr10 74075024 54 + 129959148 AGATACAGAACCAAAAAGGAACTCTTTTGAGATCGCTCCCCATCCACCTAGCAT
112
113	a score=1014462.0
114	s hg18.chr10 80122238 173 - 135374737 CCCAGGCCTCACTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTCATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTT
115	s mm8.chr10 74074848 176 + 129959148 TCTTGGTCTCACTTTTCTTTCTCAACTCTGCCAACGATTTCCAGAGCGGTGGAACTCGGGTCGGAACCTAATGTGGTCACTTCTCCCGCTGACTGCACCTTGGAACTTTCTCCTCCTCTGAGACCCCGTATTTTAAACTCCTTAAGCTCTAAGAGAGAGACTCCCACATGTGCATC
116	s panTro2.chr10 82309846 173 - 135001995 CCCAGGCCTCACTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTCATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTAAATTCTTCACTCTCTAGGAGAGCGACACCTATTTGTATGTT
117
118	a score=337224.0
119	s hg18.chr10 80122083 155 - 135374737 GAATCTGTACAAACAAAAGAGGTAGCAGCAATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATAAGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCTCTCTTCAGACTCTTCATTTTGCTTT
120	s panTro2.chr10 82309691 155 - 135001995 GAATCTGTACAAACAAAAGAGGTAGCAGCAATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATAAGGCAAGGTGACACACTGATTATGAAAGGAAGAGAACAGTTGAAATCTCTCTCTTCAGACTCTTCATTTTGCTTT
121	s mm8.chr10 74074696 152 + 129959148 GATGCCACCCAAGCCAGAGAGGTAGCAGCAACGTTCTGCTGGCAACTGAAGATGCCCACGAGTCAGAGAA---AGAAGGGGGACACAGAGACACCCTAATCGTCCAGCAAACAGAGCAGCTGAAATCTCTGTCTTCTGGCTCTTCTTTTTCCTCC
122
123	a score=196272.0
124	s hg18.chr10 80122035 48 - 135374737 TGCAGCAGTGGCAAGGCACCAGGCAGAAAGCTGAAAATGAAAACACTG
125	s panTro2.chr10 82309643 48 - 135001995 TGCAGCAGTGGCAAGGCACCAGGCAGAAAGCTGAAAATGAAAACACTG
126	s mm8.chr10 74074648 48 + 129959148 TGGTGGAGTGGCAGATCACCAATCAGAGAGCTGAATGCGAAAGCGCCA
127
128	a score=267386.0
129	s hg18.chr10 80121994 41 - 135374737 GCTGATGAGGAAAGTTCCAAATAGACCAGAGATCATAGATC
130	s panTro2.chr10 82309602 41 - 135001995 GCTGATGAGGAAAGTTCCAAATAGACCAGAGATCATAGATC
131	s mm8.chr10 74074607 41 + 129959148 GCTCATGTGGAAAGCCCCAAACAGGCCAGAGACCATAGACC
132
133	a score=799420.0
134	s hg18.chr10 80121885 109 - 135374737 ATTTTGTAGACCCATTTTCACCCAAAATACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGCTGTGGAGTCAGTCAGTCAGCTTACCCAGGAG
135	s panTro2.chr10 82309493 109 - 135001995 ATTTTGTAGACCTATTTTCACCCAAAGTACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGCTGTGGAGTCAGTCAGTCAGCTTACCCAGGAG
136	s mm8.chr10 74074498 109 + 129959148 ATTTTGAAGAGCTGTTGGCACCCAGAACACAAGTTAAGAGTCAGTCTCTGAGGGGCCCAAGAGAAAAGATCCAGAGGGTGTGGAATCAGTCTGTGAGCTTTCCTAGGCG
137
138	a score=212883.0
139	s hg18.chr10 80121842 43 - 135374737 ATAAGTCAAGTATCAACAAATTCAGACATTTCACAGAGAACAG
140	s panTro2.chr10 82309450 43 - 135001995 ATAAGTCAAGTATCAACAAATTCAGACATTTCACAGAGAACAG
141	s mm8.chr10 74074455 43 + 129959148 ATAGGTCAAAGGTCAACAAACTCAGACCTTCAGCCACGAACAG
142
143	a score=804771.0
144	s hg18.chr10 80121755 87 - 135374737 AGCAACAAACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAAC
145	s panTro2.chr10 82309363 87 - 135001995 AGCAACAAACTGAAGGCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAAC
146	s mm8.chr10 74074368 87 + 129959148 GAGAGCCAGCCTAACCCAGCAAGGACGTTCTCATTTGTTCCTGATGAGGATAACTTAAGTACCCATAATCCCCTTTACATGGAAAGT
147
148	a score=2273365.0
149	s hg18.chr10 80121613 142 - 135374737 TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAG
150	s panTro2.chr10 82309221 142 - 135001995 TATTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAG
151	s mm8.chr10 74074226 142 + 129959148 TCTTTTCCTTCTCTACCATTTTGAACAAAGCAGGGGAAATAACTCAGTCCCAGAAGACAGGAGCAGTCATCGCGATGGGATGGCCTTTTCCTCCAGTACCACTGAGTCTCATGAGCCAGCTCATGTAGAGGGACCACTTAAG
152
153	a score=591281.0
154	s hg18.chr11 18327947 30 - 134452384 GCCTACAAATGGAGTGTTGAGGATATGTAA
155	s mm8.chr9 46049473 30 + 124000669 GCCTACAAGTGGAGTGTGGAGGATATGTGA
156	s panTro2.chr11 18640018 30 - 134204764 GCCTACAAATGGAGTGTTGAGGATATGTAA
157
158	a score=887677.0
159	s hg18.chr11 18327884 63 - 134452384 TCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTT
160	s panTro2.chr11 18639955 63 - 134204764 TCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTT
161	s mm8.chr9 46049410 63 + 124000669 TCCAATGGCTTTGAACAGAAGCGCTTTGCCAGGCTCGCCAGCAAGAAGGCTGTGGAGGAGCTT
162
163	a score=63327.0
164	s hg18.chr11 18327883 1 - 134452384 A
165	s panTro2.chr11 18639954 1 - 134204764 A
166	s mm8.chr9 46049409 1 + 124000669 A
167
168	a score=156152.0
169	s hg18.chr11 116206508 6 + 134452384 ATGCAG
170	s mm8.chr9 78014961 6 - 124000669 ATGCAG
171	i mm8.chr9 C 0 C 0
172	s panTro2.chr11 115648111 6 + 134204764 ATGCAG
173	i panTro2.chr11 C 0 C 0
174
175	a score=204572.0
176	s hg18.chr11 116206514 49 + 134452384 CCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
177	s panTro2.chr11 115648117 49 + 134204764 CCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
178	i panTro2.chr11 C 0 C 0
179	s mm8.chr9 78014967 49 - 124000669 CCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCC
180	i mm8.chr9 C 0 C 0
181
182	a score=27414.0
183	s hg18.chr11 18240627 24 - 134452384 ACTAAGAAGCTCAACACCCAGTGA
184	s panTro2.chr11 18551568 24 - 134204764 ACTAAGAAGCTCAACACCCAGTGA
185	s mm8.chr9 45981373 24 + 124000669 AGCGAGACTCTGACTGCCCAGTGA
186
187	a score=65817.0
188	s hg18.chr11 18240590 37 - 134452384 CTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTAC
189	s panTro2.chr11 18551531 37 - 134204764 CTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTAC
190	s mm8.chr9 45981336 37 + 124000669 GCTTAAGACCCAAGTCCAGAGTGTGATCGACAAGGCC
191
192	a score=121894.0
193	s hg18.chr11 18240544 46 - 134452384 CCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAG
194	s mm8.chr9 45981290 46 + 124000669 CTGCGCTGGAGGACCTGCGCCATAGTCTGATGCCCATGCTGGAGAC
195	s panTro2.chr11 18551485 46 - 134204764 CCGCGCTCGAGGACCTCCGCCAGGGCCTGCTGCCCGTGCTGGAGAG
196
197	a score=368735.0
198	s hg18.chr11 18240366 178 - 134452384 GACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGC
199	s panTro2.chr11 18551307 178 - 134204764 GACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGC
200	s mm8.chr9 45981118 172 + 124000669 GACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAGCGCCCCACAGCGAACAGATGCGCGAGAGCCTGGCCCAGCGCCTGGCTGAGCTCAAGA------GCAACCCTACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGAC
201
202	a score=97575.0
203	s hg18.chr11 18240323 43 - 134452384 CGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGC
204	s panTro2.chr11 18551264 43 - 134204764 CGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGC
205	s mm8.chr9 45981075 43 + 124000669 GGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGAATTTCGC
206
207	a score=580950.0
208	s hg18.chr11 18240123 200 - 134452384 CAGGAGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCA
209	s panTro2.chr11 18551064 200 - 134204764 CAGGAGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCCGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCA
210	s mm8.chr9 45980875 200 + 124000669 CGGGACTTCTGGGATAACCTGGAGAAAGAAACAGATTGGGTGAGACAGGAGATGAACAAGGACCTAGAGGAAGTGAAACAGAAGGTGCAGCCCTACCTGGACGAATTCCAGAAGAAATGGAAAGAGGATGTGGAGCTCTACCGCCAGAAGGTGGCGCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCA
211
212	a score=49052.0
213	s hg18.chr11 18240102 21 - 134452384 GAACAGCTCGGCCCTGTGACC
214	s panTro2.chr11 18551043 21 - 134204764 GAACAGCTCGGCCCTGTGACC
215	s mm8.chr9 45980854 21 + 124000669 GAACGGCTGGGCCCATTGACT
216
217	a score=167437.0
218	s hg18.chr11 18240047 55 - 134452384 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGC
219	s panTro2.chr11 18550988 55 - 134204764 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGC
220	s mm8.chr9 45980799 55 + 124000669 CCTGAATCTCCTGGAAAACTGGGACACTCTGGGTTCAACCGTTAGTCAGCTGCAG
221
222	a score=-14919.0
223	s hg18.chr11 1812377 30 + 134452384 ATGCTCCACCTGCATGGCTGGCAAACCATG
224	s mm8.chr7 142247071 26 + 145134094 ----CCAACTGGACTACCGTGTAGAAGATG
225	i mm8.chr7 C 0 C 0
226	s panTro2.chr11 1858435 30 + 134204764 ATGCTCCACCTGTATGGCTGGCAAACCACG
227	i panTro2.chr11 C 0 C 0
228
229	a score=117382.0
230	s hg18.chr12 93909439 1 - 132349534 A
231	s panTro2.chr12 50116182 1 + 135371336 A
232	s mm8.chr15 12392656 1 - 103492577 A
233
234	a score=2422168.0
235	s hg18.chr12 93909303 136 - 132349534 AAATTGAATCACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAGGGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCTGACAATGATGCTTCTGATGTGGAATA
236	s panTro2.chr12 50116046 136 + 135371336 AAATTGAATCACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAGGGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCTGACAATGATGCTTCTGATGTGGAATA
237	s mm8.chr15 12392520 136 - 103492577 AAATCGAATCGCTCTTTGACCACCGGCTATGTTCATGTGGCGCTGCCGACTCGGATGAAGGGAGGTACATTGAGTACATCCGCGTGAAGGGAAGCAACTATCATCTCTCCGACAACGACGCTTCTGACGTGGAGTA
238
239	a score=1478304.0
240	s hg18.chr12 93909213 90 - 132349534 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATCTATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGG
241	s panTro2.chr12 50115956 90 + 135371336 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCGTCTACGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGG
242	s mm8.chr15 12392430 90 - 103492577 GAGCATTCTTCCTCTACGCCGGATTCGCCGCTGTGGGACTGCTTTTTGTCTATGGCTGCCTCCCTGAAACCAAGGGGAAAAAATTGGAGG
243
244	a score=129525.0
245	s hg18.chr13 112381694 1 + 114142980 A
246	s panTro2.chr13 114131566 1 + 115868456 A
247	i panTro2.chr13 C 0 C 0
248	s mm8.chr8 12748309 1 + 132085098 A
249	i mm8.chr8 C 0 C 0
250
251	a score=39963.0
252	s hg18.chr13 112381695 121 + 114142980 TGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGA
253	s panTro2.chr13 114131567 121 + 115868456 TGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGA
254	i panTro2.chr13 C 0 C 0
255	s mm8.chr8 12748310 91 + 132085098 TTTGTTCACCAGAGT----GTCCTGGCCTCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAAGGACGCA-ATGTAGGG-----CTCCATGGA------------------GGA
256	i mm8.chr8 C 0 C 0
257
258	a score=1055.0
259	s hg18.chr13 112381816 44 + 114142980 GGGAGGCCCCCGTGATGAATCCCGTGATGAGCCGCCGATCCGAG
260	s panTro2.chr13 114131688 44 + 115868456 GGGAGGCCCCTGTGATGAATCCCGTGATGAGCCGCTGATCCGAG
261	i panTro2.chr13 C 0 C 0
262	s mm8.chr8 12748401 15 + 132085098 GGGAGGTCTGTGTGA-----------------------------
263	i mm8.chr8 C 0 C 0
264
265	a score=-16674.0
266	s hg18.chr13 112381860 93 + 114142980 CTCAGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG
267	s panTro2.chr13 114131732 93 + 115868456 CTCGGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG
268	i panTro2.chr13 C 0 C 0
269	s mm8.chr8 12748416 81 + 132085098 -----------CACTGGGACTTGCCACAGGTCAG--TGATTGTTCAGAGGTCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG
270	i mm8.chr8 C 0 C 0
271
272	a score=1627846.0
273	s hg18.chr14 7658261 84 - 106368585 ACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGAGAGGAGCTAA
274	s panTro2.chr14 7807052 84 - 107349158 ACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGAGAGGAGCTAA
275	s mm8.chr12 12099869 84 - 120463159 ACCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGAGCAGGCTGAGAGGAGCTAA
276
277	a score=2813413.0
278	s hg18.chr14 7658104 157 - 106368585 GCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC
279	s panTro2.chr14 7806895 157 - 107349158 GCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC
280	s mm8.chr12 12099712 157 - 120463159 GAGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC
281
282	a score=1778334.0
283	s hg18.chr14 7657988 116 - 106368585 CCGCACCTgggcggcccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCG
284	s panTro2.chr14 7806779 116 - 107349158 CCGCACCTgggcggcccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCG
285	s mm8.chr12 12099596 116 - 120463159 CCTCACCTGGGTGGTCCGGGTCCTGGGAGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACATGTGAGTACTGCGGCAAGGTCTTCAAGAACTGTAGCAACCTGACGGTGCACCG
286
287	a score=448798.0
288	s hg18.chr14 7657957 31 - 106368585 CCGCAGCGGCACGGCCAGCGGAGGCAGCACC
289	s panTro2.chr14 7806748 31 - 107349158 CCGCAGCGGCACGGCCAGCGGGGGCAGCACC
290	s mm8.chr12 12099565 31 - 120463159 GCGCAGTGGCACGGCGAGCGGGGGCAGCACA
291
292	a score=951272.0
293	s hg18.chr14 7657896 61 - 106368585 AGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGG
294	s panTro2.chr14 7806687 61 - 107349158 AGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGG
295	s mm8.chr12 12099504 61 - 120463159 AGAACGGCAGCCTGCGCTTCTCAACGCCACCCGGGGACCTGCTGGACGGCGGGCTGTCCGG
296
297	a score=2903485.0
298	s hg18.chr14 7657646 250 - 106368585 GAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CGCCGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCG
299	s panTro2.chr14 7806437 250 - 107349158 GAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CTCCGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCG
300	s mm8.chr12 12099242 262 - 120463159 GAGCCCTTTCCAGCTCTCTTCCCACGCAAGCCAGCACCGCTGCCCAGCCCTGGGCTCGGTGGTCCCGCGCTGCACGCGGCCAAGCGCATCAAGGTGGAGAAAGACCTGGAGCTGCCACCTGCCGCCCTCATCCCATCTGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCAGCATCGCGCCACTTCATGAAGGACCCATTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACATCGTCGGAACATTCCTCTG
301
302	a score=152242.0
303	s hg18.chr14 7657593 53 - 106368585 cgggcgcgggcggcgcggtcaacgggcgcgggggcggCTTCGCGCCAGGCACC
304	s panTro2.chr14 7806384 53 - 107349158 cgggcgcgggcggcgcggtcaacgggcgcgggggcggCTTCGCGCCAGGCACC
305	s mm8.chr12 12099189 53 - 120463159 CGGGTGCACCGGGTGCAGTGAACGGGCGCGGCGGGGCCTTCGCGCCAGGCGCA
306
307	a score=564664.0
308	s hg18.chr14 7657449 144 - 106368585 AGGTCATGGAGAACGTGGGCCTAGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCGTGCggcgggcggcggggacgcgggc---gacgacgacgacgcgggcggctgcggggacg
309	s panTro2.chr14 7806240 144 - 107349158 AGGTCATGGAGAACGTGGGCCTAGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCGTGCggcgggcggcggggacgcgggc---gacgacgacgacgcgggcggctgcggggacg
310	s mm8.chr12 12099075 114 - 120463159 AGGTGATGGAGGACGCAGGGCTGGGCGCACTGCCGCAGTATGGGGAG------------------AAGCGGGGCGCCTTCCTGAAGCGTGCAGGC---------------GACACGGGTGATGCCGGAGCTGTTGGCTGTGGGGACG
311
312	a score=158337.0
313	s hg18.chr14 7657397 52 - 106368585 gggggcggcgcggccAAGGCGCTGGCTGACGAGAAGGCGCTGGTGCTGGGCA
314	s panTro2.chr14 7806188 52 - 107349158 gggggcggcgcggccAAGGCGCTGGCTGACGAGAAGGCGCTGGTGCTGGGCA
315	s mm8.chr12 12099026 49 - 120463159 GGGGC---TGCAGCTGCGGCTCTGGCGGATGAGAAGGCTCTGGCCCTGGGCA
316
317	a score=706451.0
318	s hg18.chr14 7657293 104 - 106368585 TACTGGAGAACGAGAGCCGGCCCGAGTCGAGCTTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGGGGTgcccggggtcccgggcgcg
319	s panTro2.chr14 7806084 104 - 107349158 TACTGGAGAACGAGAGCCGGCCCGAGTCGAGCTTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGGGGTgcccggggtcccgggcgcg
320	s mm8.chr12 12098922 104 - 120463159 TGCTGGAGAACGAGAGCCGGCCTGAGTCGAGCTTCAGCATGGACTCGGAGCTGGGCCGTGGCCGCGAGAACGGAGGTGGCGTGCCACCGGGGGTGGCGGGCGCA
321
322	a score=424364.0
323	s hg18.chr14 7657246 47 - 106368585 GCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGC
324	s panTro2.chr14 7806037 47 - 107349158 GCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGC
325	s mm8.chr12 12098878 44 - 120463159 GCCTgaggacga---cgaggacgaggaggaggaagaagaggagCTGC
326
327	a score=0.0
328	s hg18.chr14 7657213 33 - 106368585 CCACCACGAGAGCGACCCGTCGCTGGGCCACGA
329
330	a score=1620466.0
331	s hg18.chr14 7657080 133 - 106368585 TGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGTGACTTCCG
332	s panTro2.chr14 7805871 133 - 107349158 TGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGCGACTTCCG
333	s mm8.chr12 12098715 130 - 120463159 TGAAGACGCACATGCACAAGGCGGGCTCTCTGGCTGGCCGCTCAGACGACGGGCTCTCAGCTGCCAGCTCCCCTGAGCCGGGCACCAGCGAGCTGCCAGGTGA---CCTGAAAGCGGCCGATGGCGACTTCCG
334
335	a score=1419683.0
336	s hg18.chr14 7657003 77 - 106368585 TCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACA
337	s panTro2.chr14 7805794 77 - 107349158 TCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACA
338	s mm8.chr12 12098638 77 - 120463159 CCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCATGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACA
339
340	a score=2586302.0
341	s hg18.chr14 7656851 152 - 106368585 AGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCAGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG
342	s panTro2.chr14 7805642 152 - 107349158 AGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCGGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG
343	s mm8.chr12 12098489 149 - 120463159 AGTCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGCCACCCATGCCTGCGGGC---ACACCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG
344
345	a score=2626021.0
346	s hg18.chr14 7656695 156 - 106368585 GACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCTCCTGAACCCCTTCCAGCCC
347	s panTro2.chr14 7805486 156 - 107349158 GACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCTCCTGAACCCCTTCCAGCCC
348	s mm8.chr12 12098333 156 - 120463159 GACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCTGCCATGGACTTCTCCCGGCGGCTGCGAGAACTGGCCGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATGCACCGGCTGCTGAACCCTTTCCAGCCC
349
350	a score=2119797.0
351	s hg18.chr14 7656589 106 - 106368585 GCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCACCACCTGGACCCGCACCGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTC
352	s panTro2.chr14 7805380 106 - 107349158 GCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCACCACCTGGACCCGCACCGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTC
353	s mm8.chr12 12098227 106 - 120463159 GCCAGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCATCACTTGGACCCACACCGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTC
354
355	a score=4942642.0
356	s hg18.chr14 7656300 289 - 106368585 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCACGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCTCACGCCGCGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCCCTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCGGGCTTCGGCGAGGGCCGCCT
357	s panTro2.chr14 7805091 289 - 107349158 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCACGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCTCACGCCGCGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCCCTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCGGGCTTCGGCGAGGGCCGCCT
358	s mm8.chr12 12097938 289 - 120463159 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAGCACGCACAGAACACACATGGCTTCCGAATCTACCTGGAGCCTGGGCCGGCCAGCACCTCGCTCACGCCCAGGCTCACCATCCCGCCACCGCTCGGGCCGGAGACCGTGGCGCAGTCCCCACTCATGAATTTCCTGGGGGACAGCAATCCTTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCTGGCTTCGGTGAGGGCCGCTT
359
360	a score=629708.0
361	s hg18.chr15 58852016 27 - 100338915 TATAAACACGATTATGTTTCTCACTAA
362	s mm8.chr2 61086875 27 - 181976762 TATAAACATGATTATGTTTCTCACTAA
363	s panTro2.chr15 59529448 27 - 100063422 TATAAACACGATTATGTTTCTCACTAA
364
365	a score=373301.0
366	s hg18.chr15 58851981 35 - 100338915 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA
367	s panTro2.chr15 59529413 35 - 100063422 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA
368	s mm8.chr2 61086840 35 - 181976762 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA
369
370	a score=2237520.0
371	s hg18.chr15 58851855 126 - 100338915 ATATTGCTTTAGGGGTATTTGATGTGGTGGTGACGGACCCCTCATGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTG
372	s panTro2.chr15 59529287 126 - 100063422 ATATTGCTTTGGGGGTATTTGATGTGGTGGTGACGGACCCCTCATGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTG
373	s mm8.chr2 61086714 126 - 181976762 ACATTGCTTTAGGGGTATTTGATGTGGTGGTGACAGACCCCTCATGCCCAGCCTCGGTGCTCAAGTGTGCTGAAGCCTTGCAACTGCCTGTGGTATCACAAGAATGGGTGATCCAGTGCCTCATTG
374
375	a score=562984.0
376	s hg18.chr15 41673708 75 + 100338915 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCT
377	s panTro2.chr15 40727968 75 + 100063422 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCT
378	i panTro2.chr15 C 0 C 0
379	s mm8.chr2 121050290 75 + 181976762 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTGGGTCT
380	i mm8.chr2 C 0 C 0
381
382	a score=535926.0
383	s hg18.chr15 41673783 74 + 100338915 CTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGA---GCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAG
384	s panTro2.chr15 40728043 74 + 100063422 CTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGA---GCGGCCAGTGAACGACGGAGGCTGTATCCCCCGAG
385	i panTro2.chr15 C 0 C 0
386	s mm8.chr2 121050365 77 + 181976762 CTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACTGTATCCCCCGAG
387	i mm8.chr2 C 0 C 0
388
389	a score=1893961.0
390	s hg18.chr15 58659665 89 - 100338915 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA
391	s panTro2.chr15 59329615 89 - 100063422 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA
392	s mm8.chr2 60921257 89 - 181976762 GTCGAAACTCAGCCTGGGGTCTCTACGACTGGTTCCAAGCCTCCTGGGCCCTGGCATTGCCCGTCAGCATTTTTGGCCACCTATTATGA
393
394	a score=118616.0
395	s hg18.chr15 41826029 31 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGG
396	s mm8.chr2 121105479 31 + 181976762 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCGG
397	i mm8.chr2 C 0 C 0
398	s panTro2.chr15 40866268 31 + 100063422 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGG
399	i panTro2.chr15 C 0 C 0
400
401	a score=284293.0
402	s hg18.chr15 41826060 57 + 100338915 GTGTGGCGCTGCTTCTTGCCGCGGCCCGCCTCGCCGCTGCCTCCGACGTGCTAGAAC
403	s panTro2.chr15 40866299 57 + 100063422 GTGTGGCGCTGCTTCTTGCCGCGGCCCGCCTCGCCGCTGCCTCCGACGTGCTAGAAC
404	i panTro2.chr15 C 0 C 0
405	s mm8.chr2 121105510 57 + 181976762 GCGTGGCGCTGCTGCTCGCCTCGGCCCGTCTCGCCGCCGCCTCCGATGTGTTGGAAC
406	i mm8.chr2 C 0 C 0
407
408	a score=259946.0
409	s hg18.chr15 41826117 36 + 100338915 TCACGGACGACAACTTCGAGAGTCGCATCTCCGACA
410	s mm8.chr2 121105567 36 + 181976762 TGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACA
411	i mm8.chr2 C 0 C 0
412	s panTro2.chr15 40866356 36 + 100063422 TCACGGACGACAACTTCGAGAGTCGCATCTCCGACA
413	i panTro2.chr15 C 0 C 0
414
415	a score=478199.0
416	s hg18.chr15 41826153 43 + 100338915 CGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
417	s panTro2.chr15 40866392 43 + 100063422 CGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
418	i panTro2.chr15 C 0 C 0
419	s mm8.chr2 121105603 43 + 181976762 CGGGCTCGGCGGGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG
420	i mm8.chr2 C 0 C 0
421
422	a score=71812.0
423	s hg18.chr16 142908 17 + 88827254 ATGTCTCTGACCAAGAC
424	s mm8.chr11 32176663 17 + 121798632 ATGTCTCTGATGAAGAA
425	i mm8.chr11 C 0 C 0
426	s panTro2.chr16 146323 17 + 90682376 ATGTCTCTGACCAAGAC
427	i panTro2.chr16 C 0 C 0
428
429	a score=320391.0
430	s hg18.chr16 142925 78 + 88827254 TGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGGAGAG
431	s mm8.chr11 32176680 78 + 121798632 TGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAGAGAG
432	i mm8.chr11 C 0 C 0
433	s panTro2.chr16 146340 78 + 90682376 TGAGGGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGGAGAG
434	i panTro2.chr16 C 0 C 0
435
436	a score=1751098.0
437	s hg18.chr16 88647174 117 - 88827254 CGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGAAGTGCGAAATACAAGTAA
438	s panTro2.chr16 90501243 117 - 90682376 CGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA
439	s mm8.chr17 26007615 117 + 95177420 CGGAAGTTTTCCCGTTCCAGATCCCGAGATAGATACAGGCGCCATCGCAGCCGTTCCCGGAGCCACAGCCGGGGTCACCGCCGGGCTTCCAGGGACCGGAGTACAAAATACAAGTAA
440
441	a score=362047.0
442	s hg18.chr16 88647119 55 - 88827254 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCGA
443	s panTro2.chr16 90501188 55 - 90682376 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCGA
444	s mm8.chr17 26007560 55 + 95177420 GTCACGCTCCCGGGATCGTCGACGGAGGCGGTCTAGGTCTACCTCCAGAGAGCGG
445
446	a score=119311.0
447	s hg18.chr16 244413 4 + 88827254 ATGT
448	s panTro2.chr16 250030 4 + 90682376 ATGT
449	i panTro2.chr16 C 0 C 0
450	s mm8.chr17 69229272 4 - 95177420 ATGA
451	i mm8.chr17 C 0 C 0
452
453	a score=805217.0
454	s hg18.chr16 244417 122 + 88827254 TGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCATCAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAGTCC
455	s panTro2.chr16 250034 122 + 90682376 TGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCATCAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAGTCC
456	i panTro2.chr16 C 0 C 0
457	s mm8.chr17 69229276 122 - 95177420 TGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACCCAGGAAACCTACCAAGAAACGAAGATAACTTGAAGAGCAAGCCTGTGCCTTCC
458	i mm8.chr17 C 0 C 0
459
460	a score=459982.0
461	s hg18.chr16 244539 41 + 88827254 CGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATT
462	s panTro2.chr16 250156 41 + 90682376 CGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATT
463	i panTro2.chr16 C 0 C 0
464	s mm8.chr17 69229398 41 - 95177420 CGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCT
465	i mm8.chr17 C 0 C 0
466
467	a score=699262.0
468	s hg18.chr16 244580 60 + 88827254 GTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCC
469	s panTro2.chr16 250197 60 + 90682376 GTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCC
470	i panTro2.chr16 C 0 C 0
471	s mm8.chr17 69229439 60 - 95177420 GTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCC
472	i mm8.chr17 C 0 C 0
473
474	a score=263619.0
475	s hg18.chr16 244640 41 + 88827254 GGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG
476	s panTro2.chr16 250257 41 + 90682376 GGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG
477	i panTro2.chr16 C 0 C 0
478	s mm8.chr17 69229499 41 - 95177420 CTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG
479	i mm8.chr17 C 0 C 0
480
481	a score=-184929.0
482	s hg18.chr16 88567958 28 - 88827254 CCCTGGGGGTGGAGATGGGGTGGCCTAG
483	s panTro2.chr16 90415110 23 - 90682376 -----GGGGTGGAGATGGGGTGGCCTAG
484	s mm8.chr17 25938305 28 + 95177420 CCCTGAAGGTGCCGATGGGGAGTAGTAG
485
486	a score=-142475.0
487	s hg18.chr16 88567938 20 - 88827254 GAGCCCACAGCGGCTTGTGG
488	s mm8.chr17 25938285 20 + 95177420 GAGCCTGCAGCAACCAGTTC
489
490	a score=-5251.0
491	s hg18.chr16 88567925 13 - 88827254 TCCCACCCCTGTG
492	s mm8.chr17 25938272 13 + 95177420 GTCTACCCCCAGG
493
494	a score=428688.0
495	s hg18.chr16 88567871 54 - 88827254 CGTGTTCCCGTTTACGTGGAGGCCACGGCACTCGAGCCCCAGCCCTGCACTCCT
496	s panTro2.chr16 90414601 54 - 90682376 CGTGTTCCCAATTACGTGGAGGCCACGGCACTCGAGCCCCAGCCCTGCACTCCT
497	s mm8.chr17 25938218 54 + 95177420 GCCATTTCCATTCTTGCGGAAGCCTCTGCACTCAAGCCCCAGCCCTGCTCTCCA
498
499	a score=1837801.0
500	s hg18.chr18 52330965 74 - 76117153 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA
501	s panTro2.chr18 53421695 74 - 77261746 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA
502	s mm8.chr18 74003599 74 - 90736837 ACTATGACTACCTGAATGACTGGGGACCCCGCTTCAAGAAACTGGCGGACATGTACGGCGGTGGTGACGACTGA
503
504	a score=469497.0
505	s hg18.chr18 52330944 21 - 76117153 CAAGTAGTGGTGGTGAGCAGG
506	s panTro2.chr18 53421674 21 - 77261746 CAAGTAGTGGTGGTGAGCAGG
507	s mm8.chr18 74003578 21 - 90736837 CCAGTAGCGGTGGGGACCAGG
508
509	a score=2266476.0
510	s hg18.chr18 52330832 112 - 76117153 GGCCTTAAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCT
511	s panTro2.chr18 53421562 112 - 77261746 GGCCTTAAAGCGGCTGACAATGACCCGACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCT
512	s mm8.chr18 74003466 112 - 90736837 GGCCTTAAAGCTGCTGACAACGACCCCACGGCGCCACCGTATGACTCCCTCTTAGTCTTTGACTACGAGGGCAGCGGCTCCACGGCTGGCTCCTTGAGCTCCCTCAACTCCT
513
514	a score=1391235.0
515	s hg18.chr18 59406881 165 + 76117153 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGGTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
516	s panTro2.chr18 60102164 165 + 77261746 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGCTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
517	i panTro2.chr18 C 0 C 0
518	s mm8.chr1 108809701 165 + 197069962 ATGGACTCACTAGGCACAGCAGCCACACAGTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAATGATGGCAACGTCTTCTTTTCCCCTGTGGGCATCTCAACAGCCATTGGCATGATCATCCTGGGGACCCGAGGAGCCACTGCTTCTGAGTTACAGAAG
519	i mm8.chr1 C 0 C 0
520
521	a score=725586.0
522	s hg18.chr18 16661111 110 - 76117153 CATCTCCTTCAACTAATGAAGAGTTCTGTTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCATAG
523	s panTro2.chr18 17099295 110 - 77261746 CATCTCCTTCAACTAATGAAGAGTTCCGTTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCGTAG
524	s mm8.chr1 88222178 101 - 197069962 TATCTTTACAGATTACAGAAGATTTCTATTGTGATCATCCATTG---------GTCAAGCACAGTAAGACCAACAGCATCCTCTTCTTTGGCACAATCTCTTCCCCTTAA
525
526	a score=-126872.0
527	s hg18.chr18 16661103 8 - 76117153 CGAATTAT
528	s panTro2.chr18 17099287 8 - 77261746 CGAATTAT
529	s mm8.chr1 88222173 5 - 197069962 TA---ATT
530
531	a score=1725446.0
532	s hg18.chr18 16660844 259 - 76117153 TGATGGAATGGACAAGTTTGCAGAATATGAGAGAGACATGTGTCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAATG---GGGATGCAGACCTCTCAGGCATGACCTGGAGCCACGGTCTCTCAGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGTGGAAGCTGCAGCTGCCACCGCTGTAGTAGTAGT
533	s panTro2.chr18 17099028 259 - 77261746 TGATGGAATGGACAAGTTTGCAGAATATGAGAGAGACACATGTCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAATG---GGGATGCAGACCTCTCAGGCATGACTGGGAGCCGCGGTCTCTCGGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAAGCTGCAGCTGCCACCGCTGTAGTAGTAGT
534	s mm8.chr1 88221911 262 - 197069962 TACTAGAATGGACAAGAGCAGAAAATATGCATATGACCGAGTTGTATTTATCTTTGCCTCGGTTCAAAGTGGAAGAGAAGTATGACCTCTCAGTTCCATTGAAACACATGGGGATGGTTGGCGCCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAACAGCACTCAAGGTCTTGTGGTGTCTAAAGTTTTACACAAGTCCTTTGTGGAGGTAAATGAAGAGGGAACAGAAGCTGCTGCTACCACGGGGATAAAATCCCA
535
536	a score=231361.0
537	s hg18.chr18 16660816 28 - 76117153 CTTGAAGAGAAACTCACTGCTGAGAAAT
538	s panTro2.chr18 17099000 28 - 77261746 CTTGAAGAGAAACTCACTGCTGAGAAAT
539	s mm8.chr1 88221883 28 - 197069962 CTTGAAGAACAACTCTCTACTGAAAAGT
540
541	a score=2290170.0
542	s hg18.chr18 59600586 154 + 76117153 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCCCTCT
543	s panTro2.chr18 60332677 154 + 77261746 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCTCTCT
544	i panTro2.chr18 C 0 C 0
545	s mm8.chr1 109255795 154 + 197069962 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGCCAAGGAAATGGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGACCCTAATCCGTCTGGGTGCTCGAGGTGACTGTGCAC
546	i mm8.chr1 C 0 C 0
547
548	a score=17919.0
549	s hg18.chr18 59600740 14 + 76117153 CTCAGATTGATAAG
550	s panTro2.chr18 60332831 14 + 77261746 CTCAGATTGATAAG
551	i panTro2.chr18 C 0 C 0
552	s mm8.chr1 109255949 14 + 197069962 GTCAGATTGACAAG
553	i mm8.chr1 C 0 C 0
554
555	a score=177042.0
556	s hg18.chr19 59068595 42 + 63811651 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACG
557	s panTro2.chr19 59561975 42 + 64473437 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACG
558	i panTro2.chr19 C 0 C 0
559	s mm8.chr7_random 82256 42 - 243910 ATGCCGGTAACAGTAACTCGTACAACCATCACGACTACAACG
560	i mm8.chr7_random C 0 C 0
561
562	a score=-114935.0
563	s hg18.chr19 59068637 25 + 63811651 ACGTCATCTTCGGGCCTGGGGTCCC
564	s panTro2.chr19 59562017 25 + 64473437 ACGTCATCTTCGGGCCTGGGGTCCC
565	i panTro2.chr19 C 0 C 0
566	s mm8.chr7_random 82298 7 - 243910 TCA------------------TCCT
567	i mm8.chr7_random C 0 C 0
568
569	a score=340234.0
570	s hg18.chr19 59068662 63 + 63811651 CCATGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC
571	s mm8.chr7_random 82305 63 - 243910 CCACCACTGTGGGGTCCGCTCGGGCGCTGACCCAGCCGCTGGGCCTCCTCCGCCTCCTGCAGC
572	i mm8.chr7_random C 0 C 0
573	s panTro2.chr19 59562042 63 + 64473437 CCACGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC
574	i panTro2.chr19 C 0 C 0
575
576	a score=295172.0
577	s hg18.chr19 59068725 23 + 63811651 TGGTGTCTACCTGCGTGGCCTTC
578	s mm8.chr7_random 82368 23 - 243910 TAATATCCACCTGTGTGGCTTTC
579	i mm8.chr7_random C 0 C 0
580	s panTro2.chr19 59562105 23 + 64473437 TGGTGTCTACCTGCGTGGCCTTC
581	i panTro2.chr19 C 0 C 0
582
583	a score=161030.0
584	s hg18.chr19 59068748 38 + 63811651 TCGCTGGTGGCTAGCGTGGGCGCCTGGACGGGGTCCAT
585	s panTro2.chr19 59562128 38 + 64473437 TCGCTGGTGGCTAGCGTGGACGCCTGGACGGGGTCCAT
586	i panTro2.chr19 C 0 C 0
587	s mm8.chr7_random 82391 38 - 243910 TCGCTGGTGGCCAGTGTGGGTGCCTGGACAGGGCCCAT
588	i mm8.chr7_random C 0 C 0
589
590	a score=1769153.0
591	s hg18.chr19 59068786 173 + 63811651 GGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTATGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCA
592	s panTro2.chr19 59562166 173 + 64473437 GGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTACGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCA
593	i panTro2.chr19 C 0 C 0
594	s mm8.chr7_random 82429 173 - 243910 GGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGACTCCAGGCCCACTTCCCCCTGTCATGGCGAAACTTCCCCATCACCTTTGCCTGCTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCA
595	i mm8.chr7_random C 0 C 0
596
597	a score=1066893.0
598	s hg18.chr19 59068959 145 + 63811651 CCACCTATGTCCAGTTCCTGTCCCACGGCCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGC
599	s panTro2.chr19 59562339 145 + 64473437 CCACCTATGTCCAGTTCCTGCCCCACGGTCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGC
600	i panTro2.chr19 C 0 C 0
601	s mm8.chr7_random 82602 145 - 243910 CCACCTATGTGCAGTTCCTAGCTCATGGACGTACCCGGGACCATGCCATCGCTGCCACCACTTTCTCCTGCGTTGCCTGTTTGGCGTATGCCACTGAAGTGGCCTGGACCCGTGCAAGGCCCGGTGAGATCACTGGCTATATGGC
602	i mm8.chr7_random C 0 C 0
603
604	a score=925227.0
605	s hg18.chr19 59069104 98 + 63811651 CACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTTCGCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCC
606	s panTro2.chr19 59562484 98 + 64473437 CACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCC
607	i panTro2.chr19 C 0 C 0
608	s mm8.chr7_random 82747 98 - 243910 TACCGTGCCAGGGCTGCTCAAAGTTTTTGAGACCTTCGTAGCCTGTATCATCTTTGCCTTCATCAGTGAGCCGCTCCTGTATAATCAGAAGCCAGCCC
609	i mm8.chr7_random C 0 C 0
610
611	a score=900583.0
612	s hg18.chr19 59069202 89 + 63811651 TGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTA
613	s panTro2.chr19 59562582 89 + 64473437 TGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTA
614	i panTro2.chr19 C 0 C 0
615	s mm8.chr7_random 82845 89 - 243910 TGGAGTGGTGTGTGGCAGTCTATGCCATCTGCTTCATACTAGCAGGGGTGACCATCCTGCTCAACCTGGGGGATTGTACCAACGTGTTG
616	i mm8.chr7_random C 0 C 0
617
618	a score=962595.0
619	s hg18.chr19 59069291 193 + 63811651 CCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACCGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGG
620	s panTro2.chr19 59562671 193 + 64473437 CCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACTGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGG
621	i panTro2.chr19 C 0 C 0
622	s mm8.chr7_random 82934 205 - 243910 CCCATCCCTTTCCCCACCTTCCTCTCAGGCTTGGCCTTACTCTCTGTTCTCTTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGATATCAGGGCCAACCCCGCCGTTCAATGGATCCAAGCTGCACTCGTAGTATTAGTTATATACAACCCAACACGGTGTGTTTCTGGGACCGACGACTGGCGGTGT
623	i mm8.chr7_random C 0 C 0
624
625	a score=613379.0
626	s hg18.chr19 59069484 80 + 63811651 CCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGGTCTAA
627	s panTro2.chr19 59562864 80 + 64473437 CCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGGTCTAA
628	i panTro2.chr19 C 0 C 0
629	s mm8.chr7_random 83139 80 - 243910 CCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTACTCCACTCGTCTGGTGTTCGTCAAGGTCTGA
630	i mm8.chr7_random C 0 C 0
631
632	a score=200956.0
633	s hg18.chr19 4575513 112 - 63811651 CCCCCAAGGAGTGACCTATGCTGAGCTAAGCACCAGCGCCCTGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCATGAATATGCGGCACTGAAAGTGTAG
634	s panTro2.chr19 4741219 112 - 64473437 CCCCCAAGGAGTGACCTATGCTGAGCTAAGCACCAGCGCCCTGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCGTGAATATGCGGCACTGAAAGTGTAG
635
636	a score=102826.0
637	s hg18.chr19 4575505 8 - 63811651 ACGGCAGA
638	s panTro2.chr19 4741211 8 - 64473437 ACGGCAGA
639
640	a score=177230.0
641	s hg18.chr19 59297998 10 + 63811651 ATGGCTGCGA
642	s panTro2.chr19 59803934 10 + 64473437 ATGGCTGCGA
643	i panTro2.chr19 C 0 N 0
644	s mm8.chr7 3220484 10 + 145134094 ATGGCCGGGA
645	i mm8.chr7 C 0 C 0
646
647	a score=406760.0
648	s hg18.chr19 4509426 57 - 63811651 CGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGACTGA
649	s panTro2.chr19 4667557 57 - 64473437 CGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGACTGA
650	s mm8.chr7 141910596 57 - 145134094 CGAGAGCCAGACAAATTGCTACCCTACCCTACCCTGGCCAGCCCACCCTTTGACTAA
651
652	a score=455500.0
653	s hg18.chr19 4509363 63 - 63811651 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCCTGGATTCCAGTTGGGTTTCT
654	s panTro2.chr19 4667494 63 - 64473437 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCCTGGATTCCAGTTGGGTTTCT
655	s mm8.chr7 141910533 63 - 145134094 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCTTGGATTCAAGTTGGGTTTCC
656
657	a score=-197707.0
658	s hg18.chr2 118288583 6 + 242951149 GTCTCG
659	s mm8.chr1 73674351 6 - 197069962 GAGTCG
660	i mm8.chr1 I 86 C 0
661	s panTro2.chr2b 118424760 6 + 248603653 GTCTCG
662	i panTro2.chr2b I 7 C 0
663
664	a score=207197.0
665	s hg18.chr2 118288589 79 + 242951149 CTTCCACTTCTCCAGGGGGCGCTGCAAAGATTTTGGTCGCCAAAGATATCACGGTGCGCGCGTCTGGAAGCATTTCCGC
666	s panTro2.chr2b 118424766 79 + 248603653 CTTCCACTTCTCCAGGGGGCGCTGCAAAGATTTTGGTCGCCAAAGGTATCACGGTGCGCGCGTCTGGAAGCATTTCCGC
667	i panTro2.chr2b C 0 C 0
668	s mm8.chr1 73674357 77 - 197069962 TCCTCCAGTCGCCAGGGGGCGCTGCAGGAAATTCGGTCTCCAAAGGGAACCCAGCTCTCA--CCAGGAACTGTTTCCGC
669	i mm8.chr1 C 0 C 0
670
671	a score=1362965.0
672	s hg18.chr2 124556947 54 - 242951149 ACA-------GTAAACAC-GTGG----CTTGGATAACACCCATCATCCTATGAAGAATATAGGGAG
673	s panTro2.chr2b 130071925 54 - 248603653 ACA-------GTAAACAC-GTGG----CTTGGATAACACCCATCATCCTATGAAGAATATGGGGAG
674	s mm8.chr1 123328978 54 + 197069962 AGCCCTACAAA---GAACCGTGGGCAGTGTGGATGACACTCAGAGCCC---------CATAGGCAG
675
676	a score=44574.0
677	s hg18.chr2 220190202 12 + 242951149 atggcttaagct
678	s panTro2.chr2b 225564868 12 + 248603653 atggcttaagct
679	i panTro2.chr2b C 0 C 0
680
681	a score=189610.0
682	s hg18.chr2 220190214 28 + 242951149 aattcgaagcaagtatgagccaccaaga
683	s panTro2.chr2b 225564880 28 + 248603653 aattcgaagcaagtatgagccaccaaga
684	i panTro2.chr2b C 0 C 0
685
686	a score=129775.0
687	s hg18.chr2 22721476 64 - 242951149 aagaaactgccaaactgttttccagagtggttgtcccattttacctttccactggtaatgtatg
688	s panTro2.chr2b 22992739 64 - 248603653 aagaaactgccaaactgttttccagagtggttgtcccattttacctttccactggtaatgtatg
689
690	a score=208210.0
691	s hg18.chr2 22721289 187 - 242951149 atcactgcaccattcaccattcacccattaaaggacatctgcattgtctcagtttttggctattgcaaataaaactgctataaacatttgtttagtttattgtgtgaatataagtcttcctttctttgtgataaatgcccaagagtgcaattgctgagtcatatggtagttgtatgtttaggttttt
692	s panTro2.chr2b 22992552 187 - 248603653 atcactgcaccattaaccattcacccattaaaggacatctgcattgtctcagtttttggctattgcaaataaaactgctataaacatttgtttagtttattgtgtgaatataagtcttcctttctttgtgataaatgcccaagagtgcaattgctgcgtcatatggtagttgtatgtttaggttttt
693
694	a score=27396.0
695	s hg18.chr2 22721263 26 - 242951149 ttgtgtgcgtcaaaagcttattcttt
696	s panTro2.chr2b 22992526 26 - 248603653 ttgtttgcgtcaaaagcttattcttt
697
698	a score=336518.0
699	s hg18.chr2 22721013 250 - 242951149 Tagtgtcacaaccaaaatattgacatggacggggcaaaattagagaacatttcaatcacaataatggtcccccaagttgcctttttgtagctgtcccctccctaacctctggaaaccactaacccgttctctatttctgcaacactgtcactgtaagaatattgtataaatggaatcatacattgtgtagccttttgagaatggctttttcaactcagtgctattctctggagatacacagtttactgtg
700	s panTro2.chr2b 22992276 250 - 248603653 Tagtgtcacaaccaaaatattgacatggacggggcaaaattaaagaacatttcaatcacaataatggtcccccaagttgcctttttatagctgtcccctccctaacctctggaaaccactaacccgttctctatttctgcaacactgtcactgtaagaatattgtataaatggaatcatacattgtgtagccttttgagaatggctttttcaactcaatgctattctctggagatacacagtttaccgtg
701
702	a score=86437.0
703	s hg18.chr2 22720918 95 - 242951149 tttgagtgtttagtacctttatttttaatataatgtatttacctgtgtttgaatataatgtatttattttttaattatACATTTTATTTTAAGAT
704	s panTro2.chr2b 22992181 95 - 248603653 tttgagtgtttagtacctttatttttaatataatgtatttacctgtgtttgaatataatgtatttattttttaattatACATTTTATTTTAAGAT
705
706	a score=271443.0
707	s hg18.chr2 22720728 190 - 242951149 tctggtgtaaatactcccacaatggccaatttcaaactattagtgtgacatcactgaatgcagaattgggaagaaatgtgccatagcacatcactatagaatatttccaccatacagatataacagacataaataacttccagaatatagacaatagtaaaagtaacaaaataattgggaagtcatgaat
708	s panTro2.chr2b 22991991 190 - 248603653 tctggtgtaaatactcccacgatggccaatttcaagctattagtgtgacatcactgaatgcagaattgggaagaaatgtgccatagcacatcactatagaatatttccaccatacagatataacagacataaataacttccagaatatagacaatagtaaaagtaacaaaataattgggaagtcatgaat
709
710	a score=197745.0
711	s hg18.chr2 22720624 104 - 242951149 ATGCATGAGAAATTCCCTAAC---TTAAAAGCAgt-----cccggtaaaagtttaacaaccatctacgaaaaaaaggaggggaggacctaatttgtagtgtctgctgatttc
712	s panTro2.chr2b 22991887 104 - 248603653 atgcatgagaaattccctacc---ttaAAAGCAgt-----cccggtaaaagtttaacaaccatctacgaaaaaaaggaggggaggacctaatttgtagtgtctgctgatttc
713	s mm8.chr1 121613757 108 - 197069962 ATGC-TGTGGAA--CCCTCCTAGGTTGCGGACAGTGGAATGCTGGCAGACACAGAGCAGCCTGTTACGGAGAGGAAAGGGACACCATCTGCTT-GCATTGTCTGCTCATTTC
714
715	a score=50206.0
716	s hg18.chr2 22720593 31 - 242951149 TG----GAGTCATCCAGCATCTAAACCCACTTCCT
717	s panTro2.chr2b 22991856 31 - 248603653 TG----GAgtcatccagtatctaaacccacttcct
718	s mm8.chr1 121613722 35 - 197069962 CAGCCAGGGTTGGTCGGTACCTAAATGCACTTCTT
719
720	a score=50867.0
721	s hg18.chr2 22720539 54 - 242951149 ATAACTGATCTGAGACATTAT-CCATTTTTTGATTGACATTTGCTATTTGGGAGG
722	s panTro2.chr2b 22991802 54 - 248603653 ATAACTGATCTGAGACATTAT-CCATTTTTTGATTGACATTTGCTATTTGGGAGG
723	s mm8.chr1 121613670 52 - 197069962 A--A-TGATCTGAGGCCTTTCCCGACTTTTTAGTAAACATTCATTATTTGGGAAG
724
725	a score=357793.0
726	s hg18.chr2 22720367 172 - 242951149 ACC---ATCCTGCCATCTCTATGCTGGATATTAAAGAAATGAGATTATAAACAGCCAG-------GATTCCATTCCTCCA-----GCATCTGCTTCAACCACAGTCCACAACAGCCTTTTATAAAATGAGGGAAGCAATGAGGTAGAGAGGAAATAGCCTTAGGAAGAGCC-AGCTTCTTCCTCCTCT
727	s panTro2.chr2b 22991630 172 - 248603653 ACC---ATCCTGCCATCTCTATGCTGGATATTAAAGAAATGAGATTATAAACAGCCAG-------GATTCCATTCCTCCA-----GCATCTGCTTCAACCACAGTCCACAACAGCCTTTTATAAAATGAGGGAAGCAATGAGGTAGAGAGGAAATAGCCTTAGGAAGAGCC-AGCTTCTTCCTCCTCT
728	s mm8.chr1 121613496 173 - 197069962 ---aCTCTCATCCCATTCCTTTGCCAAAAATTCAAAAGATGAGATTACAAAAGATGAGAGGATGCAGTGCTCCAGACCCATCCTCAATTCCACCTCAACCACAGGCTGCAGGCCCCTTGAATAAAATAA----------AACACAGGGGG--GAAAGCCTGAGGAAGAGCCCAGGTTCTGTCTCCTCT
729
730	a score=3197.0
731	s hg18.chr2 22720323 44 - 242951149 AAAGAGATCTGAGCATTCATAAAACTCCATTTTTTTGTAGTTTT
732	s panTro2.chr2b 22991586 44 - 248603653 AAAGAGATCTGAGCATTCATAAAACTCCATTTTTTTGTAGTTTT
733	s mm8.chr1 121613132 41 - 197069962 --AAACAGCTTAGCATCCATAAGCCTCCATATTTTTGTAGCCT-
734
735	a score=51138.0
736	s hg18.chr2 22720280 43 - 242951149 GAT--GGAGAAAGATTAGAAACAGCAGTGCCTAGGGAA-AAGTGTA
737	s panTro2.chr2b 22991543 43 - 248603653 GAT--GGAGAAAGATTAGAAACGGCAGTGCCTAGGGAA-AAGTGTA
738	s mm8.chr1 121613086 46 - 197069962 AATGGACAGGGGGAATACAAAGGGCATTGACTAAGGGGGAAAGGTC
739
740	a score=1119822.0
741	s hg18.chr20 29105541 10 - 62435964 CCTCACCTGA
742	s panTro2.chr20 29927599 10 - 62293572 CCTCACCTGA
743	s mm8.chr2 26465210 10 - 181976762 CCTCACATGA
744
745	a score=577225.0
746	s hg18.chr20 33513606 69 + 62435964 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAG
747	s mm8.chr2 155653412 66 + 181976762 ATGGAGACAGGGAGCCCCGGGTTG---AACATGAAGCCCCAGTCCTTGCAGCTGGTGCTGGAGGGGCAG
748	i mm8.chr2 C 0 C 0
749	s panTro2.chr20 32554547 69 + 62293572 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAG
750	i panTro2.chr20 C 0 C 0
751
752	a score=1499195.0
753	s hg18.chr20 33513675 117 + 62435964 GTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG
754	s panTro2.chr20 32554616 117 + 62293572 GTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG
755	i panTro2.chr20 C 0 C 0
756	s mm8.chr2 155653478 117 + 181976762 GTGCTGGCGCTGCAGCAGCAGATGGCCGAGAATCAGGCTGCCTCCTGGCGGAAACTGAAGAACTCCCAAGAGGCCCAGAAGAGACAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG
757	i mm8.chr2 C 0 C 0
758
759	a score=366540.0
760	s hg18.chr20 28856457 7 - 62435964 TCCCTAG
761	s panTro2.chr20 29670686 7 - 62293572 TCCCTAG
762	s mm8.chr2 26282855 7 - 181976762 TCCCTAG
763
764	a score=182231.0
765	s hg18.chr20 28856437 20 - 62435964 ATTTTGGAAGATGGTCTGGT
766	s panTro2.chr20 29670666 20 - 62293572 ATTTTGGAAGATGGTCTGGT
767	s mm8.chr2 26282835 20 - 181976762 ATTTTGGAAGATGGTCTGAT
768
769	a score=1173268.0
770	s hg18.chr20 33593260 60 + 62435964 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTC
771	s panTro2.chr20 32635706 60 + 62293572 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTC
772	i panTro2.chr20 C 0 C 0
773	s mm8.chr2 155699581 60 + 181976762 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTC
774	i mm8.chr2 C 0 C 0
775
776	a score=512129.0
777	s hg18.chr20 33593320 28 + 62435964 CGGGTCAAGACCTGCGGGGGCGCCACCG
778	s panTro2.chr20 32635766 28 + 62293572 CGGGTCAAGACCTGCGGGGGCGCCACCG
779	i panTro2.chr20 C 0 C 0
780	s mm8.chr2 155699641 28 + 181976762 CGGGTCAAGACCTGCGGGGGTGCCACGG
781	i mm8.chr2 C 0 C 0
782
783	a score=610562.0
784	s hg18.chr21 32707032 4 + 46944323 ATGC
785	s panTro2.chr21 32160918 4 + 46489110 ATGC
786	i panTro2.chr21 C 0 C 0
787	s mm8.chr16 90720131 4 + 98252459 ATGC
788	i mm8.chr16 I 2 C 0
789
790	a score=749215.0
791	s hg18.chr21 32707036 127 + 46944323 TTCTGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAA
792	s panTro2.chr21 32160922 127 + 46489110 TTCTGCCGGGACCCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAA
793	i panTro2.chr21 C 0 C 0
794	s mm8.chr16 90720135 127 + 98252459 TCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGCAGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAA
795	i mm8.chr16 C 0 C 0
796
797	a score=211993.0
798	s hg18.chr21 32707163 29 + 46944323 AGAGATCTCAGCGCTCACCGACTTCTCTG
799	s panTro2.chr21 32161049 29 + 46489110 AGAGATCTCAGCGCTCACCGACTTCTCTG
800	i panTro2.chr21 C 0 C 0
801	s mm8.chr16 90720262 29 + 98252459 AGAGACCTCCGCGCTCACCGATTTCTCTG
802	i mm8.chr16 C 0 C 0
803
804	a score=98928.0
805	s hg18.chr21 14074369 313 - 46944323 TGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGACGAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTTGGTAAAGAAACGGGGCCTATGTGGTGGCCGAGCCTCAGGTGTGGCCGAGCTTCAGGTGTGGCCCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTGGCCCTTCAGGGCCGAATCTGA
806	s panTro2.chr21 14164701 313 - 46489110 TGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGCCAAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTCGGTAAAGAAACAGAGCCTATCTGGTGGCTGAGCCTCAGGTGTGGCCGAGCTTCAGGTGTGGCCCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTAGCCCTTCAGGGCCGAATCTGA
807
808	a score=108541.0
809	s hg18.chr21 14074301 68 - 46944323 ATGGAGCGCCCTCTCATCTGGCACCTTCCTGGCCTCTTTCCCAGGCCCCAGTTCTGTCCATGCAGCTG
810	s panTro2.chr21 14164633 68 - 46489110 ATGGAGCGCCCTCTCATCTGGCACCTGCCTGGCCTCTTTCCCAAGCCCCAGTTCTGTCCATGCAGCTG
811
812	a score=637432.0
813	s hg18.chr21 33321040 72 + 46944323 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCC
814	s panTro2.chr21 32770081 72 + 46489110 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCC
815	i panTro2.chr21 C 0 C 0
816	s mm8.chr16 91115258 72 + 98252459 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTTTTTCTGCCCGCC
817	i mm8.chr16 C 0 C 0
818
819	a score=158069.0
820	s hg18.chr21 33321112 116 + 46944323 CGGAGTAAGGGCAGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGTGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGG
821	s panTro2.chr21 32770153 116 + 46489110 CGGAGTAAGGGCAGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGCGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGG
822	i panTro2.chr21 C 0 C 0
823	s mm8.chr16 91115330 116 + 98252459 CGGAGCAAGGGGGGAAGCAGCAGCGGCTTCACAGGAGGGACTGTGTCCTCGTCCACGCCGAGCGACTGCCCGCCAGAGCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGG
824	i mm8.chr16 C 0 C 0
825
826	a score=56737.0
827	s hg18.chr21 33321228 102 + 46944323 CGCGCATCCTGGGGACAAGCTAGGAGGCAGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCGTCGGCGGCTGCGTCGTCCACCAAGAAGGA
828	s panTro2.chr21 32770269 102 + 46489110 CGCCCATCCTGGGGACAAGCTAGGAGGCAGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCGTCGGCGGCTGCGTCGTCCACCAAGAAGGA
829	i panTro2.chr21 C 0 C 0
830	s mm8.chr16 91115446 102 + 98252459 CGCGCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCCTCGGCGGCCACGTCTTCCACCAAGAAAGA
831	i mm8.chr16 C 0 C 0
832
833	a score=1401662.0
834	s hg18.chr21 33321330 142 + 46944323 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTCCGCGAGGTCATGCCGTACGCACACGGCCCTTCGGTGCGC
835	s panTro2.chr21 32770371 142 + 46489110 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTGCGCGAGGTCATGCCGTACGCACACGGCCCTTCGGTGCGC
836	i panTro2.chr21 C 0 C 0
837	s mm8.chr16 91115548 142 + 98252459 CAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGGGAGGTCATGCCTTACGCGCACGGGCCGTCGGTGCGC
838	i mm8.chr16 C 0 C 0
839
840	a score=494453.0
841	s hg18.chr21 33321472 43 + 46944323 AAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACA
842	s panTro2.chr21 32770513 43 + 46489110 AAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACA
843	i panTro2.chr21 C 0 C 0
844	s mm8.chr16 91115690 43 + 98252459 AAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACA
845	i mm8.chr16 C 0 C 0
846
847	a score=611248.0
848	s hg18.chr21 33321515 47 + 46944323 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC
849	s panTro2.chr21 32770556 47 + 46489110 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC
850	i panTro2.chr21 C 0 C 0
851	s mm8.chr16 91115733 47 + 98252459 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC
852	i mm8.chr16 C 0 C 0
853
854	a score=167373.0
855	s hg18.chr21 33321562 184 + 46944323 GAGATCTACGGGGGCCACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTCCGCGCCCCTGCCCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACCCCGCGGTGCACCACCCCATCctgccgcccgccgccgcagcggctgctgccgccgctgcagccg
856	s panTro2.chr21 32770603 184 + 46489110 GAGATCTACGGGGGCCACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTCTGCGCCCCTGCCCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACCCCGCGGTGCACCACCCCATCctgccgcctgccgccgcagcggctgctgccgccgctgcagccg
857	i panTro2.chr21 C 0 C 0
858	s mm8.chr16 91115780 184 + 98252459 GAGATCTACGGGGGTCACCACGCCGGCTTCCACCCATCGGCCTGTGGCGGGCTGGCACACTCGGCGCCTCTACCCACCGCCACGGCGCACCCCGCGGCCGCCGCGCACGCCGCGCACCACCCGGCCGTGCACCACCCCATCCTCCCTCccgcagccgccgccgccgccgcagccgccgccgccg
859	i mm8.chr16 C 0 C 0
860
861	a score=235994.0
862	s hg18.chr21 33321746 103 + 46944323 cggctgTGTCCAGCGCCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTgccgcggccgc
863	s mm8.chr16 91115964 103 + 98252459 cAGCGGTGTCCAGCGCCTCTCTACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGC
864	i mm8.chr16 C 0 C 0
865	s panTro2.chr21 32770787 103 + 46489110 cggctgTGTCCAGCGCCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTGCCGCAgccgc
866	i panTro2.chr21 C 0 C 0
867
868	a score=336560.0
869	s hg18.chr21 33321849 74 + 46944323 cccgctggggggcgggggcggcggcAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCCT
870	s panTro2.chr21 32770890 74 + 46489110 cccgctggggggcgggggcggcggcAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCCT
871	i panTro2.chr21 C 0 C 0
872	s mm8.chr16 91116067 74 + 98252459 CCCTCTCGGAGGCGGGGGTGGAGGCAGCGGTGGCAGCGGTGGCTTCCAGCACTGGGGCGGCATGCCGTGCCCCT
873	i mm8.chr16 C 0 C 0
874
875	a score=333126.0
876	s hg18.chr21 33321923 30 + 46944323 GCAGCATGTGCCAGGTGCCGCCGCCGCACC
877	s panTro2.chr21 32770964 30 + 46489110 GCAGCATGTGCCAGGTGCCGCCGCCGCACC
878	i panTro2.chr21 C 0 C 0
879	s mm8.chr16 91116141 30 + 98252459 GCAGCATGTGCCAGGTGCCGCCGCCGCACC
880	i mm8.chr16 C 0 C 0
881
882	a score=245579.0
883	s hg18.chr21 33321953 40 + 46944323 ACCACGTGTCGGCTATGGGCGCCGGCAGCCTGCCGCGCCT
884	s panTro2.chr21 32770994 40 + 46489110 ACCACGTGTCGGCCATGGGCGCCGGCAGCCTGCCGCGCCT
885	i panTro2.chr21 C 0 C 0
886	s mm8.chr16 91116171 40 + 98252459 ACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCT
887	i mm8.chr16 C 0 C 0
888
889	a score=-238175.0
890	s hg18.chr21 33321993 19 + 46944323 CACCTCCGACGCCAAGTGA
891	s panTro2.chr21 32771034 19 + 46489110 CACCTCCGACGCCAAGTGA
892	i panTro2.chr21 C 0 C 0
893	s mm8.chr16 91116211 19 + 98252459 CACCTCCGACGCCAAGTGA
894	i mm8.chr16 C 0 C 0
895
896	a score=157215.0
897	s hg18.chr21 13199327 2 - 46944323 GA
898	s mm8.chr16 6787486 2 - 98252459 GA
899	s panTro2.chr21 13299591 2 - 46489110 GA
900
901	a score=753161.0
902	s hg18.chr21 13199283 44 - 46944323 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCT
903	s panTro2.chr21 13299547 44 - 46489110 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCT
904	s mm8.chr16 6787442 44 - 98252459 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTCTGGGCCT
905
906	a score=254771.0
907	s hg18.chr22 30120223 42 + 49691432 ctcccatgctgtggaagctttgctattttggtcttcgcaatg
908	s panTro2.chr22 30280431 42 + 50165558 ctcccatgctgtggaagctttgttattttgctcttcgcaaag
909	i panTro2.chr22 C 0 C 0
910
911	a score=154402.0
912	s hg18.chr22 19531009 4 - 49691432 CAAT
913	s panTro2.chr22 19843351 4 - 50165558 CAGT
914	s mm8.chr11 3149702 4 + 121798632 CAGT
915
916	a score=61287.0
917	s hg18.chr22 19530974 35 - 49691432 ATCTCCCAAAATAGGTTAGCCTTGCGGGGAGTGAT
918	s panTro2.chr22 19843316 35 - 50165558 ATCTCCCAAAATAGGTTAGCCTTGCGGGGAGTGAT
919
920	a score=74044.0
921	s hg18.chr22 19530840 134 - 49691432 ttactatccccatgttacatgaggaaactgaggctcataaaggttgggtaatttgttcagggctccacagctaactagaggtggacctgcaatttcaaaccctgatctgcctggtcggagtacttaa-ttacATG
922	s panTro2.chr22 19843181 135 - 50165558 ttactatccccatgttacatgaggaaactgaggctcataaaggttgggtaatttgttcagggctccacagctaactagaggtggacctgcaacttcaaaccctgatctgcctgGTCGGAGTACTTAAATTACATG
923
924	a score=81981.0
925	s hg18.chr22 19530787 53 - 49691432 aagtaccatctccctccattactaacaatcaccaccgcagaaagtaagtgcta
926	s panTro2.chr22 19843128 53 - 50165558 aagtaccatctccctccattactaacaatcaccaccgcagaaagtaagtgcta
927
928	a score=-1554.0
929	s hg18.chr22 19530771 16 - 49691432 acagtatttgacatat
930	s panTro2.chr22 19843112 16 - 50165558 acagtatttgacatgt
931
932	a score=90207.0
933	s hg18.chr22 30665273 17 + 49691432 GGCCTACAGTGGGAGAA
934	s panTro2.chr22 30838165 17 + 50165558 GGCCTACAGTGGGAGAA
935	i panTro2.chr22 I 13 C 0
936
937	a score=642220.0
938	s hg18.chr22 30665290 70 + 49691432 AAAGTTAAAATCCTATCTGGGTGACATTATTAATAATTTGTGGACAGGCGGCTGCTCCAGCTCAAGATGG
939	s panTro2.chr22 30838182 70 + 50165558 AAAGTTAAAATCCTATCTGGGTGACATTATTAATAATTTGTGGACAGGCGGCTGCTCCAGCTCAAGATGG
940	i panTro2.chr22 C 0 C 0
941
942	a score=271624.0
943	s hg18.chr22 18752166 212 - 49691432 ctgacaaaggagttgtatccggaataaaaagaccaacaggccaactttaaaactcaaaaaaaaaaatgacaCTTGGAGAAGAGCTTCAAGGTGACTGACtagaggtgcccaacattcgtctcctccacaaagaaggagcaaaacagataatcacatgtcaaatagagcatctaacagagaatgctggaattcagcggggaagtgacagaacc
944	s panTro2.chr22 19062041 173 - 50165558 ctgacaaaggagttgtatctggaataAAAAGACCAACAGGCCAActt---------------------------------------caaggtgactgactagaggtgcccaacattcgtctcctccacaaagaaggagcaaaacagataatcacatgtcaaatagagcatctaacagagaatgctggaattcagcggggaagtgacagaacc
945
946	a score=489900.0
947	s hg18.chr5 131424298 81 + 180857866 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGCCC
948	s panTro2.chr5 133682646 81 + 183994906 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGTCC
949	i panTro2.chr5 C 0 C 0
950	s mm8.chr11 67687980 73 - 121798632 ACCAGCATCCACACCATGCTGCTCCTGCTCCTGATGCTCTTCCACCTGGGACTCCAAGCTTCAATCAGTGGCC------------
951	i mm8.chr11 C 0 I 19
952
953	a score=-86483.0
954	s hg18.chr5 131424379 81 + 180857866 TTGAAGACAAGCTGGGTTAACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG
955	s panTro2.chr5 133682727 81 + 183994906 TTGAAGACAAGCTGGGTTAACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG
956	i panTro2.chr5 C 0 C 0
957	s mm8.chr11 67688072 52 - 121798632 ----CAGAACGTTGA----ATTGCAGCTCTATTGTCAAGGAGATTATAG------GGAAGCTCCCA---------------
958	i mm8.chr11 I 19 C 0
959
960	a score=1522676.0
961	s hg18.chr5 49301194 71 - 180857866 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA
962	s panTro2.chr5 50180989 71 - 183994906 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA
963	s mm8.chr11 53974612 71 + 121798632 TCTCCAACAAGTGGTTCCATGAGCGAGGACAGGAGTTCTTAAGACCTTGTGGAACAACGGAAGTTGATTGA
964
965	a score=291108.0
966	s hg18.chr5 131621326 30 + 180857866 ATGCCCCATTCCGTGACCCTGCGCGGGCCT
967	s panTro2.chr5 133877364 30 + 183994906 ATGCCCCATTCCGTGACCCTGCGCGGGCCT
968	i panTro2.chr5 C 0 C 0
969	s mm8.chr11 67886277 30 - 121798632 ATGACCCACTCGGTGACCCTGCGCGGCCCT
970	i mm8.chr11 C 0 C 0
971
972	a score=990690.0
973	s hg18.chr5 131621356 63 + 180857866 TCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG
974	s panTro2.chr5 133877394 63 + 183994906 TCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG
975	i panTro2.chr5 C 0 C 0
976	s mm8.chr11 67886307 63 - 121798632 TCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGTGCTCCCCTCACCATCTCGCGG
977	i mm8.chr11 C 0 C 0
978
979	a score=519601.0
980	s hg18.chr5 49010271 54 - 180857866 CTGCTGACCCCA---GTCCGGT---TGCCCTCCATCCAGGCCATTCCCTGTGCACCGTAG
981	s panTro2.chr5 49887369 54 - 183994906 CTGCTGACCCCA---GTCCGGT---TGCCCTCCATCCAGGCCATTCCCTGTGCACCGTAG
982	s mm8.chr11 53619809 60 + 121798632 CTGCTGGGCAACTCTGTGAGGCTGCCGCCCTCTATTCAGGCCATTCCTTGTGCACCATAG
983
984	a score=431236.0
985	s hg18.chr5 49010219 52 - 180857866 ACAGCGTGTCTTCACAGATCTGAAGAACATGGATGCCACC---TGGCTGGACAGC
986	s panTro2.chr5 49887317 52 - 183994906 ACAGCGTGTCTTCACAGATCTGAAGAACATGGATGCCACC---TGGCTGGACAGC
987	s mm8.chr11 53619754 55 + 121798632 ACAACATGTCTTCACGGAGATGAAGAATATGGACTCCATCATGTGGATGGACAGC
988
989	a score=274608.0
990	s hg18.chr5 49010200 19 - 180857866 GGGATATTGGGCTGAGTCT
991	s panTro2.chr5 49887298 19 - 183994906 GGGATATTGGGCTGAGTCT
992	s mm8.chr11 53619735 19 + 121798632 GGGACATTGGGATAGGCAT
993
994	a score=3488854.0
995	s hg18.chr6 62600248 144 - 170899992 TTGGAAGTTCATGAGGCTAAGCCTGTGCCAGAAAATCACCCACAGTGGGATACAGCAATAGAGGGGGATGAAGACCAGGAGGACAGTGAGGGCTTTGAAGATAGCTTTGAGGAAGAAGAGGAGGAAGAAGAAGATGATGACTAA
996	s panTro2.chr6 64206236 144 - 173908612 TTGGAAGTTCATGAGGCTAAGCCTGTGCCAGAAAATCACCCACAGTGGGATACAGCAATAGAGGGGGATGAAGACCAGGAGGACAGTGAGGGCTTTGAAGATAGCTTTGAGGAAGAAGAGGAGGAAGAAGATGATGATGACTAA
997	s mm8.chr10 42517305 144 + 129959148 TTGGAAGTTCATGAGGCCAAGCCTGTGCCAGAAAACCACCCACAGTGGGACACAGCGATAGAAGGTGACGAAGACCAGGAAGACAGTGAAGGATTTGAAGACAGCTTTGAGGAAGAGGAGGAGGAAGAGGAAGGTGGAGACTAA
998
999	a score=673541.0
1000	s hg18.chr6 108594662 25 + 170899992 ATGAGCAAGCCAGCCGGATCAACAA
1001	s panTro2.chr6 109997450 25 + 173908612 ATGAGCAAGCCAGCCGGATCAACAA
1002	i panTro2.chr6 C 0 C 0
1003	s mm8.chr10 87687827 25 - 129959148 ATGAGCAAGCCCGCCGGATCAACAA
1004	i mm8.chr10 C 0 C 0
1005
1006	a score=2387325.0
1007	s hg18.chr6 62259841 106 - 170899992 GGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA
1008	s panTro2.chr6 63864488 106 - 173908612 GGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA
1009	s mm8.chr10 42223067 106 + 129959148 GGTCGCTGGTCATCCTCTGGCCCAGAATGAACGTTGTCTTCACATGTTTTTACAGGATGAAATTATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA
1010
1011	a score=684735.0
1012	s hg18.chr6 108722976 80 + 170899992 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGG
1013	s panTro2.chr6 110129713 80 + 173908612 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGG
1014	i panTro2.chr6 C 0 C 0
1015	s mm8.chr10 87792332 80 - 129959148 ATGGCGGCCTCCTGGTCGCCCTTGGTTACTCTGCGCTCCGCCGCGCGCAGCCGGCTGACTGGGAGAGGTGTTGGGTGCGG
1016	i mm8.chr10 C 0 C 0
1017
1018	a score=301881.0
1019	s hg18.chr6 108723056 59 + 170899992 GGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG
1020	s panTro2.chr6 110129793 59 + 173908612 GGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG
1021	i panTro2.chr6 C 0 C 0
1022	s mm8.chr10 87792412 59 - 129959148 GGCGCGGGTCGTCGCAATCCCTCCTCCGGCCCCTGGCCCTGGGAAACCCCTGTGGAAAG
1023	i mm8.chr10 C 0 C 0
1024
1025	a score=77769.0
1026	s hg18.chr7 113660517 150 + 158821424 acaatatttttacatgtacaaaaggagtgtttaggattcctatagtgaaattaaataa--aaatagtatttcatcatttcatctttatcctctgcatttttactcttgtgtatgtcttatacaaaacagagtatataaaatatttaagtata
1027	s panTro2.chr7 114366363 150 + 160261443 acaatatttttacatgtacaaaaggagcatttaggattcctatagtgaaattaaataa--aaatagtatttcatcatttcatctttatcctctgcatttttactgttgtgtatgtcttatacaaaacagagtatataaaatatttaagtata
1028	i panTro2.chr7 C 0 C 0
1029	s mm8.chr6 15003289 119 + 149525685 TCAATA-TTTTGCAAGTTCAAAGG---TATTTTGCATTTATATAGCAAAGTTAAACTATTAA-----------------CATATCTGTACT------------TTTTGTATATGTCTGATATAGGACAGATGATATAAAATATTTAGGTTTA
1030	i mm8.chr6 I 216 C 0
1031
1032	a score=225170.0
1033	s hg18.chr7 113660667 18 + 158821424 gtagcacttgtatataaa
1034	s panTro2.chr7 114366513 18 + 160261443 gtagcacttgtatataaa
1035	i panTro2.chr7 C 0 C 0
1036	s mm8.chr6 15003408 18 + 149525685 GCAGTGCTTTTATATAAA
1037	i mm8.chr6 C 0 C 0
1038
1039	a score=109967.0
1040	s hg18.chr7 42309182 83 - 158821424 AA---ACAGAAAAAATGACAACCTAAAACTGATTTGCTCCTACCGCTTTTGAGAAAAGTAAAAACATAAAATATAATTTTATTCTC
1041	s panTro2.chr7 42970029 83 - 160261443 AA---ACAGAAAAAATGATAACCTAAAACTGATTTGCTCCTACCGCTTTTGAGAAAAGTAAAAACATAAAATATAATTTTATTCTC
1042	s mm8.chr6 131770695 82 - 149525685 CACTGAGGGGGAGGAGGACAACCTGAAATCCATTTGCTCTGATCAGATTTCATGAA----CGGAGATGAAATGTGTTTCTCTCCCA
1043
1044	a score=102283.0
1045	s hg18.chr7 42309126 56 - 158821424 CACAGATAGACATA-CCAAATTACAGAGAACAGGTATCTACTGTTCTAAAAACCTGG
1046	s panTro2.chr7 42969973 56 - 160261443 CACAGATAGACATA-CCAAATTACAGAGAACAGGTATCTACTGTTCTAAAAACCTGG
1047	s mm8.chr6 131770639 56 - 149525685 CATAGGTGGGCACAGCCAAATGACAGAAGCTAAGAACCTATTGTTCTAAAA-CCAGC
1048
1049	a score=19014.0
1050	s hg18.chr7 42309086 40 - 158821424 CTTTTCTTAGGAACAAGCGCCAGGACTGACTTAAGCATTA
1051	s panTro2.chr7 42969933 40 - 160261443 CTTTTCTTAGGAACAAGCGCCAGGACTGACTTAAGCATTA
1052	s mm8.chr6 131770600 39 - 149525685 GGTTTCTTAGGATCCATTACTGTGAAAGCTGC-TGCATGA
1053
1054	a score=57850.0
1055	s hg18.chr7 42309063 23 - 158821424 ATATGTATTTGCCTCTTATTTTC
1056	s mm8.chr6 131770575 23 - 149525685 GTATGTACCTGTCGCCCACTTCC
1057	s panTro2.chr7 42969910 23 - 160261443 ATATGTATTTGCCTCTTATTTTC
1058
1059	a score=41852.0
1060	s hg18.chr7 42309040 23 - 158821424 ATTCTTTTTCTTGTACAGAATCA
1061	s panTro2.chr7 42969887 23 - 160261443 ATTCTTTTTCTTGTACAGAATCA
1062	s mm8.chr6 131770552 23 - 149525685 CTTCTCCTGCTTTTACAGTGCGG
1063
1064	a score=45100.0
1065	s hg18.chr7 42309035 5 - 158821424 CCTTT
1066	s panTro2.chr7 42969882 5 - 160261443 CCTTT
1067	s mm8.chr6 131770535 5 - 149525685 TAATT
1068
1069	a score=1784527.0
1070	s hg18.chr7 116714099 53 + 158821424 T-------GTTTTCGTAAGTTGGAAAAGTTTGACTGGCACAGGAAAG-CATGTCCCATTAA
1071	s panTro2.chr7 117499706 53 + 160261443 T-------GTTTTCATAAGTTGGAAAAGTTTGACTGGCACAGGAAAG-CATGTCCCATTAA
1072	i panTro2.chr7 C 0 C 0
1073	s mm8.chr6 17948973 59 + 149525685 TTTTATTCATTTTCCTAGCTCAG--AGGTTTGACTGGCACAGGACAGCCAGGTCCTGTTAA
1074	i mm8.chr6 C 0 C 0
1075
1076	a score=193794.0
1077	s hg18.chr7 41875637 246 - 158821424 T-CTATATATTTAAGTCTATGAAAGACATATATATACACATATGTATATGTtaataatatataatatagcctatta-----tatattataatcatatatataaattattatattatttatagtattatatatttatttagaataaatattactatattattatataacatatgttatatacaattataattataatatatattgtattatatattataataATGGGTTAGAGACATATATGTGACATATATA
1078	s panTro2.chr7 42526447 252 - 160261443 TGCTATATATTTAAGTCTATGAAAGacatatatatacacatatgcatatattaataatatataatatagcctattatatattatattataatcatatatataaattattatattatttatagtgttatatgtttatttagaataaatattactatattattatataacatatgttatatacaattataattataatatatgttatattatatattataataataggttaGAGACATATATGTGACATATATA
1079
1080	a score=4204045.0
1081	s hg18.chr8 27393549 146 - 146274826 CCCAGCGACAGAGCTGCATGAATACGTTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCACTCTCAGATGAGGCTCGACCCCGTCCTCTTTAAAGACCAGGTCTCTATTTTGAGGAAGAAATACCGAGACATTGAGCGACTTTGA
1082	s panTro2.chr8 27880503 146 - 145085868 CCCAGCGACAGAGCTGCATGAATACGTTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCACTCTCAGATGAGGCTCGACCCCGTCCTCTTTAAAGACCAGGTCTCTATTTTGAGGAAGAAATACCGAGACATTGAGCGACTTTGA
1083	s mm8.chr15 50593685 146 - 103492577 CCCAGCGACAGAGCTGCATGAATACATTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCATTCTCAGATGAGGCTGGACCCGGTCCTCTTTAAAGACCAAGTCTCAATTCTGAGGAAGAAATACAGAGACATTGAACGACTTTGA
1084
1085	a score=1001054.0
1086	s hg18.chr8 27393509 40 - 146274826 ACTTCTCGGGCTTCCCGTTGGGCTGACCCTGACCACTTTG
1087	s panTro2.chr8 27880463 40 - 145085868 ACTTCTCGGGCTTCCCGTTGGGCTGACCCTGACCACTTTG
1088	s mm8.chr15 50593645 40 - 103492577 ACTTCCCGAGCATCCCGCTGGGCCGACCCTGACCACTTTG
1089
1090	a score=57001.0
1091	s hg18.chr9 128764156 6 + 140273252 catcaa
1092	s panTro2.chr9 126736437 6 + 138509991 catcaa
1093	i panTro2.chr9 C 0 C 0
1094	s mm8.chr2 148813766 6 - 181976762 CAGTAA
1095	i mm8.chr2 C 0 C 0
1096
1097	a score=16385.0
1098	s hg18.chr9 128764162 27 + 140273252 actgtatctgtgggccatagttagcct--------------
1099	s panTro2.chr9 126736443 27 + 138509991 actgtatctgtgggccatagttagcct--------------
1100	i panTro2.chr9 C 0 C 0
1101	s mm8.chr2 148813772 31 - 181976762 ----------TGGCACAGGTACACCATTTTCCATGGAGGGA
1102	i mm8.chr2 C 0 C 0
1103
1104	a score=76022.0
1105	s hg18.chr9 11485716 17 - 140273252 TTTTAcaa---gataatgta
1106	s panTro2.chr9 11748557 17 - 138509991 TTTTACAA---GATAATGTA
1107	s mm8.chr2 33142635 20 + 181976762 CTCTAAGAAATGACAATGGC
1108
1109	a score=169894.0
1110	s hg18.chr9 11485632 84 - 140273252 aaatatataaatatCAAGGGAATTAAGTAACAACTCTATAATGTTATATTTGAATTGGAAAGATCAGTATTATATTAGTCAAAT
1111	s panTro2.chr9 11748473 84 - 138509991 aaatatataaatatCAAGGGAATTAAGTAACAACTCTATAATGTTATATTTGAATTGGAAAGATCAGTATTATATTAGTCAAAT
1112	s mm8.chr2 33142562 73 + 181976762 AAATACAAGAAAATCAAGATCCTTAGGGAACATCAGGATAAGGACAGGTAAGAGCTGGGAAGAGTGACT-----------CACC
1113
1114	a score=100082.0
1115	s hg18.chr9 11485610 22 - 140273252 CCAAAATTGTCACTGtaaaata
1116	s panTro2.chr9 11748451 22 - 138509991 CCAAAATTGTCACTGtaaaata
1117	s mm8.chr2 33142540 22 + 181976762 CTAAAACTGCCATTGTCAAATA
1118
1119	a score=31644.0
1120	s hg18.chr9 11485572 38 - 140273252 atG-----------ACGGGATAATAT----AAAGTAAG----TAATGTTGCTAGGAA
1121	s panTro2.chr9 11748413 38 - 138509991 atG-----------ACGGGATAATAT----AAAGTAAG----TAATGTTGCTAGGAA
1122	s mm8.chr2 33142484 56 + 181976762 GAGTGCACAGGCACGAGTTAGAACAACGCAGGAA-AAGTAACCAGTATTGTTAGGAA
1123
1124	a score=59361.0
1125	s hg18.chr9 11485526 46 - 140273252 TAGTAGTAATATTCGtattattat---------------------ttttaaattattttacata----tat
1126	s panTro2.chr9 11748367 46 - 138509991 TAGTAGTAATATTCGtattattat---------------------ttttaaattattttacata----tat
1127	s mm8.chr2 33142413 71 + 181976762 TGACAATAATGGCCTTGCTATTTTAAAGCACCCAGCCCACCTCCACCCAGTGTGCATGCACATACATATGT
1128
1129	a score=132295.0
1130	s hg18.chr9 11485487 39 - 140273252 TGCAAG---------AAAATGTTAAAATTTGACCAGCAGTCTACTGCT
1131	s panTro2.chr9 11748328 39 - 138509991 TGCAAG---------AAAATGTTAAAATTTGACCAGCAGTCTACTGCT
1132	s mm8.chr2 33142362 48 + 181976762 TGCAAACAGAACCACAAAGTGGGAAACTTGAACCTGCAGTCGGCCAGG
1133
1134	a score=57825.0
1135	s hg18.chr9 11485468 19 - 140273252 AAGAAGTAAAAGAACTAAC
1136	s panTro2.chr9 11748309 19 - 138509991 AAGAAGTAAAAGAACTAAC
1137	s mm8.chr2 33142345 17 + 181976762 CAGAAGAAAGGGAAC--AC
1138
1139	a score=350567.0
1140	s hg18.chr9 11485308 160 - 140273252 caggtactgGGATTACAACAGGGTATCTCAGTATGCAGACCCTCTAGAACCAAATTAGCATAACCCTCCTTTTCTGTCCTGGTGCTTCCAAAGACCTTTAAGGGAAAAGTCCAGGGGAGAGGCCC---ACT--TGGGTATGTAAGTAGTAGGAAAGAGAGAAGAC
1141	s mm8.chr2 33142195 150 + 181976762 CAGGTACTGAGATTACACCAGGGCCTCTTGGAGTACAGACCTCC--------------AAAAACCAGCTGCCTGTGACCACCTTCTTCTGAAAACCT-TAGAGGCAAAGAAAAGATGGAAGGCCCAACCCATCAAGAGGTGTGAGAGGAAGGAGGGAGAGACAAC
1142	s panTro2.chr9 11748149 160 - 138509991 caggtactgGGATTACAACAGGGTATCTCAGTATGCAGACCCTCTAGAACCAAATTAGCATAACCCTCCTTTTCTGTCCTGGTGCTTCCAAAGACCTTTAAGGGAAAAGTCCAGGGGAGAGGCCT---ACT--TGGGTATATAAGTAGTAGGAAAGAGAGAAGAC
1143
1144	a score=-38935.0
1145	s hg18.chr9 11485292 16 - 140273252 attatgta-ctg-tgttc
1146	s panTro2.chr9 11748133 16 - 138509991 attatgta-ctg-tgttc
1147	s mm8.chr2 33142179 16 + 181976762 --TGAGCAGCTGCTACTC
1148
1149	a score=73778.0
1150	s hg18.chr9 11485257 35 - 140273252 CATCCATTCACACtccactcattcaacaaatattt
1151	s mm8.chr2 33142146 33 + 181976762 GTATTGGCCCTTCTCCACTCAG--GACAGATCCCC
1152	s panTro2.chr9 11748098 35 - 138509991 CATCCATTCACACtccactcattcaacaaatattt
1153
1154	a score=368197.0
1155	s hg18.chr9 11485084 173 - 140273252 GAATCTTCAAAAGGCTGAGCTCACCAGGAAATACCC-------TTGCTTTGCGGGAAGTGGTTACACCACAAAACAAGACACCCTGGTAATATCGCTCCTTTGGTTGGCACACGCCCTCGCTTGGCAGTGTGCCTAAACACAGCCAGATAATGTTCTGCTATGGCGCTTCCCCTTTCAGG
1156	s panTro2.chr9 11747926 172 - 138509991 GAATCTTCAAAAGGCTGAGCTCACCAGGAAATACCC-------TTGCTTTGCGGGAAGTGGTTACACCAC-AAACAAGACACCCTGGTAATATCGCTCCTTTGGTTGGCACACCCCCTCGCTTGGCAGTGTGCCTAAACACAGCCAGATAATGTTCTGCTATGGCGCTTCCCCTTTCAGG
1157	s mm8.chr2 33141997 149 + 181976762 AAATCTCCAAAAGGCTGAGCCCACCAGGCAAAACCCCTCTTTTTTTCTTTGGGAAAAGTGACCAC----------TGCGCACCCAGTAGACACTGCTCCT-GAGCTGTCCTGTCCTG--------------------AGTCAGTCAGAAAACACTGTGCCAAGATGCTTGCCCTCACTGG
1158
1159	a score=735006.0
1160	s hg18.chr9 11484882 202 - 140273252 AGAGTCACCAGGGGACAGGGCAGTTATGGTTCCATATTTGTAACTTCCATTTTCCTTACTCTCTGCCAATCCTTAACTCACCGTCTGCCTGGCTTCCTCTAAGCCCTGAAATGATGTTCTTTGTGGTCCCCCTTGCAGAAACCAGCAGAAGTCATGAAAAGCCACAGCTCCACCCTCAGTTATCAACTGCATTTGGAAATGT
1161	s panTro2.chr9 11747724 202 - 138509991 AGAGTCACCAGGGGACAGGGCAGTTATGGTTCCATATTTGTAACTTCCATTTTCCTTACTCTCTGCCAATCCTTAACTCACCGTCTGCCTGGCTTCCTCTAAGCCCTGAAATGATGTTCTTTGTGGTCCCCCTTGCAGAAACCAGCAGAAGTCATGAAAAGCCACAGCTCCACCCTCAGTTATCAACTGCATTTGGAAATGT
1162	s mm8.chr2 33141834 163 + 181976762 -----TAGCAGGGATCAGCACAATCGTG-TCCCATGCTTGTGACCTCCACATTCCTTATACTCTGCCAGTCC------------------------TCCTGAGTCCTGGGATGAGGCG--CTGTGGTTACCCCA-CAGAGAAGAGCACAAGTCCTAGT--GCTACA-TTCCAGCCCCAGCTGTGGGAGCCACT---GAATTC
1163
1164	a score=440472.0
1165	s hg18.chr9 11484776 106 - 140273252 GGGGTTCTAGGCCACAACTTGTAAGTTCAACACAGCTGTGAGATATTATGCTACAAAGCTATATCTGCATTAATACACCAATTTTTGATAAACTTGGTCACTCGTT
1166	s panTro2.chr9 11747618 106 - 138509991 GGGGTTCTAGGCCACAACTTGTAAGTTCAACACAGCTGTGAGATATTATGCTACAAAGCTATATCTGCATTAATACACCAATTTTTGATAAACTTGGTCACTCGTT
1167	s mm8.chr2 33141754 80 + 181976762 AG-------------------------CAGCCTAGCTATAAGCAGA-ATGCCACAGAATTACATGTACGTTAAGTTGCCAGCTCTTTATAAAACTGGTCACTTATT
1168
1169	a score=157210.0
1170	s hg18.chr9 11484715 61 - 140273252 CCTGGCAGCCAGGAATCCACCCAGGAATCTACCCTGCAACCCAATCCACCACAGTGGCAAT
1171	s mm8.chr2 33141702 52 + 181976762 CCTGGCAGGCAGGAGTCTAACCAGA------G-CTGTCACCCAGTT-ATCCAGGTC-CAAC
1172	s panTro2.chr9 11747557 61 - 138509991 CCTGGCAGCCAGGAATCCACCCAGGAATCTACCCTGCAACCCAATCCACCACAGTGGCAAT
1173
1174	a score=-50628.0
1175	s hg18.chr9 11484601 114 - 140273252 GTAAGGAGCTCTGGTAGAGACAAAACACCACCTTGAAAACATACCCTTTTAGAAGGCTGCTACCACCAGGACCTTCAGACAGACCTCCTTTACAATGCAGCCCTTGCCCCAAGC
1176	s panTro2.chr9 11747443 114 - 138509991 GTAAGGAGCTCTGGTAGAGACAAAACACCACCTTGAAAACATACCCTTTTAGAAGGCTGCTACCACCAGGACCTTCAGACAGACCTCCTTTACAATGCAGCCCTTGCCCCGAGC
1177	s mm8.chr2 33141592 110 + 181976762 GTAGGGAATACTG-TGGACACAAAATGCTATGCCAAAACATGCCAGGTCAAGCAGGATGCAGCCACCAGGACCCTCAAACAAAG-CCCTTCATGAGGTAGCGTCA--CCCGAGC
1178
1179	a score=125989.0
1180	s hg18.chr9 11484506 95 - 140273252 ACAAAAACAGTTCTGACATTTAGACCAGCCTCTGAGACACTGCTGCGCCTTCAACTCCATAGGCTGGGAACTGGACATACTGACAGACAGATGTG
1181	s panTro2.chr9 11747348 95 - 138509991 ACAAAAACAGTTCTGACATTTAGACCAGCCTCTGAGACACTGCTGCGCCTTCAACTCCATAGGCTGGGAACTGGACATACTGACAGACAGATGTG
1182	s mm8.chr2 33141545 47 + 181976762 -----------------------------CTCTGAGGAGCTGTAGGAGCCTCCGTTCTGTG------------AGTATGA-------CAGACTTG
1183
1184	a score=128122.0
1185	s hg18.chr9 11484395 111 - 140273252 AGCTCAGCTCTGACAGAACCCTGGGCTGAATAAAGCACAGGCTGTGCCCATTTTCAGCACATTCTAAGAACAGCAGTTTCCCCTTGATGCTGCTCCATGCTAAAACTAATG
1186	s panTro2.chr9 11747237 111 - 138509991 AGCTCAGCTCTGACAGAACCCTGGGCTGAATAAAGCACAGGCTGTGCCCATTTTCAGCACATTCTAAGAACAGCAGTTTCCCCTTGATGCTGCTCCATGCTAAAACTAATG
1187	s mm8.chr2 33141446 99 + 181976762 AGCTCAACTCTGATAGGGTCATGGGCTAAGTACAGCCAAGGCCATGTCCATTTCCAGCTCAGTTTGAGAACAG-AGATCCACCATGCTGGGGTCTGGTGC-----------
1188
1189	a score=88798.0
1190	s hg18.chr9 11484289 106 - 140273252 acttgtcctaagtctccaagctag-aggggtgaggctgtgactcaacctcagcttcatcagatcaaagttcatgctcttCAAGCTGTGTGGCTTTAACAGACCCAGC
1191	s panTro2.chr9 11747131 106 - 138509991 acttgtcctaagtctccaagctag-aggggtgaggctgcgactcaacctcagcttcatcagatcaaagttcatcctcttCAAGCTGTGTGGCTTTAACAGACCCAGC
1192	s mm8.chr2 33141368 78 + 181976762 GT----CCAGCATC--TTAGCTGGGATGAGAGCAGCCACA-CCCAT-CCCAGCTCTGACAGAT-------------------GTTATATATAGTTATTAAGC--AGT
1193
1194	a score=128280.0
1195	s hg18.chr9 11484174 115 - 140273252 gctttgtacaggcaccgcgctaagttcttacatgcccactgtaaggtaaaagc---------tatgacttccaccccccgccaactttacacatgagaaaatcaaggcataaagaaaatacatg
1196	s panTro2.chr9 11747016 115 - 138509991 gctttgtacaggcaccgtactaagttcttacatgcccactgtaaggtaaaagc---------tatgatttccaccccccgccaactttacacatgagaaaatcaaggcataaagaaaatacatg
1197	s mm8.chr2 33141283 85 + 181976762 ---------------------------CTGGGTAGCTGCTGTGAGTTcaaaacaaaacaaaacaaaaTCACATCTC-------CCAT---GCACAAGGAAACTATAAGATAATGAGTAAGGA--
1198
1199	a score=175099.0
1200	s hg18.chr9 11484116 58 - 140273252 ACAGTGCCTATTCAAACTATACATTGGTGAaatgatagccacgcatgactaggagctt
1201	s panTro2.chr9 11746958 58 - 138509991 ACAGTGCCTATTCAAACTATACACTGGTGAaatgatagccacgcatgactaggagctt
1202	s mm8.chr2 33141234 49 + 181976762 ACAGAGCCAGCTCAGACTGAGCAGCAG-----CAATAACCACAAATGACTGACA----
1203
1204	a score=294709.0
1205	s hg18.chr9 128882427 96 + 140273252 aacacattgcttgttgtaaaaattattcacactgaaaagaagtttataaagtaaaaagtgaatgtgccattcttcttctcccactttccagaggca
1206	s panTro2.chr9 126860344 91 + 138509991 AACACATTGCTTGTTGTAAAAATTATTCACACT-----GAAGTTTATAAAGTAAAAAGTGAATGTGCCATTATTCTTCTCCCACTTTCCAGAGGCA
1207	i panTro2.chr9 C 0 C 0
1208	s mm8.chr2 148901693 74 - 181976762 -------------CTGTGGAGATCATCCACATTACAAAGAAGTCTATAAAGTAAAATGTGAAAGT--CGCTCTGCCCCTCC-------CTCCGGCG
1209	i mm8.chr2 C 0 C 0
1210
1211	a score=-107864.0
1212	s hg18.chr9 11336020 3 - 140273252 ACT
1213	s panTro2.chr9 11593518 3 - 138509991 ACT
1214	s mm8.chr2 33023385 3 + 181976762 ACT
1215
1216	a score=-82513.0
1217	s hg18.chr9 11335985 35 - 140273252 ACGTGTCAATCTCCCTCCCCAAAGAGGGAGAGAGG
1218	s panTro2.chr9 11593483 35 - 138509991 GCGTGTCAATCTCCCTCCCCAGAGAGGGAGAGAGG
1219	s mm8.chr2 33023361 24 + 181976762 ---------TCTTCCTTCCC--ACCAGGAGGGAGG
1220
1221	a score=80475.0
1222	s hg18.chr9 11335945 40 - 140273252 ACCAGTTTCTATGTTCAATGTGACCCAAACTCCAGGGGCT
1223	s panTro2.chr9 11593443 40 - 138509991 ACCAGTTTCTATGTTCAATGTGACCCAAACTCCAGGAGCT
1224	s mm8.chr2 33023351 10 + 181976762 GCCTGCCTCT------------------------------
1225
1226	a score=-9994.0
1227	s hg18.chr9 11335933 12 - 140273252 CTAGAA---------------------------ACAGCC
1228	s panTro2.chr9 11593431 12 - 138509991 CTAGAA---------------------------ACAGCC
1229	s mm8.chr2 33023313 38 + 181976762 -CAGAACAGTTTACGCTCCGTGAGACCTGCGGGCCAGCT
1230
1231	a score=-18269.0
1232	s hg18.chr9 11335906 27 - 140273252 GAGTTTCTGCTTTCAGACATCTCTATA
1233	s panTro2.chr9 11593404 27 - 138509991 GGGTTTCTGCTTTCAGAAATCTCTATA
1234	s mm8.chr2 33023295 18 + 181976762 AAGCCTCTGCAG-CAGAAA--------
1235
1236	a score=163495.0
1237	s hg18.chr9 11335807 99 - 140273252 ATGTGGGCCCATCTTGCAAGGGCCACAGAGACAGGAATGAGAGGGTGGAGCCCACTTCTTCCCAGATACTCAAGTCCTTCCAAGGCCTTGTGACCCCAT
1238	s panTro2.chr9 11593305 99 - 138509991 ATGTGGGCCCATCTTGCAAGGGCCACAGAGACAGGAATGAGAGGGTGGAGCCCACTTCTTCCCAGATACTCAAGTCCTTCCAAGGCCTTGTGACCCCAT
1239	s mm8.chr2 33023200 95 + 181976762 ATCTTGGTCT-CCTGGCAAGACCACAGAGAATTAGATAGTGAGAATGGACCCCACCTCTTCTCAGCGACCCAAGTCCACT---GTCCTACAGGCTTCCA
1240
1241	a score=100797.0
1242	s hg18.chrX 122745047 18 + 154913754 accatcaagaaagtaaaa
1243	s panTro2.chrX 123190863 18 + 155361357 actatcaagaaagtaaaa
1244	i panTro2.chrX C 0 I 759
1245
1246	a score=0.0
1247	s hg18.chrX 122745065 483 + 154913754 agacaacctacagaatgggagaaaatatttgcaaaccatatatctgacaagggacttttatctagaatgtataaccttaacattcaataatctttaaaaaaaaaaaagcccaatttgtttttttgtttttttttttgtttgttttttgttttttgtttttttttgagacggaggctcactctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcccagctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcttgatctgcccaccttggcctcccaaagtgctgggattacaggtgagagccaccacgcccagccaaaaaaaaaagcccaattttcaaaaaggggcaaagggg
1248
1249	a score=17937.0
1250	s hg18.chrX 122745548 189 + 154913754 ccgggcacggtggctcacgcctgtaatctcagcactttgggaggccaaggcagggggatcaggaggtcaggagttcgagaccagcctggccaaagcgaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcagtacctgtaatcccagctactcg
1251	s panTro2.chrX 123191640 189 + 155361357 ccgggcacggtggctcacgcctgtaatctcagcactttgggaggccaaggcagggggatcaggaggtcaggagttcgagaccagcctggccaaagggaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcagtacctgtaatcccagctactcg
1252	i panTro2.chrX I 759 C 0
1253
1254	a score=88563.0
1255	s hg18.chrX 122745737 187 + 154913754 ggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtaagctgagattgccccattgcactccagcctgggcaacagagtgagactcctactcaaaaaaaaaaaaaaaaaaaa-gttggcggatgcggggacagcaaagggcttaagtagacatttcttcaaagaagatatacaa
1256	s panTro2.chrX 123191829 188 + 155361357 ggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtaagctgagattgccccattgcactccagcctgggcaacagagtgagactcctactcaaaaaaaaaaaaaaaaaaaaaGTTGGCAGATGCGGGGACAgcaaagggcttaagtagacatttcttcaaagaagatatacaa
1257	i panTro2.chrX C 0 C 0
1258
1259	a score=60355.0
1260	s hg18.chrX 2264558 232 - 154913754 ctatctgggctcactgccagctccgcctcccgggttcacgccattcttctgcctcagcgtcccgagtagctgggactataggcgcccgccaccgcgcccggctaaatttttgtatttttagtagagatggggtttcaccctgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcaccctcccaaagtgctgggatgccaggcgggagcccccgcgcc
1261	s panTro2.chrX 2180049 232 - 155361357 ctctctgggctcactgccagctctgcctcccgggttcatgccattcttctgcctcagcgtcccgagtagctgggactacaggcgcccgcccccgcgcccggctaaatttttgtatttttagtagagatggggtttcaccctgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcaccctcccaaagtgctgggattacaggcgtgagccaccgtgcc
1262
1263	a score=-54866.0
1264	s hg18.chrX 152691446 7 + 154913754 TCAGAAC
1265	s panTro2.chrX 153225439 7 + 155361357 TCAGAAC
1266	i panTro2.chrX C 0 C 0
1267	s mm8.chrX 70018668 2 + 165556469 -----GC
1268	i mm8.chrX C 0 C 0
1269
1270	a score=-88144.0
1271	s hg18.chrX 152691453 18 + 154913754 CGGAGGGCCTTGGGCATG
1272	s mm8.chrX 70018670 18 + 165556469 TGGAGGGTCTTGAGGATG
1273	i mm8.chrX C 0 C 0
1274	s panTro2.chrX 153225446 18 + 155361357 CGGAGGGCCTTGGGCATG
1275	i panTro2.chrX C 0 C 0
1276
1277	a score=2270241.0
1278	s hg18.chrX 2219694 31 - 154913754 AGGCCAACCTGCGTAGCATGAGCTTGGGGTT
1279	s panTro2.chrX 2133314 5 - 155361357 --------------------------GGGTT
1280	s mm8.chrX 95535223 31 - 165556469 AGGCCAACCTGCGTAACATGAGCTTGGGGTT
1281
1282	a score=-439513.0
1283	s hg18.chrX 2219662 32 - 154913754 AAGCCCTCACCCCCGCCACCGGGTCCAGGTCA
1284	s mm8.chrX 95535191 32 - 165556469 AAGCCCCTGCCCCTGCCCCCACATTCAGGTCA
1285
1286	a score=-528572.0
1287	s hg18.chrX 2219603 59 - 154913754 TGGCCCCACCCGCCCCTGGACAGAGCCCGCCCAGGGTGCGATGGGGGCAGGTCTGTGGC
1288	s mm8.chrX 95535133 58 - 165556469 TGGCTCCTGAC-CTCAGGGCCTGATCCCACACCACCTGTATTAGCAATGGGTCAGAGGT
1289
1290	a score=-746000.0
1291	s hg18.chrX 2219540 63 - 154913754 CTTTGTGCCTGTGTCCCTGCTGAGGACATCTCACTTTCCTTCCC--CCCACCTGCTGGGGCTTCC
1292	s mm8.chrX 95535080 53 - 165556469 ------------GGCCCTGGTGAGGATAGTCCTCAGATCTTCTCTGAGCCCACTCCTGGAGTTCC
1293
1294	a score=-199075.0
1295	s hg18.chrX 2219515 25 - 154913754 CGGGGAGCCGGCCACAGGGTCAGGC
1296	s mm8.chrX 95535063 17 - 165556469 TATGGAAGAAGCCCCAA--------
1297
1298	a score=1368003.0
1299	s hg18.chrX 2219491 24 - 154913754 TTCTCCACCATGGTCTCTGTCCTG
1300	s mm8.chrX 95535039 24 - 165556469 TTCTCTACCATGGTCTCCGTCCTG
1301

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