1 | deletionHoptspot1 [A/C][G/T][A/G][A/G]GT |
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2 | deletionHoptspot1rev TG[A/G][A/G][G/T][A/C] |
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3 | deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA |
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4 | deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T] |
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5 | deletionHoptspot2 [C/T][C/T][C/T]TG |
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6 | deletionHoptspot2rev GT[C/T][C/T][C/T] |
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7 | deletionHoptspot2comp [A/G][A/G][A/G]AC |
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8 | deletionHoptspot2revcomp CA[A/G][A/G][A/G] |
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9 | deletionHoptspot3 CAG[A/G] |
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10 | deletionHoptspot3rev [A/G]GAC |
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11 | deletionHoptspot3comp GTC[C/T] |
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12 | deletionHoptspot3revcomp [C/T]CTG |
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13 | dnaPolPauseFrameshift1 GAG |
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14 | dnaPolPauseFrameshift1comp CTC |
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15 | dnaPolPauseFrameshift2 ACG |
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16 | dnaPolPauseFrameshift2rev GCA |
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17 | dnaPolPauseFrameshift2comp TGC |
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18 | dnaPolPauseFrameshift2revcomp CGT |
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19 | dnaPolPauseFrameshift3 GC[G/C] |
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20 | dnaPolPauseFrameshift3rev [G/C]CG |
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21 | dnaPolPauseFrameshift3comp CG[G/C] |
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22 | dnaPolPauseFrameshift3revcomp [G/C]GC |
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23 | dnaPolPauseFrameshift4 [A/T]GGAG |
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24 | dnaPolPauseFrameshift4rev GAGG[A/T] |
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25 | dnaPolPauseFrameshift4comp [A/T]CCTC |
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26 | dnaPolPauseFrameshift4revcomp CTCC[A/T] |
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27 | dnaPolPauseFrameshift5 TCCCCC |
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28 | dnaPolPauseFrameshift5rev CCCCCT |
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29 | dnaPolPauseFrameshift5comp AGGGGG |
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30 | dnaPolPauseFrameshift5revcomp GGGGGA |
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31 | dnaPolPauseFrameshift6 CTGGCG |
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32 | dnaPolPauseFrameshift6rev GCGGTC |
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33 | dnaPolPauseFrameshift6comp GACCGC |
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34 | dnaPolPauseFrameshift6revcomp CGCCAG |
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35 | dnaPolPauseFrameshift7 ACCC[A/T][A/G] |
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36 | dnaPolPauseFrameshift7rev [A/G][A/T]CCCA |
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37 | dnaPolPauseFrameshift7comp TGGG[A/T][T/C] |
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38 | dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT |
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39 | dnaPolPauseFrameshift8 TTTT |
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40 | dnaPolPauseFrameshift8comp AAAA |
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41 | dnaPolPauseFrameshift9 TGG[A/C/G/T]GT |
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42 | dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT |
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43 | dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA |
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44 | dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA |
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45 | dnaPolPauseFrameshift10 ACCCCA |
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46 | dnaPolPauseFrameshift10comp TGGGGT |
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47 | indelHotspot1 GTAAGT |
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48 | indelHotspot1rev TGAATG |
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49 | indelHotspot1comp CATTCA |
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50 | indelHotspot1revcomp ACTTAC |
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51 | insertionHotspot1 AT[A/C][A/C]GCC |
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52 | insertionHotspot1rev CCG[A/C][A/C]TA |
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53 | insertionHotspot1comp TA[T/G][T/G]CGG |
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54 | insertionHotspot1revcomp GGC[T/G][T/G]AT |
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55 | insertionHotspot2 TACC[A/G]C |
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56 | insertionHotspot2rev C[A/G]CCAT |
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57 | insertionHotspot2comp ATGG[T/C]G |
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58 | insertionHotspot2revcomp G[T/C]GGTA |
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59 | topoisomeraseCleavageSite1 CAT |
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60 | topoisomeraseCleavageSite1rev TAC |
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61 | topoisomeraseCleavageSite1comp GTA |
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62 | topoisomeraseCleavageSite1revcomp ATG |
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63 | topoisomeraseCleavageSite2 CT[T/C] |
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64 | topoisomeraseCleavageSite2rev [T/C]TC |
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65 | topoisomeraseCleavageSite2comp GA[A/G] |
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66 | topoisomeraseCleavageSite2revcomp [A/G]AG |
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67 | topoisomeraseCleavageSite3 GT[T/C] |
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68 | topoisomeraseCleavageSite3rev [T/C]TG |
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69 | topoisomeraseCleavageSite3comp CA[A/G] |
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70 | topoisomeraseCleavageSite3revcomp [A/G]AC |
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71 | topoisomeraseCleavageSite4 [A/G]A[T/G] |
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72 | topoisomeraseCleavageSite4rev [T/G]A[A/G] |
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73 | topoisomeraseCleavageSite4comp [T/C]T[A/C] |
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74 | topoisomeraseCleavageSite4revcomp [A/C]T[T/C] |
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75 | topoisomeraseCleavageSite5 [T/C]CCTT |
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76 | topoisomeraseCleavageSite5rev TTCC[T/C] |
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77 | topoisomeraseCleavageSite5comp [A/G]GGAA |
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78 | topoisomeraseCleavageSite5revcomp AAGG[A/G] |
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79 | topoisomeraseCleavageSite6 [T/C]TA |
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80 | topoisomeraseCleavageSite6rev AT[T/C] |
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81 | topoisomeraseCleavageSite6comp [A/G]AT |
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82 | topoisomeraseCleavageSite6revcomp TA[A/G] |
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83 | translinTarget1 ATGCAG |
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84 | translinTarget1rev GACGTA |
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85 | translinTarget1comp TACGTC |
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86 | translinTarget1revcomp CTGCAT |
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87 | translinTarget2 GCCC[A/T][G/C][G/C][A/T] |
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88 | translinTarget2rev [A/T][G/C][G/C][A/T]CCCG |
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89 | translinTarget2comp CGGG[A/T][G/C][G/C][A/T] |
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90 | translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC |
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91 | vDjRecombinationSignal1 CACAGTG |
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92 | vDjRecombinationSignal1rev GTGACAC |
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93 | vDjRecombinationSignal1comp GTGTCAC |
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94 | vDjRecombinationSignal1revcomp CACTGTG |
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95 | vDjRecombinationSignal2 ACAAAAACC |
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96 | vDjRecombinationSignal2rev CCAAAAACA |
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97 | vDjRecombinationSignal2comp TGTTTTTGG |
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98 | vDjRecombinationSignal2revcomp GGTTTTTGT |
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99 | x-likeSite1 CCG |
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100 | x-likeSite1rev GCC |
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101 | x-likeSite1comp GGC |
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102 | x-likeSite1revcomp CGG |
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103 | x-likeSite2 GCTGGTGG |
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104 | x-likeSite2rev GGTGGTCG |
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105 | x-likeSite2comp CGACCACC |
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106 | x-likeSite2revcomp CCACCAGC |
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107 | x-likeSite3 GGGCAGGA[A/C/G/T]G |
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108 | x-likeSite3rev G[A/C/G/T]AGGACGGG |
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109 | x-likeSite3comp CCCGTCCT[A/C/G/T]C |
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110 | x-likeSite3revcomp C[A/C/G/T]TCCTGCCC |
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111 | x-likeSite4 GC[A/T]GG[A/T]GG |
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112 | x-likeSite4rev GG[A/T]GG[A/T]CG |
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113 | x-likeSite4comp CG[A/T]CC[A/T]CC |
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114 | x-likeSite4revcomp CC[A/T]CC[A/T]GC |
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115 | x-likeSite5 GGAGGTGGGCAGGA[A/G]G |
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116 | x-likeSite5rev G[A/G]AGGACGGGTGGAGG |
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117 | x-likeSite5comp CCTCCACCCGTCCT[T/C]C |
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118 | x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC |
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119 | x-likeSite6 AGAGGTGGGCAGGTGG |
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120 | x-likeSite6rev GGTGGACGGGTGGAGA |
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121 | x-likeSite6comp TCTCCACCCGTCCACC |
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122 | x-likeSite6revcomp CCACCTGCCCACCTCT |
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