root/galaxy-central/tool-data/blastdb.loc.sample

リビジョン 2, 1.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1#This is a sample file distributed with Galaxy that is used to define a
2#list of nucelotide BLAST databases, using two columns tab separated:
3#
4#<database caption>     <path to base name>
5#
6#The captions typically contain spaces and might end with the build date.
7#It is important that the actual database name does not have a space in it,
8#and that the first tab that appears in the line is right before the path.
9#
10#So, for example, if your database is nt and the path to your base name
11#is /depot/data2/galaxy/blastdb/nt/nt.chunk, then the blastdb.loc entry
12#would look like this:
13#
14#nt 02 Dec 2009      /depot/data2/galaxy/blastdb/nt/nt.chunk
15#
16#and your /depot/data2/galaxy/blastdb/nt directory would contain all of
17#your "base names" (e.g.):
18#
19#-rw-r--r--  1 wychung galaxy  23437408 2008-04-09 11:26 nt.chunk.00.nhr
20#-rw-r--r--  1 wychung galaxy   3689920 2008-04-09 11:26 nt.chunk.00.nin
21#-rw-r--r--  1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq
22#...etc...
23#
24#Your blastdb.loc file should include an entry per line for each "base name"
25#you have stored.  For example:
26#
27#nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk
28#wgs 30 Nov 2009        /depot/data2/galaxy/blastdb/wgs/wgs.chunk
29#test 20 Sep 2008       /depot/data2/galaxy/blastdb/test/test
30#...etc...
31#
32#See also blastdb_p.loc which is for any protein BLAST database.
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。