root/galaxy-central/test-data/rgtestouts/rgGRR/rgGRRtest1.html @ 2

リビジョン 2, 2.4 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central
行番号 
1<?xml version="1.0" encoding="utf-8" ?>
2<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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6<meta name="generator" content="Galaxy rgGRR.py tool output - see http://g2.trac.bx.psu.edu/" />
7<title></title>
8<link rel="stylesheet" href="/static/style/base.css" type="text/css" />
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10<body>
11<div class="document">
12<h4><div>Output from rgGRR.py run at 19/05/2010 15:14:41<br>
13</h4>
14If you need to rerun this analysis, the command line was
15<pre>'/opt/galaxy/tools/rgenetics/rgGRR.py' '/opt/galaxy/test-data/tinywga' 'tinywga' '/opt/galaxy/test-data/rgtestouts/rgGRR/rgGRRtest1.html' '/opt/galaxy/test-data/rgtestouts/rgGRR' 'rgGRRtest1' '100' '6'</pre>
16</div> <embed src="rgGRRtest1.svg" type="image/svg+xml" width="1150" height="600" /><div><h4>Click the links below to save output files and plots</h4><br><ol>
17<li><a href="rgGRRtest1.svg" type="image/svg+xml" >rgGRR Plot (requires SVG)</a></li>
18<li><a href="rgGRRtest1_table.xls">Mean by SD alleles shared - 780 rows</a></li>
19<li><a href="rgGRRtest1.html">rgGRRtest1.html</a></li>
20<li><a href="Log_rgGRRtest1.txt">Log_rgGRRtest1.txt</a></li>
21</ol></div><div><h2>Outliers in tab delimited files linked above are also listed below</h2></div><div><hr><h3>Log from this job (also stored in Log_rgGRRtest1.txt)</h3><pre>Reading genotypes for 40 subjects and 25 markers
22Calculating 780 pairs...
23Estimated time is 0.00 to 0.00 seconds ...
24T1:  0.00254368782043   T2:  0.018296957016     T3:  0.000444173812866  TOT: 0.022047996521     0 pairs with no (or not enough) comparable genotypes (0.0%)
25Relstate dupe (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
26Relstate parentchild (n=26): mean(mean)=1.68 sdev(mean)=0.19, mean(sdev)=0.39 sdev(sdev)=0.19
27Relstate sibpairs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
28Relstate halfsibs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
29Relstate parents (n=40): mean(mean)=1.46 sdev(mean)=0.25, mean(sdev)=0.55 sdev(sdev)=0.17
30Relstate unrelated (n=714): mean(mean)=1.44 sdev(mean)=0.21, mean(sdev)=0.58 sdev(sdev)=0.15
31Relstate unknown (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
32780 pairs are available of 780
33Outliers: 0
34Plotting ...</pre><hr></div></body></html>
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