root/galaxy-central/test-data/motifs2.tabular

リビジョン 2, 4.2 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

  • 属性 svn:executable の設定値 *
行番号 
1deletionHoptspot1       [A/C][G/T][A/G][A/G]GT
2deletionHoptspot1rev    TG[A/G][A/G][G/T][A/C]
3deletionHoptspot1comp   [G/T][A/C][C/T][C/T]CA
4deletionHoptspot1revcomp        AC[C/T][C/T][A/C][G/T]
5deletionHoptspot2       [C/T][C/T][C/T]TG
6deletionHoptspot2rev    GT[C/T][C/T][C/T]
7deletionHoptspot2comp   [A/G][A/G][A/G]AC
8deletionHoptspot2revcomp        CA[A/G][A/G][A/G]
9deletionHoptspot3       CAG[A/G]
10deletionHoptspot3rev    [A/G]GAC
11deletionHoptspot3comp   GTC[C/T]
12deletionHoptspot3revcomp        [C/T]CTG
13dnaPolPauseFrameshift1  GAG
14dnaPolPauseFrameshift1comp      CTC
15dnaPolPauseFrameshift2  ACG
16dnaPolPauseFrameshift2rev       GCA
17dnaPolPauseFrameshift2comp      TGC
18dnaPolPauseFrameshift2revcomp   CGT
19dnaPolPauseFrameshift3  GC[G/C]
20dnaPolPauseFrameshift3rev       [G/C]CG
21dnaPolPauseFrameshift3comp      CG[G/C]
22dnaPolPauseFrameshift3revcomp   [G/C]GC
23dnaPolPauseFrameshift4  [A/T]GGAG
24dnaPolPauseFrameshift4rev       GAGG[A/T]
25dnaPolPauseFrameshift4comp      [A/T]CCTC
26dnaPolPauseFrameshift4revcomp   CTCC[A/T]
27dnaPolPauseFrameshift5  TCCCCC
28dnaPolPauseFrameshift5rev       CCCCCT
29dnaPolPauseFrameshift5comp      AGGGGG
30dnaPolPauseFrameshift5revcomp   GGGGGA
31dnaPolPauseFrameshift6  CTGGCG
32dnaPolPauseFrameshift6rev       GCGGTC
33dnaPolPauseFrameshift6comp      GACCGC
34dnaPolPauseFrameshift6revcomp   CGCCAG
35dnaPolPauseFrameshift7  ACCC[A/T][A/G]
36dnaPolPauseFrameshift7rev       [A/G][A/T]CCCA
37dnaPolPauseFrameshift7comp      TGGG[A/T][T/C]
38dnaPolPauseFrameshift7revcomp   [T/C][A/T]GGGT
39dnaPolPauseFrameshift8  TTTT
40dnaPolPauseFrameshift8comp      AAAA
41dnaPolPauseFrameshift9  TGG[A/C/G/T]GT
42dnaPolPauseFrameshift9rev       TG[A/C/G/T]GGT
43dnaPolPauseFrameshift9comp      ACC[A/C/G/T]CA
44dnaPolPauseFrameshift9revcomp   AC[A/C/G/T]CCA
45dnaPolPauseFrameshift10 ACCCCA
46dnaPolPauseFrameshift10comp     TGGGGT
47indelHotspot1   GTAAGT
48indelHotspot1rev        TGAATG
49indelHotspot1comp       CATTCA
50indelHotspot1revcomp    ACTTAC
51insertionHotspot1       AT[A/C][A/C]GCC
52insertionHotspot1rev    CCG[A/C][A/C]TA
53insertionHotspot1comp   TA[T/G][T/G]CGG
54insertionHotspot1revcomp        GGC[T/G][T/G]AT
55insertionHotspot2       TACC[A/G]C
56insertionHotspot2rev    C[A/G]CCAT
57insertionHotspot2comp   ATGG[T/C]G
58insertionHotspot2revcomp        G[T/C]GGTA
59topoisomeraseCleavageSite1      CAT
60topoisomeraseCleavageSite1rev   TAC
61topoisomeraseCleavageSite1comp  GTA
62topoisomeraseCleavageSite1revcomp       ATG
63topoisomeraseCleavageSite2      CT[T/C]
64topoisomeraseCleavageSite2rev   [T/C]TC
65topoisomeraseCleavageSite2comp  GA[A/G]
66topoisomeraseCleavageSite2revcomp       [A/G]AG
67topoisomeraseCleavageSite3      GT[T/C]
68topoisomeraseCleavageSite3rev   [T/C]TG
69topoisomeraseCleavageSite3comp  CA[A/G]
70topoisomeraseCleavageSite3revcomp       [A/G]AC
71topoisomeraseCleavageSite4      [A/G]A[T/G]
72topoisomeraseCleavageSite4rev   [T/G]A[A/G]
73topoisomeraseCleavageSite4comp  [T/C]T[A/C]
74topoisomeraseCleavageSite4revcomp       [A/C]T[T/C]
75topoisomeraseCleavageSite5      [T/C]CCTT
76topoisomeraseCleavageSite5rev   TTCC[T/C]
77topoisomeraseCleavageSite5comp  [A/G]GGAA
78topoisomeraseCleavageSite5revcomp       AAGG[A/G]
79topoisomeraseCleavageSite6      [T/C]TA
80topoisomeraseCleavageSite6rev   AT[T/C]
81topoisomeraseCleavageSite6comp  [A/G]AT
82topoisomeraseCleavageSite6revcomp       TA[A/G]
83translinTarget1 ATGCAG
84translinTarget1rev      GACGTA
85translinTarget1comp     TACGTC
86translinTarget1revcomp  CTGCAT
87translinTarget2 GCCC[A/T][G/C][G/C][A/T]
88translinTarget2rev      [A/T][G/C][G/C][A/T]CCCG
89translinTarget2comp     CGGG[A/T][G/C][G/C][A/T]
90translinTarget2revcomp  [A/T][G/C][G/C][A/T]GGGC
91vDjRecombinationSignal1 CACAGTG
92vDjRecombinationSignal1rev      GTGACAC
93vDjRecombinationSignal1comp     GTGTCAC
94vDjRecombinationSignal1revcomp  CACTGTG
95vDjRecombinationSignal2 ACAAAAACC
96vDjRecombinationSignal2rev      CCAAAAACA
97vDjRecombinationSignal2comp     TGTTTTTGG
98vDjRecombinationSignal2revcomp  GGTTTTTGT
99x-likeSite1     CCG
100x-likeSite1rev  GCC
101x-likeSite1comp GGC
102x-likeSite1revcomp      CGG
103x-likeSite2     GCTGGTGG
104x-likeSite2rev  GGTGGTCG
105x-likeSite2comp CGACCACC
106x-likeSite2revcomp      CCACCAGC
107x-likeSite3     GGGCAGGA[A/C/G/T]G
108x-likeSite3rev  G[A/C/G/T]AGGACGGG
109x-likeSite3comp CCCGTCCT[A/C/G/T]C
110x-likeSite3revcomp      C[A/C/G/T]TCCTGCCC
111x-likeSite4     GC[A/T]GG[A/T]GG
112x-likeSite4rev  GG[A/T]GG[A/T]CG
113x-likeSite4comp CG[A/T]CC[A/T]CC
114x-likeSite4revcomp      CC[A/T]CC[A/T]GC
115x-likeSite5     GGAGGTGGGCAGGA[A/G]G
116x-likeSite5rev  G[A/G]AGGACGGGTGGAGG
117x-likeSite5comp CCTCCACCCGTCCT[T/C]C
118x-likeSite5revcomp      C[T/C]TCCTGCCCACCTCC
119x-likeSite6     AGAGGTGGGCAGGTGG
120x-likeSite6rev  GGTGGACGGGTGGAGA
121x-likeSite6comp TCTCCACCCGTCCACC
122x-likeSite6revcomp      CCACCTGCCCACCTCT
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。