1 | #This is a sample file distributed with Galaxy that enables tools |
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2 | #to use a directory of FileBinnedArray data files. You will need |
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3 | #to create these data files and then create a binned_scores.loc file |
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4 | #similar to this one (store it in this directory ) that points to |
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5 | #the directories in which those files are stored. The binned_scores.loc |
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6 | #file has this format (white space characters are TAB characters): |
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7 | # |
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8 | #<build> <description> <dir> |
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9 | # |
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10 | #So, for example, if you had hg16 ENCODE binCons on MLAGAN alignments |
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11 | #stored in /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan, |
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12 | #then the binned_scores.loc entry would look like this: |
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13 | # |
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14 | #hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan |
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15 | # |
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16 | #and your /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan |
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17 | #directory would contain all of your "binned" files (e.g.): |
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18 | # |
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19 | #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 ENm001 |
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20 | #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 ENm002 |
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21 | #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 ENm003 |
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22 | #...etc... |
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23 | # |
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24 | #Your binned_scores.loc file should include an entry per line for each |
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25 | #"binned" file you have stored. For example: |
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26 | # |
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27 | #hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan |
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28 | #hg16 ENCODE binCons on TBA alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_tba |
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29 | #hg16 ENCODE GERP on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_lagan |
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30 | #hg16 ENCODE GERP on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_tba |
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31 | #hg16 ENCODE phastCons on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_phastcons_lagan |
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32 | #hg16 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_phatcons_tba |
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33 | #hg17 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg17/phastcons_encode_sep2005_tba |
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34 | #hg17 phastCons on 8-species multiz, 16-Jun-2005 /depot/data2/galaxy/binned_scores/hg17/phastcons_mzPt1Mm5Rn3Cf1Gg2Fr1Dr1/ |
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35 | #hg17 phastCons on 17-species multiz, 13-Apr-2006 /depot/data2/galaxy/binned_scores/hg17/phastCons17way/ba |
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36 | #hg17 ESPERR Regulatory Potential, 7-species, 23-Jun-2006 /depot/data2/galaxy/binned_scores/hg17/esperr_rp_7way/ba |
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37 | #hg18 phastCons on 17-species multiz, 06-Apr-2006 /depot/data2/galaxy/binned_scores/hg18/phastCons17way/ba |
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