Output from rgGRR.py run at 19/05/2010 15:14:41

If you need to rerun this analysis, the command line was 
'/opt/galaxy/tools/rgenetics/rgGRR.py' '/opt/galaxy/test-data/tinywga' 'tinywga' '/opt/galaxy/test-data/rgtestouts/rgGRR/rgGRRtest1.html' '/opt/galaxy/test-data/rgtestouts/rgGRR' 'rgGRRtest1' '100' '6'

Click the links below to save output files and plots


  1. rgGRR Plot (requires SVG)
  2. Mean by SD alleles shared - 780 rows
  3. rgGRRtest1.html
  4. Log_rgGRRtest1.txt

Outliers in tab delimited files linked above are also listed below

Log from this job (also stored in Log_rgGRRtest1.txt)

Reading genotypes for 40 subjects and 25 markers
Calculating 780 pairs...
Estimated time is 0.00 to 0.00 seconds ...
T1:  0.00254368782043	T2:  0.018296957016	T3:  0.000444173812866	TOT: 0.022047996521	0 pairs with no (or not enough) comparable genotypes (0.0%)
Relstate dupe (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
Relstate parentchild (n=26): mean(mean)=1.68 sdev(mean)=0.19, mean(sdev)=0.39 sdev(sdev)=0.19
Relstate sibpairs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
Relstate halfsibs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
Relstate parents (n=40): mean(mean)=1.46 sdev(mean)=0.25, mean(sdev)=0.55 sdev(sdev)=0.17
Relstate unrelated (n=714): mean(mean)=1.44 sdev(mean)=0.21, mean(sdev)=0.58 sdev(sdev)=0.15
Relstate unknown (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
780 pairs are available of 780
Outliers: 0
Plotting ...