root/galaxy-central/tool-data/bowtie_indices_color.loc.sample

リビジョン 2, 1.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1#This is a sample file distributed with Galaxy that enables tools
2#to use a directory of colorspace Bowtie indexed sequences data files. 
3#You will need to create these data files and then create a
4#bowtie_indices_color.loc file similar to this one (store it in this
5#directory) that points to the directories in which those files are
6#stored. The bowtie_indices_color.loc file has this format (white
7#space characters are TAB characters):
8#
9#<build>        <file_base>
10#
11#So, for example, if you had hg18 indexed stored in
12#/depot/data2/galaxy/bowtie/hg18/,
13#then the bowtie_indices_color.loc entry would look like this:
14#
15#hg18   /depot/data2/galaxy/bowtie/hg18/hg18
16#
17#and your /depot/data2/galaxy/bowtie/hg18/ directory
18#would contain hg18.*.ebwt files:
19#
20#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.1.ebwt
21#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg18.2.ebwt
22#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 gh18.3.ebwt
23#...etc...
24#
25#Your bowtie_indices_color.loc file should include an entry per line
26#for each index set you have stored.  The "file" in the path does not
27#actually exist, but it is the prefix for the actual index files. For
28#example:
29#
30#hg18   /depot/data2/galaxy/bowtie/hg18/hg18
31#hg19   /depot/data2/galaxy/bowtie/hg19/hg19
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